Wall clock time and date at job start Tue Mar 31 2020 18:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00036 * 2 1 4 4 H 1.48492 * 109.46891 * 269.99251 * 3 2 1 5 5 H 1.48497 * 109.47159 * 29.99832 * 3 2 1 6 6 H 1.48502 * 109.46695 * 149.99614 * 3 2 1 7 7 C 1.37875 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47426 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47344 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99995 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00156 * 4.98772 * 12 11 10 14 14 N 1.34780 * 120.00136 * 184.98228 * 12 11 10 15 15 C 1.46926 * 120.62527 * 354.79437 * 14 12 11 16 16 C 1.53196 * 108.77451 * 233.58250 * 15 14 12 17 17 C 1.53039 * 109.31676 * 305.37339 * 16 15 14 18 18 C 1.53037 * 109.53911 * 61.35670 * 17 16 15 19 19 H 1.09004 * 109.51884 * 58.61152 * 18 17 16 20 20 C 1.50697 * 109.49910 * 178.68347 * 18 17 16 21 21 N 1.30719 * 125.52444 * 59.86656 * 20 18 17 22 22 N 1.40443 * 106.79488 * 179.97438 * 21 20 18 23 23 H 0.97000 * 126.82345 * 179.97438 * 22 21 20 24 24 C 1.34433 * 106.35495 * 0.02562 * 22 21 20 25 25 C 1.50693 * 125.96539 * 180.02562 * 24 22 21 26 26 C 1.53005 * 117.49550 * 33.59483 * 25 24 22 27 27 C 1.52999 * 60.00006 * 252.50913 * 26 25 24 28 28 N 1.30834 * 108.07418 * 359.97438 * 24 22 21 29 29 C 1.46924 * 120.63312 * 174.77522 * 14 12 11 30 30 H 0.97002 * 120.00060 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99823 * 9 7 2 32 32 H 1.09000 * 109.47586 * 299.99868 * 9 7 2 33 33 H 1.08996 * 109.47125 * 59.99858 * 10 9 7 34 34 H 1.09005 * 109.47535 * 300.00311 * 10 9 7 35 35 H 0.96997 * 119.99592 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.59277 * 353.37277 * 15 14 12 37 37 H 1.09002 * 109.58393 * 113.80597 * 15 14 12 38 38 H 1.09007 * 109.49245 * 65.32260 * 16 15 14 39 39 H 1.09003 * 109.49908 * 185.41375 * 16 15 14 40 40 H 1.09004 * 109.45575 * 301.34101 * 17 16 15 41 41 H 1.08995 * 109.46107 * 181.38786 * 17 16 15 42 42 H 1.08995 * 115.55308 * 179.30117 * 25 24 22 43 43 H 1.08993 * 117.50142 * 0.02562 * 26 25 24 44 44 H 1.09007 * 117.49823 * 145.02077 * 26 25 24 45 45 H 1.09003 * 117.50270 * 252.51255 * 27 26 25 46 46 H 1.09000 * 117.51346 * 107.48274 * 27 26 25 47 47 H 1.09000 * 109.58493 * 6.62315 * 29 14 12 48 48 H 1.08998 * 109.58524 * 246.20463 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0980 -0.0007 13 8 3.3990 -6.1001 0.0908 14 7 1.5165 -7.2630 -0.1027 15 6 0.0474 -7.2842 -0.0993 16 6 -0.4292 -8.2530 0.9875 17 6 0.2188 -9.6215 0.7654 18 6 1.7400 -9.4903 0.8685 19 1 2.0059 -9.0959 1.8492 20 6 2.3754 -10.8439 0.6817 21 7 2.2610 -11.5967 -0.3809 22 7 3.0066 -12.7612 -0.1355 23 1 3.1195 -13.5162 -0.7340 24 6 3.5318 -12.6224 1.0942 25 6 4.4130 -13.6217 1.7982 26 6 5.3677 -14.4515 0.9374 27 6 4.1310 -15.1059 1.5565 28 7 3.1452 -11.4676 1.5726 29 6 2.2412 -8.5357 -0.2197 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5568 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8719 -3.6044 -0.8894 35 1 0.5427 -4.9307 -0.0008 36 1 -0.3322 -6.2843 0.1106 37 1 -0.3154 -7.6185 -1.0713 38 1 -0.1434 -7.8699 1.9672 39 1 -1.5137 -8.3514 0.9372 40 1 -0.0474 -9.9929 -0.2243 41 1 -0.1378 -10.3194 1.5229 42 1 4.7550 -13.3296 2.7910 43 1 5.3586 -14.2743 -0.1380 44 1 6.3382 -14.7054 1.3639 45 1 4.2878 -15.7903 2.3903 46 1 3.3079 -15.3596 0.8885 47 1 3.3092 -8.3613 -0.0892 48 1 2.0574 -8.9719 -1.2015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273240403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:38 Heat of formation + Delta-G solvation = 50.364381 kcal Electronic energy + Delta-G solvation = -27835.315788 eV Core-core repulsion = 23926.483341 eV Total energy + Delta-G solvation = -3908.832446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.37044 -41.46330 -38.94327 -38.11075 -36.62265 -35.11329 -34.47853 -33.40565 -32.74197 -31.58165 -30.68966 -27.18147 -26.00087 -25.63973 -24.93971 -23.35510 -22.99474 -22.63765 -21.61106 -21.15476 -20.41544 -19.23715 -18.88766 -18.48211 -17.29197 -16.96669 -16.82326 -16.58348 -16.49310 -15.84159 -15.55235 -15.42658 -15.26833 -15.25294 -14.83940 -14.50203 -14.26289 -14.04933 -13.92021 -13.55745 -13.16300 -12.93092 -12.86961 -12.54807 -12.51638 -12.46577 -12.24521 -12.21786 -11.99401 -11.94265 -11.78172 -11.64927 -11.54904 -11.43334 -11.17650 -11.16726 -11.10394 -10.58858 -10.35324 -10.17824 -9.51663 -8.22385 -6.32409 0.41804 1.42352 1.43533 1.47740 1.55284 1.57633 1.73439 2.09619 2.41908 2.70571 2.90353 2.99561 3.12326 3.37034 3.57230 3.70125 3.75138 3.89953 3.93508 4.00540 4.10339 4.21279 4.25594 4.44508 4.48840 4.52459 4.57882 4.69437 4.71486 4.76741 4.87157 4.88583 4.95618 5.00488 5.03105 5.06739 5.13716 5.14009 5.23165 5.31248 5.36686 5.48878 5.53412 5.60649 5.79326 5.90781 6.07014 6.18743 6.80001 6.96908 6.99625 7.36541 7.52897 8.89453 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.001851 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.008373 B =15123.767668 C =15802.407119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.159 3.841 11 N -0.731 5.731 12 C 0.701 3.299 13 O -0.639 6.639 14 N -0.624 5.624 15 C 0.101 3.899 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.002 4.002 19 H 0.087 0.913 20 C 0.233 3.767 21 N -0.322 5.322 22 N -0.473 5.473 23 H 0.453 0.547 24 C 0.321 3.679 25 C -0.113 4.113 26 C -0.152 4.152 27 C -0.145 4.145 28 N -0.572 5.572 29 C 0.149 3.851 30 H 0.266 0.734 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.406 0.594 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -34.791 1.328 34.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.388 5.388 12 C 0.402 3.598 13 O -0.521 6.521 14 N -0.361 5.361 15 C -0.021 4.021 16 C -0.164 4.164 17 C -0.136 4.136 18 C -0.025 4.025 19 H 0.105 0.895 20 C -0.051 4.051 21 N -0.151 5.151 22 N -0.192 5.192 23 H 0.301 0.699 24 C 0.044 3.956 25 C -0.135 4.135 26 C -0.190 4.190 27 C -0.183 4.183 28 N -0.301 5.301 29 C 0.025 3.975 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.159 0.841 43 H 0.120 0.880 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.563 -34.260 1.069 34.312 hybrid contribution 0.220 0.626 -0.238 0.705 sum 1.782 -33.634 0.831 33.691 Atomic orbital electron populations 1.70053 1.07445 1.27959 1.50945 1.25845 0.95815 1.02975 0.94400 0.85448 0.78597 0.78509 0.78503 1.19758 1.20416 1.19238 1.21453 0.93577 0.91911 1.51612 0.92410 1.19123 0.94183 0.91503 0.96450 1.21105 0.94733 0.81132 0.99547 1.45380 1.10414 1.04282 1.78732 1.16060 0.84831 0.81283 0.77633 1.90847 1.14181 1.86936 1.60167 1.47226 1.07609 1.04001 1.77280 1.22006 0.77472 1.01438 1.01181 1.21911 1.02276 0.93692 0.98486 1.21482 0.90525 0.98090 1.03497 1.19862 0.96653 0.85590 1.00362 0.89518 1.24038 0.95664 0.97549 0.87803 1.77911 1.18562 0.95607 1.23015 1.47808 1.38707 1.17589 1.15099 0.69851 1.23798 0.94184 0.93323 0.84268 1.20602 1.01666 0.89853 1.01330 1.23288 0.96325 1.00052 0.99384 1.23286 0.99656 0.90958 1.04395 1.70311 1.18989 1.07331 1.33426 1.21246 0.96442 0.81701 0.98127 0.92542 0.97134 0.97193 0.93972 0.93866 0.75589 0.89565 0.89010 0.91805 0.87056 0.90215 0.90724 0.84080 0.88040 0.85483 0.85277 0.87785 0.91769 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.43 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.48 5.46 84.65 0.46 0.95 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -31.17 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.29 5.09 29.85 0.15 1.44 16 10 C 0.16 7.26 5.62 86.38 0.49 7.74 16 11 N -0.73 -27.72 5.46 -478.53 -2.62 -30.33 16 12 C 0.70 26.96 8.29 179.05 1.49 28.45 16 13 O -0.64 -30.23 15.77 -4.00 -0.06 -30.30 16 14 N -0.62 -18.05 2.97 -836.92 -2.49 -20.53 16 15 C 0.10 2.02 6.39 86.36 0.55 2.57 16 16 C -0.13 -2.02 6.08 30.67 0.19 -1.83 16 17 C -0.10 -1.72 5.15 30.62 0.16 -1.56 16 18 C 0.00 -0.06 2.81 -11.47 -0.03 -0.09 16 19 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 20 C 0.23 5.84 6.65 138.63 0.92 6.76 16 21 N -0.32 -7.29 12.80 -51.33 -0.66 -7.94 16 22 N -0.47 -7.57 7.39 -50.71 -0.37 -7.94 16 23 H 0.45 3.73 8.96 -213.10 -1.91 1.82 16 24 C 0.32 5.83 7.67 138.22 1.06 6.89 16 25 C -0.11 -1.14 6.33 -11.54 -0.07 -1.21 16 26 C -0.15 -0.64 10.21 30.60 0.31 -0.33 16 27 C -0.14 -0.49 10.22 30.59 0.31 -0.17 16 28 N -0.57 -14.68 11.19 -179.73 -2.01 -16.69 16 29 C 0.15 4.14 5.71 86.36 0.49 4.64 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.41 13.08 5.96 -92.71 -0.55 12.53 16 36 H 0.09 1.71 5.65 -2.39 -0.01 1.69 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.06 2.19 7.00 -2.39 -0.02 2.18 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -78.67 394.39 -0.66 -79.33 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -1.48 Total: 19.01 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.71 Total: 23.31 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -7.86 Total: -137.59 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -78.67 -0.66 -79.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273240403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.696 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds