Wall clock time and date at job start Tue Mar 31 2020 18:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00116 * 2 1 4 4 H 1.48494 * 109.47180 * 270.00303 * 3 2 1 5 5 H 1.48496 * 109.46544 * 30.00560 * 3 2 1 6 6 H 1.48498 * 109.46721 * 150.00105 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99644 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00403 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47268 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34768 * 120.00353 * 179.72045 * 11 10 9 13 13 O 1.21588 * 119.99750 * 355.29611 * 12 11 10 14 14 N 1.34776 * 120.00360 * 175.29509 * 12 11 10 15 15 C 1.46928 * 120.62874 * 5.23095 * 14 12 11 16 16 C 1.53187 * 108.77730 * 126.36878 * 15 14 12 17 17 C 1.53039 * 109.31301 * 54.63266 * 16 15 14 18 18 C 1.53032 * 109.54002 * 298.63530 * 17 16 15 19 19 H 1.08999 * 109.49758 * 301.41351 * 18 17 16 20 20 C 1.50703 * 109.50036 * 181.34867 * 18 17 16 21 21 N 1.30712 * 125.52371 * 300.02852 * 20 18 17 22 22 N 1.40451 * 106.79031 * 179.97438 * 21 20 18 23 23 H 0.96995 * 126.81961 * 180.02562 * 22 21 20 24 24 C 1.34425 * 106.35301 * 359.97438 * 22 21 20 25 25 C 1.50697 * 125.96048 * 180.02562 * 24 22 21 26 26 C 1.53005 * 117.49995 * 33.59264 * 25 24 22 27 27 C 1.52998 * 59.99919 * 252.51290 * 26 25 24 28 28 N 1.30832 * 108.07933 * 359.75257 * 24 22 21 29 29 C 1.46926 * 120.63194 * 184.94721 * 14 12 11 30 30 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46986 * 59.98878 * 9 7 2 32 32 H 1.09005 * 109.46457 * 299.99559 * 9 7 2 33 33 H 1.09003 * 109.47158 * 59.99654 * 10 9 7 34 34 H 1.09005 * 109.47313 * 299.99392 * 10 9 7 35 35 H 0.97009 * 119.99701 * 0.02562 * 11 10 9 36 36 H 1.09006 * 109.58636 * 246.15958 * 15 14 12 37 37 H 1.08999 * 109.58431 * 6.43391 * 15 14 12 38 38 H 1.09004 * 109.50017 * 174.58668 * 16 15 14 39 39 H 1.09001 * 109.49759 * 294.68378 * 16 15 14 40 40 H 1.09004 * 109.45892 * 58.65803 * 17 16 15 41 41 H 1.09001 * 109.45919 * 178.62362 * 17 16 15 42 42 H 1.08999 * 115.54995 * 179.30097 * 25 24 22 43 43 H 1.08999 * 117.49378 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49485 * 145.02044 * 26 25 24 45 45 H 1.09000 * 117.49418 * 252.50811 * 27 26 25 46 46 H 1.08997 * 117.49568 * 107.49222 * 27 26 25 47 47 H 1.09000 * 109.58564 * 353.42033 * 29 14 12 48 48 H 1.09004 * 109.58305 * 113.84694 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.1604 -3.8037 0.0055 13 8 5.5555 -4.8545 0.0969 14 7 7.5047 -3.8062 -0.0903 15 6 8.2578 -2.5446 -0.0863 16 6 9.3293 -2.6133 1.0063 17 6 10.1915 -3.8594 0.7919 18 6 9.3168 -5.1109 0.8938 19 1 8.8371 -5.1408 1.8721 20 6 10.1724 -6.3386 0.7155 21 7 10.8859 -6.6199 -0.3429 22 7 11.5219 -7.8462 -0.0894 23 1 12.1220 -8.3236 -0.6834 24 6 11.1345 -8.2263 1.1405 25 6 11.5586 -9.4850 1.8523 26 6 12.9758 -10.0001 1.5928 27 6 11.7731 -10.7391 1.0025 28 7 10.3296 -7.3100 1.6139 29 6 8.2455 -5.0708 -0.1944 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6807 0.8904 32 1 3.8751 -0.6797 -0.8896 33 1 3.6584 -3.1502 -0.8903 34 1 3.6579 -3.1506 0.8897 35 1 5.9715 -1.7965 0.0003 36 1 8.7337 -2.4000 -1.0563 37 1 7.5800 -1.7151 0.1152 38 1 9.9570 -1.7236 0.9568 39 1 8.8494 -2.6667 1.9835 40 1 10.6515 -3.8172 -0.1954 41 1 10.9701 -3.8977 1.5538 42 1 11.1493 -9.6195 2.8536 43 1 13.6014 -9.4282 0.9075 44 1 13.4991 -10.4734 2.4236 45 1 11.5054 -11.6986 1.4449 46 1 11.6076 -10.6537 -0.0714 47 1 7.5600 -5.9078 -0.0616 48 1 8.7204 -5.1364 -1.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273240405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:41 Heat of formation + Delta-G solvation = 52.831436 kcal Electronic energy + Delta-G solvation = -27905.215277 eV Core-core repulsion = 23996.489810 eV Total energy + Delta-G solvation = -3908.725467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.37771 -41.48038 -38.96409 -38.11878 -36.67088 -35.10033 -34.49332 -33.41709 -32.75040 -31.93973 -30.80205 -27.29541 -25.97973 -25.62009 -24.89584 -23.36051 -22.80361 -22.60022 -21.61738 -21.17439 -20.40791 -19.22543 -18.95671 -18.88852 -17.31311 -16.97756 -16.84062 -16.59836 -16.25188 -15.89056 -15.55010 -15.41782 -15.36092 -15.27996 -14.85856 -14.67236 -14.44235 -14.07729 -13.92654 -13.57246 -13.28184 -13.02838 -12.87506 -12.53738 -12.48554 -12.22233 -12.17634 -12.14418 -11.98248 -11.93780 -11.77900 -11.73674 -11.55547 -11.48288 -11.21769 -11.17122 -11.12290 -10.76868 -10.35876 -10.21001 -9.52862 -8.27874 -6.35337 0.41221 1.40824 1.43990 1.45919 1.55308 1.56912 1.72180 2.09153 2.39134 2.69531 2.89788 2.97131 3.07056 3.36662 3.56824 3.69685 3.75442 3.90274 3.92875 4.00990 4.10534 4.21035 4.25158 4.34686 4.45603 4.49045 4.57539 4.68863 4.71008 4.76159 4.77327 4.88573 4.95130 4.99784 5.02804 5.06747 5.13047 5.13431 5.16669 5.23274 5.37239 5.42844 5.44370 5.50442 5.67454 5.88981 6.06218 6.24933 6.71478 6.97200 6.99019 7.28928 7.53030 8.88949 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.001933 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.969825 B =14483.085964 C =15124.005147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.010 4.010 10 C 0.163 3.837 11 N -0.729 5.729 12 C 0.700 3.300 13 O -0.640 6.640 14 N -0.623 5.623 15 C 0.100 3.900 16 C -0.126 4.126 17 C -0.098 4.098 18 C -0.003 4.003 19 H 0.086 0.914 20 C 0.232 3.768 21 N -0.322 5.322 22 N -0.473 5.473 23 H 0.453 0.547 24 C 0.322 3.678 25 C -0.114 4.114 26 C -0.145 4.145 27 C -0.153 4.153 28 N -0.572 5.572 29 C 0.149 3.851 30 H 0.268 0.732 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.409 0.591 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.607 -14.304 1.493 39.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.402 3.598 13 O -0.522 6.522 14 N -0.360 5.360 15 C -0.021 4.021 16 C -0.164 4.164 17 C -0.137 4.137 18 C -0.025 4.025 19 H 0.104 0.896 20 C -0.051 4.051 21 N -0.151 5.151 22 N -0.192 5.192 23 H 0.301 0.699 24 C 0.044 3.956 25 C -0.135 4.135 26 C -0.183 4.183 27 C -0.191 4.191 28 N -0.301 5.301 29 C 0.025 3.975 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 35.852 -14.431 1.227 38.667 hybrid contribution -0.212 0.238 -0.241 0.399 sum 35.640 -14.193 0.986 38.375 Atomic orbital electron populations 1.70077 1.08619 1.28420 1.51960 1.26096 0.95707 1.03915 0.93621 0.85522 0.79726 0.77167 0.79364 1.18919 1.21288 1.15786 1.21245 0.91561 0.93389 1.51628 0.95431 1.19633 0.94374 0.92638 0.98143 1.20907 0.77080 0.98449 0.99709 1.45280 1.07269 1.07179 1.78958 1.16056 0.82151 0.83993 0.77626 1.90868 1.68769 1.32594 1.59990 1.47220 1.03042 1.08455 1.77324 1.22038 0.94657 0.84285 1.01167 1.21914 0.97054 0.98880 0.98543 1.21490 0.97135 0.91569 1.03475 1.19789 0.93320 0.88995 1.00397 0.89559 1.24059 0.96825 0.96474 0.87740 1.77907 1.15210 0.98873 1.23089 1.47811 1.38960 1.17318 1.15145 0.69862 1.23789 0.91630 0.95867 0.84276 1.20606 1.03859 0.87865 1.01139 1.23287 0.88825 1.01725 1.04434 1.23286 1.01106 0.95096 0.99611 1.70313 1.22178 1.04333 1.33254 1.21142 0.92507 0.85726 0.98167 0.92347 0.94398 0.94446 0.94096 0.94205 0.75223 0.88939 0.89040 0.86927 0.91740 0.90232 0.90829 0.84078 0.87744 0.85267 0.85514 0.88075 0.91956 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.96 42.46 27.47 68.60 1.88 44.34 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.23 -9.16 6.54 99.48 0.65 -8.51 16 7 C -0.54 -31.38 9.66 25.60 0.25 -31.13 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.46 4.16 29.85 0.12 -0.33 16 10 C 0.16 7.04 5.62 86.38 0.49 7.53 16 11 N -0.73 -25.01 5.46 -478.54 -2.62 -27.63 16 12 C 0.70 25.46 8.30 179.06 1.49 26.95 16 13 O -0.64 -29.68 15.77 -3.99 -0.06 -29.74 16 14 N -0.62 -16.68 2.98 -837.74 -2.50 -19.17 16 15 C 0.10 1.70 6.39 86.36 0.55 2.26 16 16 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 17 C -0.10 -1.58 5.15 30.62 0.16 -1.42 16 18 C 0.00 -0.06 2.79 -11.61 -0.03 -0.09 16 19 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.23 5.65 6.66 138.63 0.92 6.57 16 21 N -0.32 -7.06 12.80 -51.33 -0.66 -7.72 16 22 N -0.47 -7.36 7.39 -50.71 -0.37 -7.73 16 23 H 0.45 3.55 8.96 -213.10 -1.91 1.64 16 24 C 0.32 5.70 7.67 138.23 1.06 6.76 16 25 C -0.11 -1.11 6.33 -11.54 -0.07 -1.18 16 26 C -0.14 -0.44 10.21 30.60 0.31 -0.13 16 27 C -0.15 -0.63 10.22 30.59 0.31 -0.32 16 28 N -0.57 -14.38 11.19 -179.73 -2.01 -16.39 16 29 C 0.15 3.95 5.68 86.22 0.49 4.44 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 32 H 0.04 1.56 7.57 -2.38 -0.02 1.55 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.41 10.90 5.96 -92.70 -0.55 10.35 16 36 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 1.40 5.64 -2.39 -0.01 1.39 16 38 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.06 2.08 6.99 -2.39 -0.02 2.06 16 48 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -83.98 390.75 -0.87 -84.85 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -1.53 Total: 19.74 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.69 Total: 19.04 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -7.85 Total: -138.23 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -83.98 -0.87 -84.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273240405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.680 kcal (2) G-P(sol) polarization free energy of solvation -83.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds