Wall clock time and date at job start Tue Mar 31 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00219 * 2 1 4 4 H 1.48495 * 109.47326 * 240.00581 * 3 2 1 5 5 H 1.48503 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46593 * 120.00466 * 3 2 1 7 7 C 1.37877 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99699 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97994 * 124.99756 * 10 9 7 12 12 C 1.35234 * 107.86221 * 179.97438 * 11 10 9 13 13 C 1.40396 * 107.86757 * 359.97438 * 12 11 10 14 14 N 1.40200 * 125.97280 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.97438 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 H 1.08995 * 110.80696 * 34.29738 * 18 17 15 20 20 C 1.55332 * 110.90835 * 270.66928 * 18 17 15 21 21 C 1.54795 * 104.99238 * 219.60572 * 20 18 17 22 22 N 1.46332 * 105.96166 * 356.35939 * 21 20 18 23 23 C 1.45540 * 117.21881 * 151.93228 * 22 21 20 24 24 C 1.53636 * 107.85653 * 174.44509 * 23 22 21 25 25 C 1.52821 * 110.64860 * 57.12714 * 24 23 22 26 26 C 1.53629 * 110.61441 * 306.13702 * 25 24 23 27 27 C 1.48696 * 105.52699 * 29.47844 * 22 21 20 28 28 H 1.08996 * 111.09087 * 74.61888 * 27 22 21 29 29 N 1.31210 * 108.05788 * 0.26522 * 13 12 11 30 30 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47506 * 59.99924 * 9 7 2 32 32 H 1.09004 * 109.47122 * 299.99694 * 9 7 2 33 33 H 1.08004 * 126.06815 * 359.97438 * 11 10 9 34 34 H 1.08004 * 126.06428 * 179.97438 * 12 11 10 35 35 H 0.97000 * 120.00293 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 37 37 H 1.09000 * 110.33817 * 338.48542 * 20 18 17 38 38 H 1.09001 * 110.33939 * 100.62373 * 20 18 17 39 39 H 1.09000 * 110.15589 * 115.48152 * 21 20 18 40 40 H 1.08998 * 110.15767 * 237.23426 * 21 20 18 41 41 H 1.09000 * 109.78043 * 294.03432 * 23 22 21 42 42 H 1.08994 * 109.78119 * 54.79938 * 23 22 21 43 43 H 1.09003 * 109.24206 * 177.43431 * 24 23 22 44 44 H 1.09009 * 109.23969 * 296.82622 * 24 23 22 45 45 H 1.09006 * 109.24298 * 66.42941 * 25 24 23 46 46 H 1.09004 * 109.24871 * 185.87815 * 25 24 23 47 47 H 1.08999 * 109.83287 * 175.93078 * 26 25 24 48 48 H 1.09002 * 109.83500 * 296.81396 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2420 -4.6224 0.8942 12 6 3.2601 -5.4430 0.5493 13 6 3.8676 -4.9156 -0.6013 14 7 4.9629 -5.4673 -1.2807 15 6 5.5274 -6.6072 -0.8355 16 8 5.0866 -7.1575 0.1551 17 7 6.5839 -7.1345 -1.4855 18 6 7.2013 -8.3705 -0.9981 19 1 6.4515 -9.0344 -0.5680 20 6 8.3234 -8.0614 0.0306 21 6 9.4521 -9.0701 -0.2929 22 7 8.9337 -9.9252 -1.3612 23 6 9.9037 -10.5133 -2.2730 24 6 9.1502 -11.4704 -3.2093 25 6 8.0379 -10.7321 -3.9531 26 6 7.1145 -10.0061 -2.9630 27 6 7.9796 -9.0763 -2.1229 28 1 8.5079 -8.3540 -2.7453 29 7 3.2344 -3.8134 -0.9267 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5780 -4.7521 1.7361 34 1 3.5538 -6.3441 1.0672 35 1 5.3148 -5.0281 -2.0708 36 1 6.9354 -6.6957 -2.2759 37 1 8.6812 -7.0394 -0.0948 38 1 7.9581 -8.2122 1.0464 39 1 10.3421 -8.5412 -0.6338 40 1 9.6846 -9.6687 0.5878 41 1 10.3842 -9.7283 -2.8569 42 1 10.6548 -11.0645 -1.7073 43 1 9.8493 -11.8898 -3.9328 44 1 8.7144 -12.2786 -2.6218 45 1 8.4817 -10.0033 -4.6314 46 1 7.4533 -11.4495 -4.5292 47 1 6.3702 -9.4261 -3.5087 48 1 6.6179 -10.7324 -2.3196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266366347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:46 Heat of formation + Delta-G solvation = 59.331351 kcal Electronic energy + Delta-G solvation = -28186.704094 eV Core-core repulsion = 24278.260485 eV Total energy + Delta-G solvation = -3908.443609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90861 -40.37085 -39.23886 -35.83082 -34.63115 -34.18394 -33.30611 -31.73015 -30.68273 -29.55106 -29.24876 -27.19032 -26.37871 -23.52578 -23.22638 -22.11180 -21.99172 -20.90224 -20.59007 -19.98644 -19.68158 -17.97093 -16.97897 -16.55340 -16.22994 -16.08229 -15.35622 -15.28940 -15.13575 -14.78984 -14.55600 -14.15977 -14.08576 -13.80474 -13.76607 -13.66146 -13.12139 -12.78507 -12.71908 -12.41897 -12.24643 -12.14731 -11.76698 -11.72638 -11.58602 -11.22707 -11.05598 -10.98621 -10.85750 -10.80626 -10.68344 -10.41184 -10.24078 -10.06128 -9.67001 -9.48474 -9.21564 -8.73266 -8.61381 -8.07479 -7.38796 -6.22624 -4.27604 2.35233 2.68770 3.13343 3.26267 3.29436 3.33696 3.43982 3.74022 3.85684 4.07115 4.26493 4.29703 4.39258 4.51300 4.65502 4.72798 4.75445 4.85128 4.88545 5.06513 5.10957 5.12312 5.25019 5.30771 5.46194 5.48265 5.53834 5.59263 5.61756 5.70654 5.75765 5.81669 5.86510 5.90238 6.02419 6.21348 6.31104 6.54084 6.57660 6.63180 6.84144 6.90047 7.03276 7.13138 7.52494 7.71214 7.84567 7.99868 8.09423 8.61449 8.68882 8.82627 9.37737 10.85974 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.001970 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.924440 B =14210.984625 C =14368.546726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.644 5.644 15 C 0.715 3.285 16 O -0.564 6.564 17 N -0.737 5.737 18 C 0.172 3.828 19 H 0.108 0.892 20 C -0.143 4.143 21 C 0.052 3.948 22 N -0.534 5.534 23 C 0.062 3.938 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.106 4.106 27 C 0.062 3.938 28 H 0.058 0.942 29 N -0.308 5.308 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.406 0.594 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.957 -21.507 -5.891 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.294 5.294 15 C 0.414 3.586 16 O -0.439 6.439 17 N -0.393 5.393 18 C 0.066 3.934 19 H 0.126 0.874 20 C -0.182 4.182 21 C -0.076 4.076 22 N -0.259 5.259 23 C -0.066 4.066 24 C -0.153 4.153 25 C -0.158 4.158 26 C -0.143 4.143 27 C -0.046 4.046 28 H 0.076 0.924 29 N -0.139 5.139 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.026 -21.262 -5.560 28.425 hybrid contribution 1.339 1.495 -0.575 2.088 sum 19.366 -19.767 -6.135 28.345 Atomic orbital electron populations 1.69911 1.06018 1.27690 1.49752 1.24948 0.94992 0.99523 0.94659 0.86386 0.79371 0.81828 0.78891 1.19977 1.21063 1.20062 1.21220 0.93949 0.89419 1.52048 0.91381 1.19725 0.85618 0.81291 0.99227 1.49048 1.23128 1.19767 1.18329 1.22555 1.00334 0.90303 0.96741 1.21510 1.02051 1.06473 1.01684 1.18779 0.90724 0.93991 0.94344 1.41386 1.31610 1.25025 1.31342 1.15595 0.79862 0.80167 0.82953 1.90872 1.64511 1.62151 1.26390 1.44980 1.33513 1.28137 1.32682 1.21503 0.94413 0.84369 0.93128 0.87390 1.23118 0.95103 0.98971 1.01022 1.22514 0.96217 0.93837 0.95018 1.62660 1.18417 1.33173 1.11654 1.21957 0.93759 0.97196 0.93721 1.21603 0.97503 0.98394 0.97814 1.21577 0.96996 0.99481 0.97749 1.21508 0.97142 0.98362 0.97332 1.22735 0.94005 0.93868 0.94012 0.92375 1.77321 1.03838 1.16173 1.16599 0.92297 0.93766 0.92559 0.81551 0.82170 0.75951 0.77068 0.90898 0.89965 0.94232 0.90079 0.94936 0.90626 0.91685 0.91041 0.92464 0.91650 0.91242 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.75 9.23 -34.44 -0.32 -15.07 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.62 6.26 -5.19 -0.03 6.59 16 10 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.76 9.60 -39.84 -0.38 -6.14 16 13 C 0.28 5.58 8.11 -154.36 -1.25 4.32 16 14 N -0.64 -9.95 5.46 -15.51 -0.08 -10.03 16 15 C 0.72 10.35 8.53 -86.92 -0.74 9.61 16 16 O -0.56 -10.09 13.16 5.28 0.07 -10.02 16 17 N -0.74 -7.27 5.16 -56.99 -0.29 -7.56 16 18 C 0.17 1.62 2.91 -66.21 -0.19 1.42 16 19 H 0.11 1.25 7.59 -51.93 -0.39 0.86 16 20 C -0.14 -1.27 6.73 -24.55 -0.17 -1.43 16 21 C 0.05 0.39 6.86 -3.19 -0.02 0.37 16 22 N -0.53 -4.09 4.65 -225.09 -1.05 -5.14 16 23 C 0.06 0.39 5.85 -4.23 -0.02 0.37 16 24 C -0.12 -0.66 6.06 -26.49 -0.16 -0.82 16 25 C -0.12 -0.72 5.94 -26.50 -0.16 -0.88 16 26 C -0.11 -0.76 5.67 -26.77 -0.15 -0.91 16 27 C 0.06 0.47 2.22 -66.61 -0.15 0.32 16 28 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 29 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 34 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 35 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 36 H 0.40 2.81 8.59 -40.82 -0.35 2.46 16 37 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.27 8.04 -51.93 -0.42 -0.15 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.20 8.05 -51.93 -0.42 -0.21 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -32.52 386.27 -11.40 -43.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.70 Total: 5.59 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -4.04 Total: 0.17 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.53 Total: -61.90 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.52 -11.40 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266366347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.257 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds