Wall clock time and date at job start Tue Mar 31 2020 17:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00000 * 2 1 4 4 C 1.50705 * 109.46992 * 275.55420 * 3 2 1 5 5 H 1.07995 * 120.00005 * 4.95784 * 4 3 2 6 6 C 1.37878 * 119.99644 * 184.95528 * 4 3 2 7 7 N 1.31511 * 119.99725 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00313 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47001 * 89.99910 * 8 6 4 10 10 H 1.48501 * 109.46902 * 209.99699 * 8 6 4 11 11 H 1.48498 * 109.46943 * 329.99736 * 8 6 4 12 12 S 1.65596 * 120.00025 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40326 * 159.51917 * 12 2 1 14 14 O 1.42104 * 106.40178 * 26.59912 * 12 2 1 15 15 N 1.65604 * 107.21804 * 273.06291 * 12 2 1 16 16 C 1.46500 * 120.00010 * 62.72941 * 15 12 2 17 17 C 1.52996 * 109.46774 * 164.42319 * 16 15 12 18 18 N 1.46902 * 109.47202 * 180.02562 * 17 16 15 19 19 C 1.46892 * 111.00290 * 180.02562 * 18 17 16 20 20 C 1.54247 * 108.89594 * 277.88312 * 19 18 17 21 21 C 1.50476 * 108.52618 * 159.26390 * 20 19 18 22 22 C 1.54069 * 112.49769 * 94.14979 * 21 20 19 23 23 C 1.54070 * 112.81862 * 318.28261 * 22 21 20 24 24 C 1.50471 * 112.49613 * 318.28836 * 23 22 21 25 25 C 1.45548 * 108.89720 * 155.00260 * 19 18 17 26 26 H 1.08996 * 109.47411 * 269.99901 * 1 2 3 27 27 H 1.09004 * 109.46972 * 30.00136 * 1 2 3 28 28 H 1.08996 * 109.47168 * 149.99543 * 1 2 3 29 29 H 1.08995 * 109.47291 * 35.55065 * 3 2 1 30 30 H 1.08999 * 109.47430 * 155.55672 * 3 2 1 31 31 H 0.97003 * 120.00386 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99557 * 242.73800 * 15 12 2 33 33 H 1.08997 * 109.46772 * 44.43038 * 16 15 12 34 34 H 1.08993 * 109.47522 * 284.42597 * 16 15 12 35 35 H 1.08997 * 109.47297 * 60.00443 * 17 16 15 36 36 H 1.09002 * 109.47567 * 300.00436 * 17 16 15 37 37 H 1.00909 * 110.99933 * 56.04256 * 18 17 16 38 38 H 1.09000 * 108.87455 * 36.39547 * 19 18 17 39 39 H 1.09001 * 109.62482 * 278.97444 * 20 19 18 40 40 H 1.08997 * 109.62715 * 39.55570 * 20 19 18 41 41 H 1.09008 * 108.87335 * 333.37660 * 21 20 19 42 42 H 1.09001 * 108.87753 * 214.93179 * 21 20 19 43 43 H 1.08999 * 108.81010 * 197.42465 * 22 21 20 44 44 H 1.08998 * 108.72467 * 79.08524 * 22 21 20 45 45 H 1.08994 * 108.87838 * 197.50509 * 23 22 21 46 46 H 1.09002 * 108.87240 * 79.06332 * 23 22 21 47 47 H 1.09000 * 109.62982 * 334.44094 * 24 23 22 48 48 H 1.08997 * 109.62940 * 213.86440 * 24 23 22 49 49 H 1.09001 * 108.88869 * 303.44220 * 25 19 18 50 50 H 1.08991 * 108.89507 * 62.02603 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3296 1.7725 -1.4142 5 1 1.8420 1.2475 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1886 3.3431 -2.9105 8 14 3.9169 3.8115 -0.2788 9 1 5.2823 3.2611 -0.0843 10 1 4.0083 5.2561 -0.6107 11 1 3.1311 3.6391 0.9693 12 16 2.2930 -1.4341 -0.0006 13 8 3.5995 -1.1429 -0.4775 14 8 1.4380 -2.3908 -0.6114 15 7 2.4649 -1.9016 1.5787 16 6 1.2801 -2.1952 2.3888 17 6 1.6988 -2.9602 3.6459 18 7 0.5107 -3.2552 4.4580 19 6 0.8751 -3.9903 5.6765 20 6 1.0210 -5.4868 5.3322 21 6 1.8623 -6.1418 6.3941 22 6 1.0123 -6.7756 7.5119 23 6 -0.1748 -5.8894 7.9352 24 6 0.1985 -4.4351 8.0330 25 6 -0.1393 -3.7513 6.6924 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6552 2.0014 0.5975 30 1 3.1894 1.1157 0.4252 31 1 3.7113 4.1392 -3.0950 32 1 3.3501 -1.9809 1.9674 33 1 0.5848 -2.8021 1.8089 34 1 0.7958 -1.2619 2.6759 35 1 2.3941 -2.3534 4.2259 36 1 2.1832 -3.8935 3.3589 37 1 -0.1773 -3.7622 3.9215 38 1 1.8330 -3.6180 6.0397 39 1 0.0366 -5.9539 5.3051 40 1 1.5070 -5.5937 4.3624 41 1 2.5213 -5.3930 6.8337 42 1 2.4723 -6.9179 5.9318 43 1 1.6475 -6.9505 8.3802 44 1 0.6283 -7.7329 7.1594 45 1 -0.5379 -6.2265 8.9061 46 1 -0.9755 -5.9996 7.2038 47 1 1.2663 -4.3437 8.2318 48 1 -0.3679 -3.9649 8.8369 49 1 -0.2283 -2.6773 6.8564 50 1 -1.0950 -4.1334 6.3337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237194364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:28 Heat of formation + Delta-G solvation = -115.797514 kcal Electronic energy + Delta-G solvation = -27468.351390 eV Core-core repulsion = 23655.464823 eV Total energy + Delta-G solvation = -3812.886567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33292 -38.35070 -37.47743 -37.24816 -36.87855 -35.34958 -34.49878 -33.05276 -31.67105 -30.26433 -27.99826 -26.77506 -25.66992 -24.50258 -23.83993 -23.08819 -21.41499 -20.41276 -20.15356 -19.16444 -18.69415 -18.24480 -17.57148 -17.09933 -16.66525 -16.36044 -16.03026 -15.86081 -15.44265 -15.23612 -15.15145 -14.77461 -14.58490 -14.49493 -14.07005 -13.99388 -13.90310 -13.50910 -13.40533 -13.20828 -13.09986 -13.06924 -12.98786 -12.93615 -12.85091 -12.45863 -12.34431 -12.23660 -12.02891 -11.87411 -11.74624 -11.69930 -11.44492 -11.32259 -11.19511 -11.05323 -10.77642 -10.50649 -9.76742 -9.33127 -8.28763 -6.34570 -0.37069 1.37559 1.41878 1.50176 2.00141 2.36297 2.60689 3.05528 3.17045 3.47446 3.66769 3.88792 3.94338 4.02316 4.05903 4.17211 4.24876 4.29931 4.37373 4.49760 4.51455 4.53529 4.57873 4.65519 4.69460 4.74072 4.88714 4.91017 4.94508 4.98346 5.03946 5.07606 5.15152 5.16034 5.27782 5.32129 5.35290 5.35749 5.39139 5.45907 5.48829 5.52003 5.60329 5.72655 6.05740 6.14244 6.31446 6.47080 6.68632 7.28709 8.88670 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002332 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.450201 B =12003.553033 C =12435.532795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.998 5.998 3 C 0.235 3.765 4 C -0.545 4.545 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.228 1.228 12 S 2.800 3.200 13 O -1.011 7.011 14 O -1.011 7.011 15 N -1.116 6.116 16 C 0.116 3.884 17 C 0.060 3.940 18 N -0.689 5.689 19 C 0.097 3.903 20 C -0.145 4.145 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.105 4.105 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.347 0.653 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -17.962 26.965 33.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.840 5.840 3 C 0.110 3.890 4 C -0.584 4.584 5 H 0.047 0.953 6 C -0.193 4.193 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.150 1.150 12 S 2.808 3.192 13 O -0.995 6.995 14 O -0.994 6.994 15 N -0.881 5.881 16 C -0.011 4.011 17 C -0.070 4.070 18 N -0.320 5.320 19 C -0.013 4.013 20 C -0.184 4.184 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.143 4.143 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.259 0.741 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.166 0.834 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.864 -17.659 26.314 32.425 hybrid contribution 1.003 -0.148 -0.431 1.101 sum -5.861 -17.807 25.883 31.959 Atomic orbital electron populations 1.21649 0.77801 1.03543 1.02948 1.57275 1.15853 1.21385 1.89438 1.19212 0.92048 0.82385 0.95375 1.21731 1.31742 1.10954 0.93983 0.95300 1.25967 0.96540 0.98113 0.98656 1.70072 1.42164 1.24952 1.21657 0.85770 0.79710 0.77562 0.80332 1.19585 1.20451 1.15017 1.01137 0.71956 0.72543 0.73566 1.93576 1.41127 1.85175 1.79609 1.93504 1.69128 1.61222 1.75575 1.55673 1.15568 1.85044 1.31783 1.21340 0.86165 1.01222 0.92338 1.22026 0.93373 0.98848 0.92803 1.60630 1.12162 1.51001 1.08215 1.20523 0.99354 0.90927 0.90448 1.22043 1.01162 0.96570 0.98593 1.21243 0.98136 0.99967 0.96019 1.21904 0.96940 0.98542 0.97953 1.21346 0.97920 0.94983 1.01352 1.21271 1.01765 0.95351 0.96711 1.20402 0.98646 1.01040 0.94244 0.89743 0.91348 0.91066 0.92557 0.94618 0.92365 0.74111 0.90743 0.90032 0.89888 0.94042 0.83396 0.91198 0.91114 0.92496 0.92148 0.92514 0.92051 0.92370 0.91939 0.92262 0.91792 0.91293 0.92016 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.69 10.69 127.77 1.37 4.06 16 2 N -1.00 -38.88 3.23 -543.22 -1.75 -40.64 16 3 C 0.23 10.72 4.16 85.63 0.36 11.08 16 4 C -0.54 -31.81 9.93 25.60 0.25 -31.55 16 5 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 6 C 0.00 0.29 5.47 84.66 0.46 0.75 16 7 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 8 Si 0.94 43.07 27.37 68.60 1.88 44.95 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.23 -8.95 6.69 99.48 0.67 -8.29 16 12 S 2.80 105.59 6.09 -56.49 -0.34 105.24 16 13 O -1.01 -47.65 16.99 -128.00 -2.18 -49.82 16 14 O -1.01 -41.08 16.34 -128.00 -2.09 -43.17 16 15 N -1.12 -28.03 6.05 -187.51 -1.13 -29.17 16 16 C 0.12 2.27 6.52 86.38 0.56 2.83 16 17 C 0.06 0.93 5.58 86.30 0.48 1.41 16 18 N -0.69 -9.48 6.15 -501.28 -3.08 -12.56 16 19 C 0.10 1.17 1.97 43.06 0.08 1.25 16 20 C -0.14 -1.63 4.92 30.20 0.15 -1.48 16 21 C -0.12 -1.22 5.31 30.14 0.16 -1.05 16 22 C -0.12 -1.08 5.85 31.32 0.18 -0.90 16 23 C -0.12 -1.07 5.31 30.14 0.16 -0.91 16 24 C -0.11 -1.08 5.61 30.20 0.17 -0.91 16 25 C -0.11 -1.19 4.77 28.74 0.14 -1.06 16 26 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 27 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 28 H 0.07 2.18 7.05 -2.39 -0.02 2.16 16 29 H 0.06 2.32 7.51 -2.39 -0.02 2.31 16 30 H 0.04 1.61 6.66 -2.39 -0.02 1.59 16 31 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 32 H 0.42 8.93 8.66 -96.74 -0.84 8.09 16 33 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 34 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 35 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 36 H 0.04 0.63 7.10 -2.39 -0.02 0.61 16 37 H 0.35 4.36 8.51 -89.69 -0.76 3.59 16 38 H 0.07 0.92 7.11 -2.39 -0.02 0.90 16 39 H 0.07 0.79 6.98 -2.39 -0.02 0.77 16 40 H 0.06 0.73 6.99 -2.39 -0.02 0.71 16 41 H 0.06 0.65 6.63 -2.38 -0.02 0.63 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.57 6.63 -2.39 -0.02 0.55 16 47 H 0.06 0.64 6.98 -2.39 -0.02 0.62 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 0.70 7.46 -2.39 -0.02 0.68 16 Total: -1.00 -76.71 392.69 -4.59 -81.29 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.71 Total: 20.50 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.53 Total: -16.48 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -5.67 Total: -142.51 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -4.27 Total: -92.99 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 105.59 SS G_CDS: -0.34 Total: 105.24 kcal Total: -76.71 -4.59 -81.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.504 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds