Wall clock time and date at job start Tue Mar 31 2020 17:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46893 * 109.47141 * 2 1 4 4 C 1.46957 * 110.99794 * 190.00073 * 3 2 1 5 5 C 1.53058 * 109.36567 * 183.19153 * 4 3 2 6 6 N 1.46961 * 109.36300 * 301.60230 * 5 4 3 7 7 C 1.46896 * 110.99728 * 183.18816 * 6 5 4 8 8 H 1.09002 * 109.47220 * 54.99816 * 7 6 5 9 9 C 1.53000 * 109.47053 * 294.99460 * 7 6 5 10 10 C 1.52997 * 109.46848 * 174.99746 * 7 6 5 11 11 N 1.46500 * 109.47520 * 304.99910 * 10 7 6 12 12 S 1.65598 * 120.00307 * 164.99978 * 11 10 7 13 13 O 1.42095 * 104.27992 * 181.07284 * 12 11 10 14 14 O 1.42105 * 104.27765 * 308.92799 * 12 11 10 15 15 C 1.81404 * 104.44789 * 64.99934 * 12 11 10 16 16 C 1.52996 * 109.46745 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.46975 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00258 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47175 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46795 * 120.00121 * 21 19 17 24 24 H 1.48500 * 109.46650 * 239.99866 * 21 19 17 25 25 C 1.46958 * 110.87800 * 59.31699 * 6 5 4 26 26 C 1.46950 * 111.00570 * 313.80365 * 3 2 1 27 27 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46504 * 299.99910 * 1 2 3 29 29 H 1.08999 * 109.46919 * 59.99124 * 1 2 3 30 30 H 1.09000 * 109.46504 * 240.00090 * 2 1 3 31 31 H 1.08999 * 109.46919 * 120.00876 * 2 1 3 32 32 H 1.09001 * 109.48689 * 63.22544 * 4 3 2 33 33 H 1.08995 * 109.49138 * 303.15925 * 4 3 2 34 34 H 1.08997 * 109.48875 * 181.63446 * 5 4 3 35 35 H 1.08997 * 109.50276 * 61.57638 * 5 4 3 36 36 H 1.09004 * 109.46724 * 60.00724 * 9 7 6 37 37 H 1.09001 * 109.47194 * 180.02562 * 9 7 6 38 38 H 1.08992 * 109.47399 * 300.00238 * 9 7 6 39 39 H 1.09004 * 109.47346 * 65.00056 * 10 7 6 40 40 H 1.09002 * 109.47196 * 184.99830 * 10 7 6 41 41 H 0.96997 * 119.99767 * 345.00122 * 11 10 7 42 42 H 1.08999 * 109.47195 * 300.00109 * 15 12 11 43 43 H 1.08994 * 109.46980 * 60.00231 * 15 12 11 44 44 H 1.08999 * 109.47483 * 300.00079 * 16 15 12 45 45 H 1.09004 * 109.47605 * 60.00271 * 16 15 12 46 46 H 0.96995 * 119.99821 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.49010 * 60.65115 * 25 6 5 48 48 H 1.09008 * 109.48343 * 180.71093 * 25 6 5 49 49 H 1.09006 * 109.48972 * 296.77694 * 26 3 2 50 50 H 1.08997 * 109.49228 * 56.84226 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4310 -0.2383 5 6 3.9519 2.8809 -0.1517 6 7 3.2321 3.6941 -1.1418 7 6 3.7218 5.0790 -1.1417 8 1 4.8004 5.0829 -1.2990 9 6 3.4000 5.7336 0.2032 10 6 3.0397 5.8611 -2.2659 11 7 3.2482 5.1679 -3.5395 12 16 2.3293 5.5652 -4.8587 13 8 2.7848 4.6886 -5.8800 14 8 0.9910 5.5050 -4.3846 15 6 2.7948 7.2776 -5.2353 16 6 2.0042 7.7653 -6.4510 17 6 2.3904 9.1881 -6.7635 18 1 3.1264 9.6937 -6.1561 19 6 1.8041 9.8443 -7.8250 20 7 0.9074 9.2288 -8.5644 21 14 2.2833 11.6077 -8.2128 22 1 3.3047 12.0687 -7.2384 23 1 2.8420 11.6780 -9.5869 24 1 1.0837 12.4782 -8.1210 25 6 1.7827 3.6479 -0.9035 26 6 1.3001 2.1981 -0.9901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.6875 1.0336 -1.2295 33 1 3.9807 0.8318 0.5149 34 1 5.0216 2.9209 -0.3567 35 1 3.7584 3.2697 0.8480 36 1 3.8861 5.1763 1.0040 37 1 3.7630 6.7614 0.2031 38 1 2.3215 5.7296 0.3604 39 1 1.9713 5.9331 -2.0620 40 1 3.4668 6.8623 -2.3230 41 1 3.9244 4.4762 -3.6101 42 1 2.5711 7.9120 -4.3776 43 1 3.8617 7.3245 -5.4535 44 1 2.2283 7.1309 -7.3085 45 1 0.9372 7.7184 -6.2333 46 1 0.4947 9.6905 -9.3109 47 1 1.5643 4.0452 0.0877 48 1 1.2711 4.2471 -1.6567 49 1 1.4938 1.8094 -1.9899 50 1 0.2303 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189117926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:07 Heat of formation + Delta-G solvation = -95.755246 kcal Electronic energy + Delta-G solvation = -28009.561505 eV Core-core repulsion = 24197.544036 eV Total energy + Delta-G solvation = -3812.017469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75686 -38.28569 -37.99009 -36.94554 -35.87949 -35.41928 -33.10679 -32.75691 -31.88351 -30.37492 -27.57906 -27.07092 -26.32930 -24.84467 -23.57675 -22.74642 -21.80185 -20.21989 -20.11332 -19.03525 -18.20496 -17.70829 -17.35464 -16.96640 -16.51398 -16.32174 -16.17405 -15.96603 -15.74126 -15.50534 -15.29902 -15.05737 -14.51034 -14.42750 -14.20961 -13.89553 -13.69763 -13.60253 -13.29645 -13.14714 -13.06068 -12.94162 -12.82503 -12.78050 -12.75361 -12.65009 -12.39746 -12.25450 -12.21590 -12.09065 -12.07421 -11.73534 -11.71001 -11.49368 -11.38739 -11.12208 -10.65153 -10.21534 -9.37433 -9.13847 -8.25547 -6.39448 -0.60908 1.41342 1.42047 1.55374 1.94994 2.38565 2.86793 2.91139 2.96756 3.07999 3.33758 3.74600 3.88683 4.01254 4.03008 4.16189 4.17654 4.18914 4.24735 4.36154 4.37421 4.48970 4.53368 4.53641 4.56535 4.60447 4.66629 4.76695 4.80355 4.85985 4.90374 4.95976 5.00220 5.07318 5.10112 5.13948 5.16812 5.28496 5.28903 5.30074 5.40005 5.69489 6.00395 6.01415 6.07109 6.19354 6.22878 6.31143 6.74883 7.30764 8.87101 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.002553 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.339907 B =10963.636379 C =11578.853075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 N -0.543 5.543 4 C 0.055 3.945 5 C 0.059 3.941 6 N -0.541 5.541 7 C 0.080 3.920 8 H 0.109 0.891 9 C -0.181 4.181 10 C 0.110 3.890 11 N -1.095 6.095 12 S 2.619 3.381 13 O -1.005 7.005 14 O -0.998 6.998 15 C -0.589 4.589 16 C 0.019 3.981 17 C -0.536 4.536 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.278 1.278 25 C 0.052 3.948 26 C 0.053 3.947 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.425 0.575 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.004 0.996 45 H 0.006 0.994 46 H 0.267 0.733 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.021 0.979 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -13.437 23.543 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 N -0.268 5.268 4 C -0.073 4.073 5 C -0.069 4.069 6 N -0.266 5.266 7 C -0.030 4.030 8 H 0.127 0.873 9 C -0.241 4.241 10 C -0.016 4.016 11 N -0.857 5.857 12 S 2.716 3.284 13 O -0.995 6.995 14 O -0.988 6.988 15 C -0.721 4.721 16 C -0.020 4.020 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.076 4.076 26 C -0.075 4.075 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.262 0.738 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.039 0.961 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.791 -13.903 23.004 27.724 hybrid contribution 0.275 0.871 -0.766 1.192 sum 7.066 -13.031 22.239 26.727 Atomic orbital electron populations 1.21910 0.94603 1.02588 1.02072 1.22135 0.96229 0.88482 1.00953 1.62329 1.04470 1.11256 1.48768 1.22222 0.87820 0.97191 1.00057 1.22201 0.98631 0.92055 0.94032 1.62308 1.03796 1.10775 1.49679 1.21923 1.00690 0.86854 0.93494 0.87340 1.22371 1.02252 1.02462 0.96979 1.21702 1.01341 0.96204 0.82402 1.54990 1.55979 1.51786 1.22910 1.04408 0.73829 0.77296 0.72886 1.93490 1.82363 1.64306 1.59368 1.93487 1.37656 1.87320 1.80341 1.30349 1.11455 1.21750 1.08511 1.18822 0.94330 0.97839 0.90970 1.21563 1.24100 0.97806 1.14056 0.90462 1.26150 0.94777 1.03632 0.95890 1.70116 1.28608 1.39485 1.19351 0.85249 0.78460 0.78091 0.78352 1.17773 1.20471 1.20386 1.22184 0.88979 0.96126 1.00360 1.22218 0.99068 0.93212 0.93038 0.90938 0.91859 0.93210 0.95458 0.89523 0.95286 0.88834 0.88801 0.93305 0.91172 0.90288 0.92710 0.91501 0.88774 0.73807 0.83844 0.83934 0.97809 0.97571 0.92429 0.93076 0.91244 0.96102 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.18 71.99 0.66 -1.54 16 2 C 0.05 0.75 6.00 86.31 0.52 1.27 16 3 N -0.54 -9.65 4.86 -895.73 -4.35 -14.00 16 4 C 0.06 0.86 5.58 86.31 0.48 1.34 16 5 C 0.06 0.83 5.25 86.31 0.45 1.29 16 6 N -0.54 -9.71 4.36 -870.48 -3.79 -13.51 16 7 C 0.08 1.20 2.48 44.92 0.11 1.31 16 8 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 9 C -0.18 -2.22 8.49 71.98 0.61 -1.61 16 10 C 0.11 2.14 5.16 86.38 0.45 2.58 16 11 N -1.09 -26.79 5.63 -187.49 -1.06 -27.85 16 12 S 2.62 94.06 5.46 -56.49 -0.31 93.75 16 13 O -1.00 -43.31 18.08 -127.65 -2.31 -45.61 16 14 O -1.00 -41.87 17.50 -127.65 -2.23 -44.10 16 15 C -0.59 -21.96 6.01 71.98 0.43 -21.53 16 16 C 0.02 1.01 4.98 29.85 0.15 1.16 16 17 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 20 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 21 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 22 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.05 1.08 4.81 86.31 0.42 1.50 16 26 C 0.05 1.12 4.93 86.31 0.43 1.55 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.81 6.26 -2.39 -0.01 0.80 16 30 H 0.03 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.05 0.68 6.60 -2.39 -0.02 0.66 16 36 H 0.07 0.77 6.59 -2.39 -0.02 0.75 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.79 6.46 -2.39 -0.02 0.77 16 39 H 0.07 1.49 6.18 -2.39 -0.01 1.48 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.43 9.31 8.54 -96.75 -0.83 8.48 16 42 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 43 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.05 1.00 6.46 -2.39 -0.02 0.99 16 48 H 0.07 1.76 6.28 -2.38 -0.01 1.74 16 49 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 50 H 0.09 1.75 5.99 -2.39 -0.01 1.74 16 Total: -1.00 -76.24 394.89 -6.25 -82.49 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.09 Total: 22.64 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 5.40 Total: -42.04 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -8.92 Total: -112.42 kcal Atomic # 8 Polarization: -85.18 SS G_CDS: -4.54 Total: -89.72 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 94.06 SS G_CDS: -0.31 Total: 93.75 kcal Total: -76.24 -6.25 -82.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189117926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.266 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds