Wall clock time and date at job start Tue Mar 31 2020 17:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46893 * 109.47141 * 2 1 4 4 C 1.46957 * 110.99794 * 190.00073 * 3 2 1 5 5 C 1.53058 * 109.36567 * 183.19153 * 4 3 2 6 6 N 1.46961 * 109.36300 * 301.60230 * 5 4 3 7 7 C 1.46896 * 110.99728 * 183.18816 * 6 5 4 8 8 H 1.09002 * 109.47220 * 54.99816 * 7 6 5 9 9 C 1.53000 * 109.47053 * 294.99460 * 7 6 5 10 10 C 1.52997 * 109.46848 * 174.99746 * 7 6 5 11 11 N 1.46500 * 109.47520 * 304.99910 * 10 7 6 12 12 S 1.65598 * 120.00307 * 164.99978 * 11 10 7 13 13 O 1.42095 * 104.27992 * 181.07284 * 12 11 10 14 14 O 1.42105 * 104.27765 * 308.92799 * 12 11 10 15 15 C 1.81404 * 104.44789 * 64.99934 * 12 11 10 16 16 C 1.52996 * 109.46745 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.46975 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00258 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47175 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46795 * 120.00121 * 21 19 17 24 24 H 1.48500 * 109.46650 * 239.99866 * 21 19 17 25 25 C 1.46958 * 110.87800 * 59.31699 * 6 5 4 26 26 C 1.46950 * 111.00570 * 313.80365 * 3 2 1 27 27 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46504 * 299.99910 * 1 2 3 29 29 H 1.08999 * 109.46919 * 59.99124 * 1 2 3 30 30 H 1.09000 * 109.46504 * 240.00090 * 2 1 3 31 31 H 1.08999 * 109.46919 * 120.00876 * 2 1 3 32 32 H 1.09001 * 109.48689 * 63.22544 * 4 3 2 33 33 H 1.08995 * 109.49138 * 303.15925 * 4 3 2 34 34 H 1.08997 * 109.48875 * 181.63446 * 5 4 3 35 35 H 1.08997 * 109.50276 * 61.57638 * 5 4 3 36 36 H 1.09004 * 109.46724 * 60.00724 * 9 7 6 37 37 H 1.09001 * 109.47194 * 180.02562 * 9 7 6 38 38 H 1.08992 * 109.47399 * 300.00238 * 9 7 6 39 39 H 1.09004 * 109.47346 * 65.00056 * 10 7 6 40 40 H 1.09002 * 109.47196 * 184.99830 * 10 7 6 41 41 H 0.96997 * 119.99767 * 345.00122 * 11 10 7 42 42 H 1.08999 * 109.47195 * 300.00109 * 15 12 11 43 43 H 1.08994 * 109.46980 * 60.00231 * 15 12 11 44 44 H 1.08999 * 109.47483 * 300.00079 * 16 15 12 45 45 H 1.09004 * 109.47605 * 60.00271 * 16 15 12 46 46 H 0.96995 * 119.99821 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.49010 * 60.65115 * 25 6 5 48 48 H 1.09008 * 109.48343 * 180.71093 * 25 6 5 49 49 H 1.09006 * 109.48972 * 296.77694 * 26 3 2 50 50 H 1.08997 * 109.49228 * 56.84226 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4310 -0.2383 5 6 3.9519 2.8809 -0.1517 6 7 3.2321 3.6941 -1.1418 7 6 3.7218 5.0790 -1.1417 8 1 4.8004 5.0829 -1.2990 9 6 3.4000 5.7336 0.2032 10 6 3.0397 5.8611 -2.2659 11 7 3.2482 5.1679 -3.5395 12 16 2.3293 5.5652 -4.8587 13 8 2.7848 4.6886 -5.8800 14 8 0.9910 5.5050 -4.3846 15 6 2.7948 7.2776 -5.2353 16 6 2.0042 7.7653 -6.4510 17 6 2.3904 9.1881 -6.7635 18 1 3.1264 9.6937 -6.1561 19 6 1.8041 9.8443 -7.8250 20 7 0.9074 9.2288 -8.5644 21 14 2.2833 11.6077 -8.2128 22 1 3.3047 12.0687 -7.2384 23 1 2.8420 11.6780 -9.5869 24 1 1.0837 12.4782 -8.1210 25 6 1.7827 3.6479 -0.9035 26 6 1.3001 2.1981 -0.9901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.6875 1.0336 -1.2295 33 1 3.9807 0.8318 0.5149 34 1 5.0216 2.9209 -0.3567 35 1 3.7584 3.2697 0.8480 36 1 3.8861 5.1763 1.0040 37 1 3.7630 6.7614 0.2031 38 1 2.3215 5.7296 0.3604 39 1 1.9713 5.9331 -2.0620 40 1 3.4668 6.8623 -2.3230 41 1 3.9244 4.4762 -3.6101 42 1 2.5711 7.9120 -4.3776 43 1 3.8617 7.3245 -5.4535 44 1 2.2283 7.1309 -7.3085 45 1 0.9372 7.7184 -6.2333 46 1 0.4947 9.6905 -9.3109 47 1 1.5643 4.0452 0.0877 48 1 1.2711 4.2471 -1.6567 49 1 1.4938 1.8094 -1.9899 50 1 0.2303 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189117926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:08 Heat of formation + Delta-G solvation = -67.657371 kcal Electronic energy + Delta-G solvation = -28008.343090 eV Core-core repulsion = 24197.544036 eV Total energy + Delta-G solvation = -3810.799053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02132 -37.45258 -36.47368 -35.35618 -34.47916 -33.86874 -32.01476 -31.14364 -31.11698 -29.68807 -26.36359 -25.57366 -25.50102 -24.09271 -22.08818 -21.63699 -21.04028 -19.39274 -18.76971 -17.37447 -16.96048 -16.48891 -16.11665 -15.64610 -15.34386 -15.29646 -15.05213 -14.90587 -14.63533 -14.54058 -14.43129 -13.72614 -13.60092 -13.22017 -13.11898 -12.75727 -12.53770 -12.47530 -12.15042 -12.12875 -11.93574 -11.72044 -11.60199 -11.50935 -11.42481 -11.39661 -11.30014 -11.08660 -11.00913 -10.93428 -10.77673 -10.63143 -10.37236 -10.36420 -9.75931 -9.39973 -8.93578 -8.63437 -8.49731 -8.40564 -6.11609 -4.16906 0.87898 3.23519 3.25593 3.32794 3.36202 3.62121 3.67990 4.29998 4.39278 4.51443 4.58541 4.69092 4.79030 4.85948 4.87309 4.95868 5.04346 5.07252 5.17308 5.20790 5.23605 5.24000 5.29206 5.35254 5.40080 5.47101 5.53484 5.56054 5.63997 5.68229 5.71231 5.72971 5.76292 5.84726 5.84784 5.94878 5.97281 6.14214 6.52110 6.71588 6.74443 6.93661 6.94120 7.29835 7.32554 7.39390 7.81773 8.19145 8.86854 9.47750 10.99537 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.002553 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.339907 B =10963.636379 C =11578.853075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.057 3.943 5 C 0.056 3.944 6 N -0.528 5.528 7 C 0.076 3.924 8 H 0.091 0.909 9 C -0.187 4.187 10 C 0.123 3.877 11 N -1.115 6.115 12 S 2.595 3.405 13 O -0.969 6.969 14 O -0.969 6.969 15 C -0.592 4.592 16 C 0.027 3.973 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.048 3.952 26 C 0.051 3.949 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.416 0.584 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.264 0.736 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.043 0.957 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -14.313 21.263 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.266 5.266 4 C -0.071 4.071 5 C -0.072 4.072 6 N -0.252 5.252 7 C -0.034 4.034 8 H 0.109 0.891 9 C -0.247 4.247 10 C -0.005 4.005 11 N -0.873 5.873 12 S 2.692 3.308 13 O -0.960 6.960 14 O -0.959 6.959 15 C -0.725 4.725 16 C -0.012 4.012 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.080 4.080 26 C -0.077 4.077 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.062 0.938 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.667 -14.774 20.714 25.867 hybrid contribution 0.931 1.225 -0.126 1.544 sum 5.598 -13.549 20.588 25.274 Atomic orbital electron populations 1.21942 0.94946 1.01919 1.02695 1.22062 0.95879 0.89094 1.00624 1.62275 1.03993 1.10736 1.49641 1.22143 0.88218 0.96535 1.00235 1.22159 0.98037 0.92733 0.94309 1.62311 1.04355 1.09830 1.48754 1.21890 1.00120 0.87608 0.93759 0.89137 1.22430 1.02736 1.01741 0.97770 1.21342 1.01242 0.94760 0.83137 1.55508 1.56509 1.51679 1.23620 1.05436 0.74297 0.78273 0.72802 1.93546 1.81891 1.63411 1.57106 1.93524 1.35420 1.87182 1.79784 1.30469 1.11184 1.20415 1.10480 1.18957 0.94814 0.98339 0.89044 1.21051 1.24054 0.96858 1.13872 0.92023 1.25080 0.94922 0.98583 0.95984 1.69966 1.27103 1.37258 1.18547 0.86419 0.78413 0.84178 0.78303 1.19666 1.20805 1.20809 1.22315 0.88220 0.96575 1.00918 1.22284 0.98657 0.92912 0.93856 0.92216 0.91826 0.92073 0.94882 0.90885 0.93920 0.90594 0.90412 0.93696 0.92027 0.91493 0.91761 0.90397 0.91289 0.74955 0.86472 0.86194 0.94889 0.94862 0.92599 0.93594 0.89040 0.93844 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.18 37.16 0.34 -0.82 16 2 C 0.05 0.41 6.00 -3.82 -0.02 0.39 16 3 N -0.54 -5.04 4.86 -234.47 -1.14 -6.18 16 4 C 0.06 0.49 5.58 -3.76 -0.02 0.47 16 5 C 0.06 0.46 5.25 -3.76 -0.02 0.44 16 6 N -0.53 -5.15 4.36 -226.49 -0.99 -6.14 16 7 C 0.08 0.67 2.48 -67.72 -0.17 0.50 16 8 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 9 C -0.19 -1.41 8.49 37.16 0.32 -1.10 16 10 C 0.12 1.32 5.16 -4.04 -0.02 1.29 16 11 N -1.12 -14.37 5.63 -10.61 -0.06 -14.43 16 12 S 2.59 46.34 5.46 -107.50 -0.59 45.75 16 13 O -0.97 -20.49 18.08 -57.54 -1.04 -21.53 16 14 O -0.97 -19.83 17.50 -57.54 -1.01 -20.84 16 15 C -0.59 -11.27 6.01 37.16 0.22 -11.05 16 16 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.05 0.51 4.81 -3.77 -0.02 0.49 16 26 C 0.05 0.53 4.93 -3.77 -0.02 0.51 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 6.26 -51.93 -0.33 0.17 16 30 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.04 0.38 6.60 -51.93 -0.34 0.03 16 36 H 0.06 0.44 6.59 -51.93 -0.34 0.09 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.52 6.46 -51.93 -0.34 0.19 16 39 H 0.08 0.91 6.18 -51.93 -0.32 0.58 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.42 4.89 8.54 -34.47 -0.29 4.60 16 42 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 43 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.05 0.47 6.46 -51.93 -0.34 0.13 16 48 H 0.09 1.13 6.28 -51.92 -0.33 0.80 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.84 5.99 -51.93 -0.31 0.52 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -34.49 394.89 -11.92 -46.42 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.81 Total: 2.15 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.04 Total: -21.48 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -1.45 Total: -52.62 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.05 Total: -42.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.59 Total: 45.75 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.49 -11.92 -46.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189117926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.241 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds