Wall clock time and date at job start Tue Mar 31 2020 18:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00116 * 2 1 4 4 H 1.48494 * 109.47180 * 270.00303 * 3 2 1 5 5 H 1.48496 * 109.46544 * 30.00560 * 3 2 1 6 6 H 1.48498 * 109.46721 * 150.00105 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99644 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00403 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47268 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34768 * 120.00353 * 179.72045 * 11 10 9 13 13 O 1.21588 * 119.99750 * 355.29611 * 12 11 10 14 14 N 1.34776 * 120.00360 * 175.29509 * 12 11 10 15 15 C 1.46928 * 120.62874 * 5.23095 * 14 12 11 16 16 C 1.53187 * 108.77730 * 126.36878 * 15 14 12 17 17 C 1.53039 * 109.31301 * 54.63266 * 16 15 14 18 18 C 1.53032 * 109.54002 * 298.63530 * 17 16 15 19 19 H 1.08999 * 109.49758 * 301.41351 * 18 17 16 20 20 C 1.50703 * 109.50036 * 181.34867 * 18 17 16 21 21 N 1.30712 * 125.52371 * 300.02852 * 20 18 17 22 22 N 1.40451 * 106.79031 * 179.97438 * 21 20 18 23 23 H 0.96995 * 126.81961 * 180.02562 * 22 21 20 24 24 C 1.34425 * 106.35301 * 359.97438 * 22 21 20 25 25 C 1.50697 * 125.96048 * 180.02562 * 24 22 21 26 26 C 1.53005 * 117.49995 * 33.59264 * 25 24 22 27 27 C 1.52998 * 59.99919 * 252.51290 * 26 25 24 28 28 N 1.30832 * 108.07933 * 359.75257 * 24 22 21 29 29 C 1.46926 * 120.63194 * 184.94721 * 14 12 11 30 30 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46986 * 59.98878 * 9 7 2 32 32 H 1.09005 * 109.46457 * 299.99559 * 9 7 2 33 33 H 1.09003 * 109.47158 * 59.99654 * 10 9 7 34 34 H 1.09005 * 109.47313 * 299.99392 * 10 9 7 35 35 H 0.97009 * 119.99701 * 0.02562 * 11 10 9 36 36 H 1.09006 * 109.58636 * 246.15958 * 15 14 12 37 37 H 1.08999 * 109.58431 * 6.43391 * 15 14 12 38 38 H 1.09004 * 109.50017 * 174.58668 * 16 15 14 39 39 H 1.09001 * 109.49759 * 294.68378 * 16 15 14 40 40 H 1.09004 * 109.45892 * 58.65803 * 17 16 15 41 41 H 1.09001 * 109.45919 * 178.62362 * 17 16 15 42 42 H 1.08999 * 115.54995 * 179.30097 * 25 24 22 43 43 H 1.08999 * 117.49378 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49485 * 145.02044 * 26 25 24 45 45 H 1.09000 * 117.49418 * 252.50811 * 27 26 25 46 46 H 1.08997 * 117.49568 * 107.49222 * 27 26 25 47 47 H 1.09000 * 109.58564 * 353.42033 * 29 14 12 48 48 H 1.09004 * 109.58305 * 113.84694 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.1604 -3.8037 0.0055 13 8 5.5555 -4.8545 0.0969 14 7 7.5047 -3.8062 -0.0903 15 6 8.2578 -2.5446 -0.0863 16 6 9.3293 -2.6133 1.0063 17 6 10.1915 -3.8594 0.7919 18 6 9.3168 -5.1109 0.8938 19 1 8.8371 -5.1408 1.8721 20 6 10.1724 -6.3386 0.7155 21 7 10.8859 -6.6199 -0.3429 22 7 11.5219 -7.8462 -0.0894 23 1 12.1220 -8.3236 -0.6834 24 6 11.1345 -8.2263 1.1405 25 6 11.5586 -9.4850 1.8523 26 6 12.9758 -10.0001 1.5928 27 6 11.7731 -10.7391 1.0025 28 7 10.3296 -7.3100 1.6139 29 6 8.2455 -5.0708 -0.1944 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6807 0.8904 32 1 3.8751 -0.6797 -0.8896 33 1 3.6584 -3.1502 -0.8903 34 1 3.6579 -3.1506 0.8897 35 1 5.9715 -1.7965 0.0003 36 1 8.7337 -2.4000 -1.0563 37 1 7.5800 -1.7151 0.1152 38 1 9.9570 -1.7236 0.9568 39 1 8.8494 -2.6667 1.9835 40 1 10.6515 -3.8172 -0.1954 41 1 10.9701 -3.8977 1.5538 42 1 11.1493 -9.6195 2.8536 43 1 13.6014 -9.4282 0.9075 44 1 13.4991 -10.4734 2.4236 45 1 11.5054 -11.6986 1.4449 46 1 11.6076 -10.6537 -0.0714 47 1 7.5600 -5.9078 -0.0616 48 1 8.7204 -5.1364 -1.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273240405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:42 Heat of formation + Delta-G solvation = 77.746656 kcal Electronic energy + Delta-G solvation = -27904.134872 eV Core-core repulsion = 23996.489810 eV Total energy + Delta-G solvation = -3907.645062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62356 -40.21729 -38.10191 -37.47561 -34.96981 -33.89267 -32.75701 -32.46383 -31.90815 -30.42810 -29.64563 -25.80310 -25.11096 -24.63899 -23.78940 -23.15271 -21.84973 -20.97442 -20.80274 -20.08919 -19.32692 -18.35960 -17.87416 -16.87203 -16.56382 -16.03811 -15.71641 -15.54146 -15.07645 -14.74341 -14.49002 -14.38924 -14.14231 -13.86954 -13.64619 -13.46704 -13.31799 -12.83580 -12.69388 -12.52778 -12.35123 -12.25674 -11.76549 -11.60201 -11.47596 -11.31177 -11.24008 -11.14337 -11.06279 -10.95292 -10.36769 -10.34379 -10.32925 -10.19803 -9.92842 -9.70564 -9.64459 -9.28437 -8.75430 -8.58517 -8.25988 -6.07401 -4.07118 1.12534 2.17385 2.37642 2.82819 3.23606 3.27765 3.31984 3.35204 3.36651 3.52607 3.98325 4.05607 4.17279 4.22172 4.36990 4.40874 4.52621 4.62254 4.74047 4.77413 4.87170 4.92680 5.11667 5.15542 5.25546 5.26889 5.30805 5.33588 5.39837 5.58496 5.63252 5.68434 5.77349 5.87104 5.89064 6.01051 6.12742 6.15256 6.30332 6.53038 6.61210 6.63550 6.87164 7.06164 7.28943 7.30850 7.71454 7.75282 8.27508 8.49365 8.93277 8.98070 9.52790 11.05684 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.001933 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.969825 B =14483.085964 C =15124.005147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.742 5.742 12 C 0.705 3.295 13 O -0.591 6.591 14 N -0.633 5.633 15 C 0.109 3.891 16 C -0.133 4.133 17 C -0.107 4.107 18 C -0.010 4.010 19 H 0.104 0.896 20 C 0.245 3.755 21 N -0.306 5.306 22 N -0.484 5.484 23 H 0.437 0.563 24 C 0.316 3.684 25 C -0.086 4.086 26 C -0.164 4.164 27 C -0.163 4.163 28 N -0.529 5.529 29 C 0.144 3.856 30 H 0.264 0.736 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.144 0.856 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.362 -15.724 1.773 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.024 3.976 11 N -0.397 5.397 12 C 0.406 3.594 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.032 4.032 19 H 0.122 0.878 20 C -0.038 4.038 21 N -0.134 5.134 22 N -0.202 5.202 23 H 0.283 0.717 24 C 0.038 3.962 25 C -0.107 4.107 26 C -0.203 4.203 27 C -0.202 4.202 28 N -0.257 5.257 29 C 0.019 3.981 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.226 0.774 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.508 -15.850 1.524 35.303 hybrid contribution 1.104 0.874 -0.320 1.444 sum 32.613 -14.976 1.203 35.907 Atomic orbital electron populations 1.69901 1.06278 1.26992 1.50543 1.24997 0.94757 0.99110 0.94432 0.86751 0.80283 0.83585 0.78452 1.20269 1.21309 1.19084 1.20924 0.88649 0.94911 1.51473 0.90572 1.19792 0.97934 0.91459 0.96742 1.21389 0.74823 0.99822 1.01540 1.45687 1.08884 1.06270 1.78899 1.15899 0.80823 0.84825 0.77846 1.90898 1.67203 1.30867 1.57896 1.47199 1.04457 1.06584 1.78910 1.21652 0.94336 0.86268 0.99182 1.21926 0.97447 0.98047 0.99765 1.21525 0.97429 0.92682 1.02886 1.19904 0.93508 0.87519 1.02276 0.87825 1.24000 0.96315 0.96150 0.87339 1.78022 1.14770 0.97460 1.23149 1.47916 1.39173 1.18085 1.15008 0.71730 1.23222 0.93013 0.95662 0.84310 1.20442 1.01109 0.88244 1.00932 1.23152 0.89978 1.02981 1.04156 1.23160 1.01510 0.95794 0.99687 1.70344 1.20233 1.03152 1.31942 1.21206 0.92939 0.87071 0.96910 0.92593 0.96045 0.96501 0.92221 0.92028 0.77377 0.91203 0.89971 0.90138 0.90907 0.90908 0.91469 0.83832 0.88514 0.86880 0.86816 0.88415 0.88562 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 10 C 0.15 3.13 5.62 -4.04 -0.02 3.11 16 11 N -0.74 -13.06 5.46 -65.23 -0.36 -13.41 16 12 C 0.70 12.73 8.30 -86.93 -0.72 12.01 16 13 O -0.59 -13.09 15.77 5.29 0.08 -13.00 16 14 N -0.63 -8.70 2.98 -178.76 -0.53 -9.24 16 15 C 0.11 1.09 6.39 -3.71 -0.02 1.07 16 16 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 17 C -0.11 -0.96 5.15 -26.69 -0.14 -1.10 16 18 C -0.01 -0.11 2.79 -91.88 -0.26 -0.37 16 19 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.25 2.96 6.66 -156.85 -1.04 1.91 16 21 N -0.31 -3.44 12.80 32.42 0.41 -3.03 16 22 N -0.48 -3.98 7.39 32.62 0.24 -3.74 16 23 H 0.44 2.05 8.96 -182.33 -1.63 0.42 16 24 C 0.32 2.86 7.67 -155.70 -1.19 1.67 16 25 C -0.09 -0.46 6.33 -91.77 -0.58 -1.05 16 26 C -0.16 -0.45 10.21 -26.73 -0.27 -0.72 16 27 C -0.16 -0.50 10.22 -26.73 -0.27 -0.77 16 28 N -0.53 -6.50 11.19 -8.16 -0.09 -6.59 16 29 C 0.14 1.87 5.68 -3.93 -0.02 1.85 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 32 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.39 5.75 5.96 -40.82 -0.24 5.51 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.78 5.64 -51.93 -0.29 0.49 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.10 1.50 6.99 -51.93 -0.36 1.14 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -36.48 390.75 -12.31 -48.79 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.81 Total: 2.15 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -5.26 Total: 2.47 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.45 Total: -62.81 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.48 -12.31 -48.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273240405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.540 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds