Wall clock time and date at job start Tue Mar 31 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00219 * 2 1 4 4 H 1.48495 * 109.47326 * 240.00581 * 3 2 1 5 5 H 1.48503 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46593 * 120.00466 * 3 2 1 7 7 C 1.37877 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99699 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97994 * 124.99756 * 10 9 7 12 12 C 1.35234 * 107.86221 * 179.97438 * 11 10 9 13 13 C 1.40396 * 107.86757 * 359.97438 * 12 11 10 14 14 N 1.40200 * 125.97280 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.97438 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 H 1.08995 * 110.80696 * 34.29738 * 18 17 15 20 20 C 1.55332 * 110.90835 * 270.66928 * 18 17 15 21 21 C 1.54795 * 104.99238 * 219.60572 * 20 18 17 22 22 N 1.46332 * 105.96166 * 356.35939 * 21 20 18 23 23 C 1.45540 * 117.21881 * 151.93228 * 22 21 20 24 24 C 1.53636 * 107.85653 * 174.44509 * 23 22 21 25 25 C 1.52821 * 110.64860 * 57.12714 * 24 23 22 26 26 C 1.53629 * 110.61441 * 306.13702 * 25 24 23 27 27 C 1.48696 * 105.52699 * 29.47844 * 22 21 20 28 28 H 1.08996 * 111.09087 * 74.61888 * 27 22 21 29 29 N 1.31210 * 108.05788 * 0.26522 * 13 12 11 30 30 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47506 * 59.99924 * 9 7 2 32 32 H 1.09004 * 109.47122 * 299.99694 * 9 7 2 33 33 H 1.08004 * 126.06815 * 359.97438 * 11 10 9 34 34 H 1.08004 * 126.06428 * 179.97438 * 12 11 10 35 35 H 0.97000 * 120.00293 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 37 37 H 1.09000 * 110.33817 * 338.48542 * 20 18 17 38 38 H 1.09001 * 110.33939 * 100.62373 * 20 18 17 39 39 H 1.09000 * 110.15589 * 115.48152 * 21 20 18 40 40 H 1.08998 * 110.15767 * 237.23426 * 21 20 18 41 41 H 1.09000 * 109.78043 * 294.03432 * 23 22 21 42 42 H 1.08994 * 109.78119 * 54.79938 * 23 22 21 43 43 H 1.09003 * 109.24206 * 177.43431 * 24 23 22 44 44 H 1.09009 * 109.23969 * 296.82622 * 24 23 22 45 45 H 1.09006 * 109.24298 * 66.42941 * 25 24 23 46 46 H 1.09004 * 109.24871 * 185.87815 * 25 24 23 47 47 H 1.08999 * 109.83287 * 175.93078 * 26 25 24 48 48 H 1.09002 * 109.83500 * 296.81396 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2420 -4.6224 0.8942 12 6 3.2601 -5.4430 0.5493 13 6 3.8676 -4.9156 -0.6013 14 7 4.9629 -5.4673 -1.2807 15 6 5.5274 -6.6072 -0.8355 16 8 5.0866 -7.1575 0.1551 17 7 6.5839 -7.1345 -1.4855 18 6 7.2013 -8.3705 -0.9981 19 1 6.4515 -9.0344 -0.5680 20 6 8.3234 -8.0614 0.0306 21 6 9.4521 -9.0701 -0.2929 22 7 8.9337 -9.9252 -1.3612 23 6 9.9037 -10.5133 -2.2730 24 6 9.1502 -11.4704 -3.2093 25 6 8.0379 -10.7321 -3.9531 26 6 7.1145 -10.0061 -2.9630 27 6 7.9796 -9.0763 -2.1229 28 1 8.5079 -8.3540 -2.7453 29 7 3.2344 -3.8134 -0.9267 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5780 -4.7521 1.7361 34 1 3.5538 -6.3441 1.0672 35 1 5.3148 -5.0281 -2.0708 36 1 6.9354 -6.6957 -2.2759 37 1 8.6812 -7.0394 -0.0948 38 1 7.9581 -8.2122 1.0464 39 1 10.3421 -8.5412 -0.6338 40 1 9.6846 -9.6687 0.5878 41 1 10.3842 -9.7283 -2.8569 42 1 10.6548 -11.0645 -1.7073 43 1 9.8493 -11.8898 -3.9328 44 1 8.7144 -12.2786 -2.6218 45 1 8.4817 -10.0033 -4.6314 46 1 7.4533 -11.4495 -4.5292 47 1 6.3702 -9.4261 -3.5087 48 1 6.6179 -10.7324 -2.3196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266366347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:45 Heat of formation + Delta-G solvation = 37.810841 kcal Electronic energy + Delta-G solvation = -28187.637294 eV Core-core repulsion = 24278.260485 eV Total energy + Delta-G solvation = -3909.376809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23707 -41.41081 -40.35372 -36.66476 -36.05054 -35.30161 -34.88232 -32.91329 -32.01180 -30.90838 -30.15822 -28.63463 -27.56846 -25.04657 -24.05660 -23.38652 -22.60390 -22.11644 -21.63218 -21.27342 -20.60424 -19.14717 -18.67777 -18.24127 -17.46198 -16.87627 -16.70256 -16.48403 -16.04305 -15.92498 -15.66703 -15.48210 -15.34938 -14.70088 -14.54335 -14.37838 -14.26133 -14.23053 -13.78565 -13.72218 -13.64858 -13.36197 -13.02194 -12.90396 -12.71466 -12.39054 -12.27077 -12.16019 -12.06532 -11.81709 -11.62979 -11.51583 -11.42562 -11.38625 -11.20355 -11.11234 -10.71014 -10.18874 -9.71027 -9.29095 -9.04059 -8.31573 -6.45768 1.07913 1.12917 1.38815 1.40769 1.49614 1.71620 2.09411 2.36499 2.41897 2.90029 2.99833 3.25154 3.43215 3.65323 3.98552 3.99957 4.03497 4.11487 4.17412 4.22792 4.29734 4.34573 4.50690 4.54062 4.67038 4.76635 4.81474 4.87858 4.90577 4.92684 4.95704 4.97637 5.03781 5.05657 5.09737 5.15168 5.17901 5.26763 5.33047 5.48284 5.51299 5.57740 5.77367 5.89010 5.97199 5.99110 6.29617 6.30859 6.64654 6.77040 7.16241 7.23898 7.44207 8.75594 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.001970 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.924440 B =14210.984625 C =14368.546726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.715 3.285 16 O -0.598 6.598 17 N -0.713 5.713 18 C 0.170 3.830 19 H 0.084 0.916 20 C -0.140 4.140 21 C 0.058 3.942 22 N -0.545 5.545 23 C 0.061 3.939 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.106 4.106 27 C 0.072 3.928 28 H 0.071 0.929 29 N -0.347 5.347 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.166 0.834 35 H 0.421 0.579 36 H 0.413 0.587 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.988 -21.805 -6.590 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.030 3.970 14 N -0.288 5.288 15 C 0.414 3.586 16 O -0.476 6.476 17 N -0.369 5.369 18 C 0.064 3.936 19 H 0.102 0.898 20 C -0.180 4.180 21 C -0.070 4.070 22 N -0.271 5.271 23 C -0.067 4.067 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.144 4.144 27 C -0.037 4.037 28 H 0.089 0.911 29 N -0.178 5.178 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.258 0.742 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.109 -21.590 -6.300 30.169 hybrid contribution 0.765 1.434 -0.357 1.664 sum 20.874 -20.156 -6.657 29.771 Atomic orbital electron populations 1.69992 1.07195 1.28796 1.49917 1.25751 0.95868 1.02736 0.93949 0.85401 0.78275 0.77854 0.78898 1.19809 1.19832 1.19518 1.21369 0.93372 0.90966 1.52814 0.92937 1.19329 0.85684 0.81513 0.98082 1.48812 1.23777 1.20349 1.19782 1.23147 1.00475 0.88944 0.96698 1.21678 1.02169 1.06637 1.01884 1.19068 0.90917 0.92917 0.94130 1.41368 1.30510 1.25306 1.31582 1.15730 0.80418 0.79655 0.82755 1.90846 1.65719 1.62947 1.28054 1.44788 1.31792 1.27865 1.32504 1.21532 0.94064 0.83638 0.94357 0.89770 1.23064 0.95358 0.99619 0.99950 1.22462 0.95824 0.93518 0.95222 1.62670 1.19060 1.33269 1.12094 1.22028 0.93619 0.97391 0.93657 1.21600 0.97632 0.97993 0.97909 1.21565 0.96863 0.99652 0.97470 1.21499 0.97365 0.98129 0.97386 1.22654 0.93779 0.93929 0.93325 0.91078 1.77242 1.04910 1.17943 1.17750 0.91860 0.96063 0.92406 0.78304 0.81641 0.74217 0.74999 0.90684 0.91487 0.93089 0.89856 0.94342 0.89981 0.90195 0.91921 0.91703 0.91243 0.91241 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -31.02 9.23 25.60 0.24 -30.79 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.27 6.26 85.63 0.54 14.81 16 10 N -0.35 -16.41 3.67 -351.84 -1.29 -17.70 16 11 C 0.06 2.24 11.43 83.52 0.96 3.20 16 12 C -0.29 -11.71 9.60 22.10 0.21 -11.49 16 13 C 0.29 11.50 8.11 133.31 1.08 12.59 16 14 N -0.64 -19.16 5.46 -321.23 -1.75 -20.91 16 15 C 0.72 20.16 8.53 179.05 1.53 21.68 16 16 O -0.60 -21.30 13.16 -4.01 -0.05 -21.35 16 17 N -0.71 -13.12 5.16 -452.49 -2.34 -15.45 16 18 C 0.17 3.05 2.91 46.10 0.13 3.18 16 19 H 0.08 1.98 7.59 -2.39 -0.02 1.96 16 20 C -0.14 -2.37 6.73 32.01 0.22 -2.15 16 21 C 0.06 0.77 6.86 87.02 0.60 1.36 16 22 N -0.55 -7.44 4.65 -866.06 -4.03 -11.47 16 23 C 0.06 0.63 5.85 86.77 0.51 1.14 16 24 C -0.11 -1.07 6.06 30.75 0.19 -0.88 16 25 C -0.12 -1.17 5.94 30.75 0.18 -0.99 16 26 C -0.11 -1.39 5.67 30.57 0.17 -1.21 16 27 C 0.07 0.95 2.22 44.64 0.10 1.05 16 28 H 0.07 0.80 7.98 -2.39 -0.02 0.78 16 29 N -0.35 -16.26 12.42 -54.44 -0.68 -16.94 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 33 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 34 H 0.17 6.50 5.91 -2.91 -0.02 6.49 16 35 H 0.42 9.96 8.84 -92.71 -0.82 9.14 16 36 H 0.41 4.94 8.59 -92.71 -0.80 4.14 16 37 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 0.58 8.04 -2.39 -0.02 0.56 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 0.37 8.05 -2.39 -0.02 0.35 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.23 386.27 -1.35 -71.58 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.64 Total: 25.68 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.11 Total: 12.92 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -9.80 Total: -134.54 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.23 -1.35 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266366347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.390 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds