Wall clock time and date at job start Tue Mar 31 2020 17:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00060 * 2 1 4 4 C 1.46896 * 110.99678 * 123.95697 * 2 1 3 5 5 C 1.53125 * 109.52261 * 174.99826 * 4 2 1 6 6 C 1.53033 * 109.28287 * 177.61782 * 5 4 2 7 7 N 1.46851 * 109.52231 * 300.82460 * 6 5 4 8 8 C 1.46898 * 110.99682 * 185.83477 * 7 6 5 9 9 C 1.53006 * 109.47006 * 170.00115 * 8 7 6 10 10 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 11 11 S 1.65598 * 119.99398 * 164.99895 * 10 9 8 12 12 O 1.42110 * 104.27225 * 181.06720 * 11 10 9 13 13 O 1.42095 * 104.28131 * 308.92220 * 11 10 9 14 14 C 1.81401 * 104.45377 * 64.99846 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 C 1.50695 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00017 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47179 * 90.00013 * 20 18 16 22 22 H 1.48499 * 109.47453 * 210.00211 * 20 18 16 23 23 H 1.48505 * 109.47274 * 330.00193 * 20 18 16 24 24 C 1.46846 * 111.19864 * 61.73920 * 7 6 5 25 25 C 1.53033 * 109.52460 * 298.25500 * 24 7 6 26 26 H 1.08995 * 109.47252 * 296.04985 * 1 2 3 27 27 H 1.09002 * 109.47155 * 56.04370 * 1 2 3 28 28 H 1.08999 * 109.47085 * 176.04788 * 1 2 3 29 29 H 1.08999 * 109.46841 * 183.95223 * 3 2 1 30 30 H 1.09004 * 109.47195 * 303.95252 * 3 2 1 31 31 H 1.09001 * 109.46946 * 63.95494 * 3 2 1 32 32 H 1.08994 * 109.52708 * 54.87003 * 4 2 1 33 33 H 1.09005 * 109.50073 * 57.67758 * 5 4 2 34 34 H 1.08992 * 109.53280 * 297.58470 * 5 4 2 35 35 H 1.08989 * 109.46624 * 180.80484 * 6 5 4 36 36 H 1.09002 * 109.45127 * 60.82884 * 6 5 4 37 37 H 1.09001 * 109.47392 * 50.00413 * 8 7 6 38 38 H 1.09001 * 109.47520 * 290.00136 * 8 7 6 39 39 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 40 40 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 41 41 H 0.96998 * 120.00163 * 344.99658 * 10 9 8 42 42 H 1.09002 * 109.47012 * 299.99833 * 14 11 10 43 43 H 1.09010 * 109.46686 * 59.99500 * 14 11 10 44 44 H 1.09002 * 109.47172 * 300.00094 * 15 14 11 45 45 H 1.08998 * 109.47055 * 59.99558 * 15 14 11 46 46 H 0.96995 * 119.99916 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.46555 * 58.27646 * 24 7 6 48 48 H 1.09001 * 109.46296 * 178.24247 * 24 7 6 49 49 H 1.08997 * 109.50475 * 299.23909 * 25 24 7 50 50 H 1.09002 * 109.50799 * 179.12007 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5210 -0.8495 1.0362 6 6 4.0682 -1.5970 2.2543 7 7 3.6792 -0.8886 3.4804 8 6 4.3026 -1.4998 4.6617 9 6 4.0818 -0.5988 5.8785 10 7 4.7041 -1.2081 7.0566 11 16 4.9523 -0.3047 8.4221 12 8 5.5842 -1.2016 9.3254 13 8 5.6222 0.8585 7.9560 14 6 3.2837 0.1101 9.0001 15 6 3.3797 0.9538 10.2728 16 6 1.9934 1.2978 10.7532 17 1 1.1302 0.9500 10.2053 18 6 1.8271 2.0568 11.8923 19 7 2.8783 2.4808 12.5592 20 14 0.1088 2.4839 12.4874 21 1 -0.3685 1.4306 13.4191 22 1 0.1394 3.7909 13.1916 23 1 -0.8108 2.5697 11.3244 24 6 2.2186 -0.8374 3.6233 25 6 1.6162 -0.0671 2.4461 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8723 0.9233 32 1 1.5741 -1.7712 1.1261 33 1 3.9394 0.1567 1.0085 34 1 3.7972 -1.3836 0.1271 35 1 5.1553 -1.6457 2.1923 36 1 3.6599 -2.6075 2.2736 37 1 5.3720 -1.6192 4.4875 38 1 3.8533 -2.4756 4.8459 39 1 4.5312 0.3770 5.6944 40 1 3.0126 -0.4794 6.0529 41 1 4.9707 -2.1405 7.0367 42 1 2.7617 0.6752 8.2278 43 1 2.7344 -0.8071 9.2131 44 1 3.9015 0.3884 11.0449 45 1 3.9291 1.8708 10.0602 46 1 2.7613 3.0150 13.3603 47 1 1.8191 -1.8515 3.6363 48 1 1.9623 -0.3343 4.5557 49 1 2.0046 0.9513 2.4407 50 1 0.5309 -0.0427 2.5443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176920127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:07 Heat of formation + Delta-G solvation = -70.630605 kcal Electronic energy + Delta-G solvation = -27232.409722 eV Core-core repulsion = 23421.481740 eV Total energy + Delta-G solvation = -3810.927983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.09121 -37.57842 -36.56882 -35.47553 -35.17074 -33.89683 -32.11583 -31.24956 -31.16461 -28.10841 -27.86496 -25.60709 -25.13245 -23.82017 -22.46098 -21.71008 -21.34236 -19.66157 -18.94207 -17.49785 -16.70919 -16.57185 -16.13570 -15.88407 -15.56645 -15.39829 -15.02626 -14.89188 -14.76099 -14.58987 -14.48909 -14.00484 -13.64980 -13.56418 -13.34914 -12.56769 -12.54174 -12.43935 -12.38380 -12.09986 -12.08542 -11.80391 -11.69325 -11.59816 -11.56935 -11.47974 -11.32988 -11.10797 -11.08726 -10.96714 -10.89727 -10.68518 -10.42350 -10.38755 -9.79037 -9.47841 -9.02530 -8.67311 -8.59710 -8.51085 -6.13205 -4.18752 0.79385 3.05336 3.25077 3.31362 3.33879 3.55865 3.66195 4.24995 4.36756 4.38438 4.43454 4.60104 4.66944 4.77805 4.83328 4.88108 4.89829 5.00600 5.03294 5.12504 5.17971 5.21992 5.24692 5.25208 5.32132 5.33876 5.40069 5.51697 5.56519 5.59957 5.62174 5.67032 5.71480 5.72271 5.77520 5.84062 5.97903 6.01188 6.48223 6.62836 6.68215 6.75869 6.76592 7.07846 7.29902 7.36273 7.79683 8.16943 8.84603 9.45927 10.97876 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.002540 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.758149 B =11019.037989 C =12805.733910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.015 3.985 4 C 0.082 3.918 5 C -0.109 4.109 6 C 0.058 3.942 7 N -0.536 5.536 8 C 0.052 3.948 9 C 0.117 3.883 10 N -1.128 6.128 11 S 2.596 3.404 12 O -0.968 6.968 13 O -0.965 6.965 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.053 3.947 25 C -0.152 4.152 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.411 0.589 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.265 0.735 47 H 0.035 0.965 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -8.688 -25.717 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.133 4.133 4 C -0.026 4.026 5 C -0.147 4.147 6 C -0.070 4.070 7 N -0.261 5.261 8 C -0.078 4.078 9 C -0.009 4.009 10 N -0.886 5.886 11 S 2.693 3.307 12 O -0.958 6.958 13 O -0.955 6.955 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.075 4.075 25 C -0.191 4.191 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.244 0.756 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.932 -7.913 -25.732 26.937 hybrid contribution -2.177 -0.641 1.119 2.530 sum -3.109 -8.554 -24.613 26.242 Atomic orbital electron populations 1.22406 0.87543 1.02150 1.00705 1.62260 1.07809 1.14230 1.42026 1.22495 1.01228 0.88855 1.00674 1.21808 0.95668 0.97292 0.87867 1.21664 0.93988 1.01960 0.97109 1.22074 1.00691 0.95013 0.89240 1.61830 1.08664 1.53679 1.01977 1.22222 1.00445 0.95592 0.89493 1.21230 0.97614 0.97803 0.84296 1.55772 1.78840 1.25069 1.28902 1.05470 0.78602 0.73841 0.72755 1.93555 1.74395 1.64395 1.63470 1.93543 1.72037 1.50363 1.79543 1.30440 1.20042 1.10623 1.11164 1.18959 0.99960 0.94155 0.88048 1.21000 0.91348 1.33578 1.10058 0.92098 1.25070 0.97293 0.95647 0.96490 1.69951 1.29165 1.35888 1.17813 0.86471 0.83978 0.77920 0.78913 1.20487 1.20993 1.19783 1.22130 0.87066 0.99054 0.99241 1.22286 1.00359 1.01277 0.95200 0.95127 0.91469 0.91542 0.90884 0.91698 0.94804 0.90402 0.90606 0.90738 0.90250 0.94782 0.89769 0.94086 0.89238 0.91896 0.75644 0.86389 0.86186 0.94828 0.94777 0.92517 0.94679 0.89891 0.90314 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.54 -4.09 5.01 -243.02 -1.22 -5.30 16 3 C 0.02 0.11 8.82 60.06 0.53 0.64 16 4 C 0.08 0.61 2.29 -67.59 -0.16 0.45 16 5 C -0.11 -0.78 5.24 -26.65 -0.14 -0.92 16 6 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16 7 N -0.54 -4.70 4.66 -234.67 -1.09 -5.80 16 8 C 0.05 0.46 5.10 -3.82 -0.02 0.44 16 9 C 0.12 1.30 6.06 -4.04 -0.02 1.27 16 10 N -1.13 -13.95 5.89 -10.61 -0.06 -14.01 16 11 S 2.60 45.41 5.46 -107.50 -0.59 44.82 16 12 O -0.97 -19.81 18.08 -57.54 -1.04 -20.85 16 13 O -0.97 -19.90 17.50 -57.54 -1.01 -20.91 16 14 C -0.59 -11.06 6.01 37.15 0.22 -10.83 16 15 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.05 0.45 5.29 -3.84 -0.02 0.43 16 25 C -0.15 -1.19 4.69 -26.65 -0.12 -1.31 16 26 H 0.03 0.20 6.51 -51.93 -0.34 -0.14 16 27 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 6.28 -51.93 -0.33 0.18 16 30 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.03 0.25 6.23 -51.93 -0.32 -0.07 16 32 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.08 0.60 6.32 -51.93 -0.33 0.27 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.55 8.01 -51.94 -0.42 0.13 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.72 7.99 -51.93 -0.41 0.31 16 38 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 39 H 0.09 1.12 7.69 -51.93 -0.40 0.72 16 40 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 41 H 0.41 4.17 8.62 -34.47 -0.30 3.88 16 42 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 43 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.73 6.21 -51.93 -0.32 0.40 16 49 H 0.08 0.70 6.27 -51.93 -0.33 0.37 16 50 H 0.07 0.51 6.66 -51.93 -0.35 0.17 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -34.60 395.46 -11.85 -46.46 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.78 Total: 0.52 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 0.26 Total: -21.29 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -1.64 Total: -50.84 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -2.05 Total: -41.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.41 SS G_CDS: -0.59 Total: 44.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.60 -11.85 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176920127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.175 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds