Wall clock time and date at job start Tue Mar 31 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00000 * 2 1 4 4 C 1.50705 * 109.46992 * 275.55420 * 3 2 1 5 5 H 1.07995 * 120.00005 * 4.95784 * 4 3 2 6 6 C 1.37878 * 119.99644 * 184.95528 * 4 3 2 7 7 N 1.31511 * 119.99725 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00313 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47001 * 89.99910 * 8 6 4 10 10 H 1.48501 * 109.46902 * 209.99699 * 8 6 4 11 11 H 1.48498 * 109.46943 * 329.99736 * 8 6 4 12 12 S 1.65596 * 120.00025 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40326 * 159.51917 * 12 2 1 14 14 O 1.42104 * 106.40178 * 26.59912 * 12 2 1 15 15 N 1.65604 * 107.21804 * 273.06291 * 12 2 1 16 16 C 1.46500 * 120.00010 * 62.72941 * 15 12 2 17 17 C 1.52996 * 109.46774 * 164.42319 * 16 15 12 18 18 N 1.46902 * 109.47202 * 180.02562 * 17 16 15 19 19 C 1.46892 * 111.00290 * 180.02562 * 18 17 16 20 20 C 1.54247 * 108.89594 * 277.88312 * 19 18 17 21 21 C 1.50476 * 108.52618 * 159.26390 * 20 19 18 22 22 C 1.54069 * 112.49769 * 94.14979 * 21 20 19 23 23 C 1.54070 * 112.81862 * 318.28261 * 22 21 20 24 24 C 1.50471 * 112.49613 * 318.28836 * 23 22 21 25 25 C 1.45548 * 108.89720 * 155.00260 * 19 18 17 26 26 H 1.08996 * 109.47411 * 269.99901 * 1 2 3 27 27 H 1.09004 * 109.46972 * 30.00136 * 1 2 3 28 28 H 1.08996 * 109.47168 * 149.99543 * 1 2 3 29 29 H 1.08995 * 109.47291 * 35.55065 * 3 2 1 30 30 H 1.08999 * 109.47430 * 155.55672 * 3 2 1 31 31 H 0.97003 * 120.00386 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99557 * 242.73800 * 15 12 2 33 33 H 1.08997 * 109.46772 * 44.43038 * 16 15 12 34 34 H 1.08993 * 109.47522 * 284.42597 * 16 15 12 35 35 H 1.08997 * 109.47297 * 60.00443 * 17 16 15 36 36 H 1.09002 * 109.47567 * 300.00436 * 17 16 15 37 37 H 1.00909 * 110.99933 * 56.04256 * 18 17 16 38 38 H 1.09000 * 108.87455 * 36.39547 * 19 18 17 39 39 H 1.09001 * 109.62482 * 278.97444 * 20 19 18 40 40 H 1.08997 * 109.62715 * 39.55570 * 20 19 18 41 41 H 1.09008 * 108.87335 * 333.37660 * 21 20 19 42 42 H 1.09001 * 108.87753 * 214.93179 * 21 20 19 43 43 H 1.08999 * 108.81010 * 197.42465 * 22 21 20 44 44 H 1.08998 * 108.72467 * 79.08524 * 22 21 20 45 45 H 1.08994 * 108.87838 * 197.50509 * 23 22 21 46 46 H 1.09002 * 108.87240 * 79.06332 * 23 22 21 47 47 H 1.09000 * 109.62982 * 334.44094 * 24 23 22 48 48 H 1.08997 * 109.62940 * 213.86440 * 24 23 22 49 49 H 1.09001 * 108.88869 * 303.44220 * 25 19 18 50 50 H 1.08991 * 108.89507 * 62.02603 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3296 1.7725 -1.4142 5 1 1.8420 1.2475 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1886 3.3431 -2.9105 8 14 3.9169 3.8115 -0.2788 9 1 5.2823 3.2611 -0.0843 10 1 4.0083 5.2561 -0.6107 11 1 3.1311 3.6391 0.9693 12 16 2.2930 -1.4341 -0.0006 13 8 3.5995 -1.1429 -0.4775 14 8 1.4380 -2.3908 -0.6114 15 7 2.4649 -1.9016 1.5787 16 6 1.2801 -2.1952 2.3888 17 6 1.6988 -2.9602 3.6459 18 7 0.5107 -3.2552 4.4580 19 6 0.8751 -3.9903 5.6765 20 6 1.0210 -5.4868 5.3322 21 6 1.8623 -6.1418 6.3941 22 6 1.0123 -6.7756 7.5119 23 6 -0.1748 -5.8894 7.9352 24 6 0.1985 -4.4351 8.0330 25 6 -0.1393 -3.7513 6.6924 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6552 2.0014 0.5975 30 1 3.1894 1.1157 0.4252 31 1 3.7113 4.1392 -3.0950 32 1 3.3501 -1.9809 1.9674 33 1 0.5848 -2.8021 1.8089 34 1 0.7958 -1.2619 2.6759 35 1 2.3941 -2.3534 4.2259 36 1 2.1832 -3.8935 3.3589 37 1 -0.1773 -3.7622 3.9215 38 1 1.8330 -3.6180 6.0397 39 1 0.0366 -5.9539 5.3051 40 1 1.5070 -5.5937 4.3624 41 1 2.5213 -5.3930 6.8337 42 1 2.4723 -6.9179 5.9318 43 1 1.6475 -6.9505 8.3802 44 1 0.6283 -7.7329 7.1594 45 1 -0.5379 -6.2265 8.9061 46 1 -0.9755 -5.9996 7.2038 47 1 1.2663 -4.3437 8.2318 48 1 -0.3679 -3.9649 8.8369 49 1 -0.2283 -2.6773 6.8564 50 1 -1.0950 -4.1334 6.3337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237194364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:29 Heat of formation + Delta-G solvation = -88.679511 kcal Electronic energy + Delta-G solvation = -27467.175465 eV Core-core repulsion = 23655.464823 eV Total energy + Delta-G solvation = -3811.710642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.80203 -36.85946 -36.50227 -35.62140 -35.21923 -34.53049 -32.57065 -32.37299 -31.00823 -28.38077 -27.21788 -25.19633 -25.13754 -23.92930 -22.36670 -21.87912 -20.86338 -19.70786 -18.98283 -17.33130 -17.02445 -16.81424 -16.45086 -16.16198 -15.74329 -15.34352 -14.94512 -14.80351 -14.59167 -14.22619 -14.05666 -13.73924 -13.42418 -13.32997 -13.07570 -12.68248 -12.57030 -12.49380 -12.41642 -12.29797 -11.93934 -11.73749 -11.58688 -11.49755 -11.31189 -11.27473 -11.21726 -11.18502 -10.95162 -10.80918 -10.74139 -10.64961 -10.56177 -10.44463 -10.26089 -9.55697 -9.39538 -8.71379 -8.58019 -8.11813 -6.07509 -4.06933 1.13914 3.27681 3.33436 3.34940 3.38463 3.82781 4.10521 4.17590 4.39794 4.40353 4.52396 4.66107 4.74170 4.78478 4.84283 4.87569 4.98139 5.02438 5.04596 5.15412 5.23766 5.30352 5.38609 5.42256 5.50573 5.54339 5.59468 5.63008 5.73689 5.75976 5.77556 5.78990 5.86601 5.93290 5.97774 5.99523 6.02457 6.07514 6.23632 6.46435 6.70037 6.74136 6.98356 7.05885 7.14385 7.43404 7.59121 8.49599 8.97037 9.51840 11.05958 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002332 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.450201 B =12003.553033 C =12435.532795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.989 5.989 3 C 0.228 3.772 4 C -0.534 4.534 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.785 3.215 13 O -0.963 6.963 14 O -0.993 6.993 15 N -1.136 6.136 16 C 0.121 3.879 17 C 0.053 3.947 18 N -0.686 5.686 19 C 0.093 3.907 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.109 4.109 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.343 0.657 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 -17.629 23.478 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.831 5.831 3 C 0.105 3.895 4 C -0.573 4.573 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.792 3.208 13 O -0.947 6.947 14 O -0.977 6.977 15 N -0.895 5.895 16 C -0.006 4.006 17 C -0.078 4.078 18 N -0.317 5.317 19 C -0.016 4.016 20 C -0.189 4.189 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.483 -17.299 22.813 29.355 hybrid contribution 0.985 -0.133 0.693 1.212 sum -5.497 -17.432 23.506 29.776 Atomic orbital electron populations 1.21419 0.79720 1.03947 1.00286 1.57345 1.14474 1.22472 1.88841 1.19428 0.90918 0.80621 0.98571 1.21384 1.32421 1.11126 0.92342 0.90412 1.24882 0.95659 0.96938 0.95521 1.69896 1.40648 1.23979 1.18769 0.86898 0.80880 0.79283 0.82927 1.19770 1.20988 1.18962 1.01889 0.73339 0.72914 0.72658 1.93645 1.38744 1.84554 1.77724 1.93532 1.68931 1.60911 1.74280 1.56238 1.13901 1.85913 1.33467 1.21104 0.87250 1.00350 0.91877 1.22138 0.92976 0.98958 0.93704 1.60628 1.12471 1.50496 1.08070 1.20537 0.99444 0.90820 0.90847 1.22107 1.01098 0.96882 0.98810 1.21251 0.98139 1.00028 0.95980 1.21911 0.96924 0.98554 0.98044 1.21362 0.98069 0.95206 1.01098 1.21294 1.01763 0.95239 0.97110 1.20448 0.98806 1.01547 0.93933 0.94069 0.90132 0.91338 0.94953 0.95134 0.92520 0.75601 0.90840 0.90892 0.90352 0.94322 0.83843 0.90805 0.91241 0.91855 0.92063 0.92401 0.92384 0.92446 0.92490 0.92052 0.91689 0.91752 0.91151 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.69 59.85 0.64 2.17 16 2 N -0.99 -19.82 3.23 -123.05 -0.40 -20.21 16 3 C 0.23 5.37 4.16 -5.19 -0.02 5.35 16 4 C -0.53 -15.27 9.93 -34.44 -0.34 -15.62 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -27.65 13.96 55.43 0.77 -26.88 16 8 Si 0.87 21.26 27.37 -169.99 -4.65 16.60 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.97 6.69 56.52 0.38 -5.59 16 12 S 2.78 53.47 6.09 -107.50 -0.65 52.81 16 13 O -0.96 -22.55 16.99 -57.17 -0.97 -23.52 16 14 O -0.99 -20.40 16.34 -57.17 -0.93 -21.34 16 15 N -1.14 -15.47 6.05 -10.62 -0.06 -15.53 16 16 C 0.12 1.36 6.52 -4.04 -0.03 1.33 16 17 C 0.05 0.48 5.58 -3.82 -0.02 0.45 16 18 N -0.69 -5.53 6.15 -109.79 -0.67 -6.21 16 19 C 0.09 0.65 1.97 -70.58 -0.14 0.52 16 20 C -0.15 -0.98 4.92 -27.34 -0.13 -1.11 16 21 C -0.12 -0.70 5.31 -27.43 -0.15 -0.85 16 22 C -0.12 -0.65 5.85 -25.61 -0.15 -0.80 16 23 C -0.12 -0.65 5.31 -27.44 -0.15 -0.80 16 24 C -0.12 -0.66 5.61 -27.35 -0.15 -0.82 16 25 C -0.11 -0.72 4.77 -29.60 -0.14 -0.86 16 26 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.07 1.08 7.05 -51.93 -0.37 0.72 16 29 H 0.03 0.72 7.51 -51.93 -0.39 0.33 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.41 4.80 8.66 -34.47 -0.30 4.51 16 33 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 34 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 36 H 0.04 0.34 7.10 -51.93 -0.37 -0.03 16 37 H 0.34 2.55 8.51 -39.29 -0.33 2.21 16 38 H 0.07 0.56 7.11 -51.93 -0.37 0.20 16 39 H 0.07 0.45 6.98 -51.93 -0.36 0.09 16 40 H 0.06 0.46 6.99 -51.93 -0.36 0.10 16 41 H 0.06 0.38 6.63 -51.92 -0.34 0.04 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.35 6.63 -51.93 -0.34 0.01 16 47 H 0.06 0.38 6.98 -51.93 -0.36 0.02 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.41 7.46 -51.93 -0.39 0.02 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -34.55 392.69 -11.37 -45.92 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.83 Total: 1.44 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.88 Total: -9.01 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.36 Total: -68.83 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.91 Total: -44.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.60 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.65 Total: 52.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.55 -11.37 -45.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.759 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds