Wall clock time and date at job start Tue Mar 31 2020 18:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00036 * 2 1 4 4 H 1.48492 * 109.46891 * 269.99251 * 3 2 1 5 5 H 1.48497 * 109.47159 * 29.99832 * 3 2 1 6 6 H 1.48502 * 109.46695 * 149.99614 * 3 2 1 7 7 C 1.37875 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47426 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47344 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99995 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00156 * 4.98772 * 12 11 10 14 14 N 1.34780 * 120.00136 * 184.98228 * 12 11 10 15 15 C 1.46926 * 120.62527 * 354.79437 * 14 12 11 16 16 C 1.53196 * 108.77451 * 233.58250 * 15 14 12 17 17 C 1.53039 * 109.31676 * 305.37339 * 16 15 14 18 18 C 1.53037 * 109.53911 * 61.35670 * 17 16 15 19 19 H 1.09004 * 109.51884 * 58.61152 * 18 17 16 20 20 C 1.50697 * 109.49910 * 178.68347 * 18 17 16 21 21 N 1.30719 * 125.52444 * 59.86656 * 20 18 17 22 22 N 1.40443 * 106.79488 * 179.97438 * 21 20 18 23 23 H 0.97000 * 126.82345 * 179.97438 * 22 21 20 24 24 C 1.34433 * 106.35495 * 0.02562 * 22 21 20 25 25 C 1.50693 * 125.96539 * 180.02562 * 24 22 21 26 26 C 1.53005 * 117.49550 * 33.59483 * 25 24 22 27 27 C 1.52999 * 60.00006 * 252.50913 * 26 25 24 28 28 N 1.30834 * 108.07418 * 359.97438 * 24 22 21 29 29 C 1.46924 * 120.63312 * 174.77522 * 14 12 11 30 30 H 0.97002 * 120.00060 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99823 * 9 7 2 32 32 H 1.09000 * 109.47586 * 299.99868 * 9 7 2 33 33 H 1.08996 * 109.47125 * 59.99858 * 10 9 7 34 34 H 1.09005 * 109.47535 * 300.00311 * 10 9 7 35 35 H 0.96997 * 119.99592 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.59277 * 353.37277 * 15 14 12 37 37 H 1.09002 * 109.58393 * 113.80597 * 15 14 12 38 38 H 1.09007 * 109.49245 * 65.32260 * 16 15 14 39 39 H 1.09003 * 109.49908 * 185.41375 * 16 15 14 40 40 H 1.09004 * 109.45575 * 301.34101 * 17 16 15 41 41 H 1.08995 * 109.46107 * 181.38786 * 17 16 15 42 42 H 1.08995 * 115.55308 * 179.30117 * 25 24 22 43 43 H 1.08993 * 117.50142 * 0.02562 * 26 25 24 44 44 H 1.09007 * 117.49823 * 145.02077 * 26 25 24 45 45 H 1.09003 * 117.50270 * 252.51255 * 27 26 25 46 46 H 1.09000 * 117.51346 * 107.48274 * 27 26 25 47 47 H 1.09000 * 109.58493 * 6.62315 * 29 14 12 48 48 H 1.08998 * 109.58524 * 246.20463 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0980 -0.0007 13 8 3.3990 -6.1001 0.0908 14 7 1.5165 -7.2630 -0.1027 15 6 0.0474 -7.2842 -0.0993 16 6 -0.4292 -8.2530 0.9875 17 6 0.2188 -9.6215 0.7654 18 6 1.7400 -9.4903 0.8685 19 1 2.0059 -9.0959 1.8492 20 6 2.3754 -10.8439 0.6817 21 7 2.2610 -11.5967 -0.3809 22 7 3.0066 -12.7612 -0.1355 23 1 3.1195 -13.5162 -0.7340 24 6 3.5318 -12.6224 1.0942 25 6 4.4130 -13.6217 1.7982 26 6 5.3677 -14.4515 0.9374 27 6 4.1310 -15.1059 1.5565 28 7 3.1452 -11.4676 1.5726 29 6 2.2412 -8.5357 -0.2197 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5568 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8719 -3.6044 -0.8894 35 1 0.5427 -4.9307 -0.0008 36 1 -0.3322 -6.2843 0.1106 37 1 -0.3154 -7.6185 -1.0713 38 1 -0.1434 -7.8699 1.9672 39 1 -1.5137 -8.3514 0.9372 40 1 -0.0474 -9.9929 -0.2243 41 1 -0.1378 -10.3194 1.5229 42 1 4.7550 -13.3296 2.7910 43 1 5.3586 -14.2743 -0.1380 44 1 6.3382 -14.7054 1.3639 45 1 4.2878 -15.7903 2.3903 46 1 3.3079 -15.3596 0.8885 47 1 3.3092 -8.3613 -0.0892 48 1 2.0574 -8.9719 -1.2015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273240403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:39 Heat of formation + Delta-G solvation = 73.338155 kcal Electronic energy + Delta-G solvation = -27834.319570 eV Core-core repulsion = 23926.483341 eV Total energy + Delta-G solvation = -3907.836229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59028 -40.12708 -38.05871 -37.40663 -34.83669 -33.82968 -32.77197 -32.43498 -31.84685 -30.25420 -29.24781 -25.63522 -25.07349 -24.56806 -23.79749 -23.13707 -21.80720 -21.00421 -20.92269 -20.01694 -19.27099 -18.33185 -17.81490 -16.54687 -16.41354 -15.95749 -15.62203 -15.47652 -15.02829 -14.67932 -14.53880 -14.34275 -14.24465 -13.75198 -13.55743 -13.38774 -13.22000 -12.69320 -12.57085 -12.33534 -12.23649 -12.22823 -11.73411 -11.54962 -11.31853 -11.20520 -11.13810 -10.99189 -10.95644 -10.90142 -10.59108 -10.33444 -10.30113 -10.26464 -9.82477 -9.64389 -9.49073 -9.21819 -8.67775 -8.42033 -8.13346 -6.05514 -4.07776 1.15435 2.20388 2.41012 2.90797 3.25565 3.32641 3.35151 3.38635 3.43529 3.60614 4.00721 4.09718 4.19034 4.29429 4.40700 4.47972 4.55816 4.68790 4.79915 4.84828 4.88738 4.97929 5.14631 5.19705 5.31661 5.32339 5.33852 5.37544 5.46196 5.65645 5.70628 5.74686 5.83106 5.90860 5.94285 6.06166 6.20242 6.33134 6.45870 6.62937 6.64114 6.82975 7.06344 7.22905 7.60426 7.67965 7.78469 7.93885 8.29535 8.43118 8.96784 9.04132 9.56744 11.06156 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.001851 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.008373 B =15123.767668 C =15802.407119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.595 6.595 14 N -0.633 5.633 15 C 0.109 3.891 16 C -0.133 4.133 17 C -0.106 4.106 18 C -0.010 4.010 19 H 0.104 0.896 20 C 0.245 3.755 21 N -0.306 5.306 22 N -0.484 5.484 23 H 0.437 0.563 24 C 0.315 3.685 25 C -0.086 4.086 26 C -0.164 4.164 27 C -0.164 4.164 28 N -0.529 5.529 29 C 0.144 3.856 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.392 0.608 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -33.053 1.624 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.473 6.473 14 N -0.372 5.372 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.032 4.032 19 H 0.122 0.878 20 C -0.038 4.038 21 N -0.134 5.134 22 N -0.202 5.202 23 H 0.283 0.717 24 C 0.037 3.963 25 C -0.107 4.107 26 C -0.202 4.202 27 C -0.202 4.202 28 N -0.257 5.257 29 C 0.019 3.981 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.129 -32.452 1.384 32.551 hybrid contribution 0.042 0.228 -0.324 0.398 sum 2.171 -32.224 1.060 32.315 Atomic orbital electron populations 1.69955 1.06068 1.26793 1.50536 1.24990 0.94890 0.99367 0.95048 0.86512 0.79860 0.83028 0.78158 1.20603 1.21205 1.19728 1.21059 0.93287 0.90360 1.51134 0.92214 1.19325 0.94268 0.91093 0.97777 1.21601 0.95670 0.80453 1.00670 1.45696 1.09900 1.05254 1.78508 1.15941 0.85312 0.80392 0.77842 1.90880 1.12070 1.86147 1.58222 1.47203 1.05930 1.05212 1.78846 1.21659 0.80159 1.00480 0.99145 1.21930 1.00606 0.94809 0.99830 1.21524 0.92558 0.97586 1.02838 1.19995 0.94928 0.86047 1.02236 0.87820 1.24028 0.95125 0.97269 0.87353 1.78025 1.17604 0.94674 1.23094 1.47918 1.39476 1.17862 1.14941 0.71748 1.23220 0.94982 0.93740 0.84336 1.20436 1.00193 0.89016 1.01043 1.23157 0.95730 1.01876 0.99442 1.23152 0.99773 0.93202 1.04106 1.70344 1.17613 1.05588 1.32134 1.21283 0.98163 0.81843 0.96805 0.92908 0.96005 0.95953 0.92679 0.92872 0.77181 0.89794 0.91232 0.90918 0.90119 0.90932 0.91515 0.83849 0.88436 0.86839 0.86895 0.88495 0.88636 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.09 5.62 -4.04 -0.02 3.06 16 11 N -0.74 -13.80 5.46 -65.22 -0.36 -14.16 16 12 C 0.70 13.25 8.29 -86.92 -0.72 12.53 16 13 O -0.59 -13.51 15.77 5.29 0.08 -13.43 16 14 N -0.63 -9.15 2.97 -178.50 -0.53 -9.68 16 15 C 0.11 1.18 6.39 -3.71 -0.02 1.16 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C -0.11 -1.02 5.15 -26.69 -0.14 -1.15 16 18 C -0.01 -0.12 2.81 -91.66 -0.26 -0.37 16 19 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.25 3.04 6.65 -156.85 -1.04 2.00 16 21 N -0.31 -3.53 12.80 32.42 0.41 -3.12 16 22 N -0.48 -4.10 7.39 32.62 0.24 -3.86 16 23 H 0.44 2.14 8.96 -182.34 -1.63 0.51 16 24 C 0.31 2.92 7.67 -155.69 -1.19 1.73 16 25 C -0.09 -0.48 6.33 -91.77 -0.58 -1.06 16 26 C -0.16 -0.52 10.21 -26.73 -0.27 -0.79 16 27 C -0.16 -0.48 10.22 -26.73 -0.27 -0.75 16 28 N -0.53 -6.65 11.19 -8.16 -0.09 -6.74 16 29 C 0.14 1.95 5.71 -3.72 -0.02 1.93 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.39 6.36 5.96 -40.82 -0.24 6.12 16 36 H 0.08 0.90 5.65 -51.93 -0.29 0.60 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.11 0.24 8.14 -51.92 -0.42 -0.18 16 45 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.10 1.53 7.00 -51.93 -0.36 1.17 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -35.73 394.39 -12.68 -48.41 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.84 Total: 1.87 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -5.26 Total: 3.71 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.41 Total: -63.12 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.73 -12.68 -48.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273240403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.748 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds