Wall clock time and date at job start Tue Mar 31 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00060 * 2 1 4 4 C 1.46896 * 110.99678 * 123.95697 * 2 1 3 5 5 C 1.53125 * 109.52261 * 174.99826 * 4 2 1 6 6 C 1.53033 * 109.28287 * 177.61782 * 5 4 2 7 7 N 1.46851 * 109.52231 * 300.82460 * 6 5 4 8 8 C 1.46898 * 110.99682 * 185.83477 * 7 6 5 9 9 C 1.53006 * 109.47006 * 170.00115 * 8 7 6 10 10 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 11 11 S 1.65598 * 119.99398 * 164.99895 * 10 9 8 12 12 O 1.42110 * 104.27225 * 181.06720 * 11 10 9 13 13 O 1.42095 * 104.28131 * 308.92220 * 11 10 9 14 14 C 1.81401 * 104.45377 * 64.99846 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 C 1.50695 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00017 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47179 * 90.00013 * 20 18 16 22 22 H 1.48499 * 109.47453 * 210.00211 * 20 18 16 23 23 H 1.48505 * 109.47274 * 330.00193 * 20 18 16 24 24 C 1.46846 * 111.19864 * 61.73920 * 7 6 5 25 25 C 1.53033 * 109.52460 * 298.25500 * 24 7 6 26 26 H 1.08995 * 109.47252 * 296.04985 * 1 2 3 27 27 H 1.09002 * 109.47155 * 56.04370 * 1 2 3 28 28 H 1.08999 * 109.47085 * 176.04788 * 1 2 3 29 29 H 1.08999 * 109.46841 * 183.95223 * 3 2 1 30 30 H 1.09004 * 109.47195 * 303.95252 * 3 2 1 31 31 H 1.09001 * 109.46946 * 63.95494 * 3 2 1 32 32 H 1.08994 * 109.52708 * 54.87003 * 4 2 1 33 33 H 1.09005 * 109.50073 * 57.67758 * 5 4 2 34 34 H 1.08992 * 109.53280 * 297.58470 * 5 4 2 35 35 H 1.08989 * 109.46624 * 180.80484 * 6 5 4 36 36 H 1.09002 * 109.45127 * 60.82884 * 6 5 4 37 37 H 1.09001 * 109.47392 * 50.00413 * 8 7 6 38 38 H 1.09001 * 109.47520 * 290.00136 * 8 7 6 39 39 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 40 40 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 41 41 H 0.96998 * 120.00163 * 344.99658 * 10 9 8 42 42 H 1.09002 * 109.47012 * 299.99833 * 14 11 10 43 43 H 1.09010 * 109.46686 * 59.99500 * 14 11 10 44 44 H 1.09002 * 109.47172 * 300.00094 * 15 14 11 45 45 H 1.08998 * 109.47055 * 59.99558 * 15 14 11 46 46 H 0.96995 * 119.99916 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.46555 * 58.27646 * 24 7 6 48 48 H 1.09001 * 109.46296 * 178.24247 * 24 7 6 49 49 H 1.08997 * 109.50475 * 299.23909 * 25 24 7 50 50 H 1.09002 * 109.50799 * 179.12007 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5210 -0.8495 1.0362 6 6 4.0682 -1.5970 2.2543 7 7 3.6792 -0.8886 3.4804 8 6 4.3026 -1.4998 4.6617 9 6 4.0818 -0.5988 5.8785 10 7 4.7041 -1.2081 7.0566 11 16 4.9523 -0.3047 8.4221 12 8 5.5842 -1.2016 9.3254 13 8 5.6222 0.8585 7.9560 14 6 3.2837 0.1101 9.0001 15 6 3.3797 0.9538 10.2728 16 6 1.9934 1.2978 10.7532 17 1 1.1302 0.9500 10.2053 18 6 1.8271 2.0568 11.8923 19 7 2.8783 2.4808 12.5592 20 14 0.1088 2.4839 12.4874 21 1 -0.3685 1.4306 13.4191 22 1 0.1394 3.7909 13.1916 23 1 -0.8108 2.5697 11.3244 24 6 2.2186 -0.8374 3.6233 25 6 1.6162 -0.0671 2.4461 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3431 -0.0708 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8723 0.9233 32 1 1.5741 -1.7712 1.1261 33 1 3.9394 0.1567 1.0085 34 1 3.7972 -1.3836 0.1271 35 1 5.1553 -1.6457 2.1923 36 1 3.6599 -2.6075 2.2736 37 1 5.3720 -1.6192 4.4875 38 1 3.8533 -2.4756 4.8459 39 1 4.5312 0.3770 5.6944 40 1 3.0126 -0.4794 6.0529 41 1 4.9707 -2.1405 7.0367 42 1 2.7617 0.6752 8.2278 43 1 2.7344 -0.8071 9.2131 44 1 3.9015 0.3884 11.0449 45 1 3.9291 1.8708 10.0602 46 1 2.7613 3.0150 13.3603 47 1 1.8191 -1.8515 3.6363 48 1 1.9623 -0.3343 4.5557 49 1 2.0046 0.9513 2.4407 50 1 0.5309 -0.0427 2.5443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176920127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:06 Heat of formation + Delta-G solvation = -98.870524 kcal Electronic energy + Delta-G solvation = -27233.634297 eV Core-core repulsion = 23421.481740 eV Total energy + Delta-G solvation = -3812.152557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69477 -38.31941 -38.05593 -37.00493 -36.12358 -35.88786 -33.11906 -32.80908 -31.84586 -28.83142 -28.46403 -27.58556 -25.78132 -24.46191 -23.59096 -23.12949 -22.05861 -20.37762 -20.17634 -19.09993 -18.26173 -17.57035 -17.13417 -17.02149 -16.53362 -16.46609 -16.39456 -15.86158 -15.66550 -15.43574 -15.40792 -15.01293 -14.72801 -14.47034 -14.25691 -14.19059 -13.72195 -13.35790 -13.20506 -13.14330 -13.07911 -13.00159 -12.93096 -12.86354 -12.78005 -12.61353 -12.51221 -12.38905 -12.23083 -12.12578 -11.92904 -11.80695 -11.72120 -11.53908 -11.26234 -11.15373 -10.64623 -10.31669 -9.29618 -9.17375 -8.25999 -6.39860 -0.66311 1.40632 1.42402 1.53434 1.83433 2.37854 2.81720 2.92691 3.05397 3.07571 3.31020 3.77626 3.81531 3.90775 4.02196 4.08993 4.12989 4.15879 4.26757 4.33631 4.39175 4.47050 4.51865 4.53794 4.60204 4.64309 4.69486 4.74169 4.77532 4.81087 4.92807 4.96924 5.01591 5.03652 5.06492 5.08990 5.14809 5.26482 5.28586 5.29624 5.40530 5.68689 6.02174 6.06620 6.12443 6.13638 6.15931 6.19128 6.74059 7.30263 8.86333 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.002540 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.758149 B =11019.037989 C =12805.733910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.017 3.983 4 C 0.085 3.915 5 C -0.104 4.104 6 C 0.060 3.940 7 N -0.548 5.548 8 C 0.057 3.943 9 C 0.110 3.890 10 N -1.106 6.106 11 S 2.626 3.374 12 O -0.999 6.999 13 O -0.998 6.998 14 C -0.588 4.588 15 C 0.019 3.981 16 C -0.538 4.538 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.257 1.257 24 C 0.052 3.948 25 C -0.147 4.147 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.425 0.575 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.267 0.733 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -9.928 -27.333 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.131 4.131 4 C -0.023 4.023 5 C -0.142 4.142 6 C -0.068 4.068 7 N -0.273 5.273 8 C -0.072 4.072 9 C -0.017 4.017 10 N -0.869 5.869 11 S 2.722 3.278 12 O -0.989 6.989 13 O -0.988 6.988 14 C -0.720 4.720 15 C -0.019 4.019 16 C -0.577 4.577 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.181 1.181 24 C -0.076 4.076 25 C -0.186 4.186 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.262 0.738 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.657 -9.171 -27.359 28.977 hybrid contribution -1.613 -0.277 1.528 2.239 sum -4.269 -9.447 -25.831 27.834 Atomic orbital electron populations 1.22434 0.86957 1.02565 1.00855 1.62285 1.08447 1.14393 1.42067 1.22483 1.01212 0.88752 1.00629 1.21781 0.95784 0.97205 0.87568 1.21616 0.93786 1.01506 0.97341 1.22095 1.01062 0.95159 0.88517 1.61804 1.08904 1.54301 1.02340 1.22146 1.00970 0.95568 0.88548 1.21435 0.98152 0.97627 0.84437 1.55186 1.78710 1.25447 1.27520 1.04284 0.77495 0.73084 0.72933 1.93507 1.75004 1.65025 1.65336 1.93503 1.72681 1.52318 1.80250 1.30330 1.22094 1.10870 1.08683 1.18821 0.98742 0.93838 0.90546 1.21526 0.92630 1.33274 1.10304 0.90596 1.26122 1.01798 0.95569 0.96815 1.70100 1.31870 1.36955 1.18499 0.85317 0.78622 0.77585 0.78755 1.19638 1.20914 1.18095 1.22143 0.86950 0.99396 0.99116 1.22222 1.00375 1.00552 0.95429 0.95345 0.90898 0.91066 0.90981 0.91059 0.95427 0.90275 0.91510 0.90194 0.89749 0.94042 0.89356 0.92526 0.90764 0.90389 0.73814 0.84134 0.83852 0.97507 0.97499 0.92413 0.93974 0.90378 0.91570 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 127.69 1.19 1.42 16 2 N -0.55 -7.58 5.01 -922.79 -4.62 -12.20 16 3 C 0.02 0.23 8.82 127.69 1.13 1.35 16 4 C 0.09 1.13 2.29 45.00 0.10 1.23 16 5 C -0.10 -1.33 5.24 30.65 0.16 -1.17 16 6 C 0.06 0.75 5.46 86.32 0.47 1.22 16 7 N -0.55 -8.52 4.66 -896.37 -4.17 -12.69 16 8 C 0.06 0.87 5.10 86.31 0.44 1.31 16 9 C 0.11 2.20 6.06 86.38 0.52 2.72 16 10 N -1.11 -25.19 5.89 -187.48 -1.10 -26.30 16 11 S 2.63 90.71 5.46 -56.49 -0.31 90.40 16 12 O -1.00 -40.79 18.08 -127.65 -2.31 -43.10 16 13 O -1.00 -41.43 17.50 -127.65 -2.23 -43.67 16 14 C -0.59 -21.55 6.01 71.98 0.43 -21.12 16 15 C 0.02 1.01 4.98 29.84 0.15 1.16 16 16 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 17 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 19 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 20 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 C 0.05 0.77 5.29 86.32 0.46 1.23 16 25 C -0.15 -2.10 4.69 30.65 0.14 -1.96 16 26 H 0.03 0.34 6.51 -2.39 -0.02 0.32 16 27 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.94 6.28 -2.39 -0.01 0.93 16 30 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.03 0.39 6.23 -2.39 -0.01 0.38 16 32 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.07 0.98 6.32 -2.38 -0.02 0.97 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.98 8.01 -2.39 -0.02 0.96 16 36 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 1.30 7.99 -2.39 -0.02 1.28 16 38 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 39 H 0.07 1.76 7.69 -2.39 -0.02 1.74 16 40 H 0.08 1.36 6.43 -2.39 -0.02 1.34 16 41 H 0.43 7.56 8.62 -96.75 -0.83 6.73 16 42 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 43 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.08 1.21 6.21 -2.39 -0.01 1.20 16 49 H 0.07 1.12 6.27 -2.39 -0.01 1.11 16 50 H 0.07 0.96 6.66 -2.39 -0.02 0.95 16 Total: -1.00 -75.13 395.46 -6.46 -81.60 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.08 Total: 19.28 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 5.89 Total: -41.81 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -9.61 Total: -107.82 kcal Atomic # 8 Polarization: -82.22 SS G_CDS: -4.54 Total: -86.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 90.71 SS G_CDS: -0.31 Total: 90.40 kcal Total: -75.13 -6.46 -81.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176920127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.274 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds