Wall clock time and date at job start Tue Mar 31 2020 17:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47044 * 2 1 4 4 C 1.46847 * 110.99299 * 45.79217 * 3 2 1 5 5 C 1.53041 * 109.51486 * 185.84807 * 4 3 2 6 6 C 1.53120 * 109.27703 * 300.81824 * 5 4 3 7 7 C 1.53119 * 109.16202 * 57.65829 * 6 5 4 8 8 H 1.08996 * 109.50916 * 62.28058 * 7 6 5 9 9 C 1.52998 * 109.53876 * 182.38775 * 7 6 5 10 10 N 1.46509 * 109.46571 * 294.81468 * 9 7 6 11 11 S 1.65600 * 119.99549 * 164.99846 * 10 9 7 12 12 O 1.42109 * 106.39976 * 178.54576 * 11 10 9 13 13 O 1.42102 * 106.40348 * 311.45945 * 11 10 9 14 14 N 1.65596 * 107.21926 * 65.00657 * 11 10 9 15 15 C 1.46500 * 119.99666 * 269.99484 * 14 11 10 16 16 C 1.46495 * 120.00312 * 89.99385 * 14 11 10 17 17 H 1.09004 * 109.47103 * 0.02562 * 16 14 11 18 18 C 1.52997 * 109.47498 * 239.99876 * 16 14 11 19 19 C 1.50708 * 109.47175 * 119.99942 * 16 14 11 20 20 H 1.08000 * 119.99799 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00079 * 180.02562 * 19 16 14 22 22 N 1.31517 * 119.99998 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 119.99981 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46842 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47088 * 119.99942 * 23 21 19 26 26 H 1.48497 * 109.47048 * 239.99745 * 23 21 19 27 27 C 1.46847 * 110.99862 * 170.00059 * 3 2 1 28 28 H 1.09007 * 109.46711 * 60.00088 * 1 2 3 29 29 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47327 * 300.00297 * 1 2 3 31 31 H 1.09002 * 109.46622 * 239.99909 * 2 1 3 32 32 H 1.08997 * 109.46688 * 119.99845 * 2 1 3 33 33 H 1.09005 * 109.46836 * 65.83946 * 4 3 2 34 34 H 1.08994 * 109.46332 * 305.85962 * 4 3 2 35 35 H 1.08996 * 109.50341 * 180.87808 * 5 4 3 36 36 H 1.09004 * 109.53393 * 60.77542 * 5 4 3 37 37 H 1.08993 * 109.52850 * 297.74913 * 6 5 4 38 38 H 1.09003 * 109.52252 * 177.55881 * 6 5 4 39 39 H 1.08995 * 109.47658 * 54.81047 * 9 7 6 40 40 H 1.08996 * 109.47539 * 174.82153 * 9 7 6 41 41 H 0.96994 * 120.00188 * 345.00739 * 10 9 7 42 42 H 1.09007 * 109.46980 * 90.00079 * 15 14 11 43 43 H 1.08999 * 109.47124 * 209.99606 * 15 14 11 44 44 H 1.08998 * 109.47375 * 330.00106 * 15 14 11 45 45 H 1.08990 * 109.47443 * 300.00646 * 18 16 14 46 46 H 1.09003 * 109.46477 * 60.00020 * 18 16 14 47 47 H 1.09002 * 109.47470 * 179.97438 * 18 16 14 48 48 H 0.97001 * 120.00024 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.46448 * 54.14158 * 27 3 2 50 50 H 1.08994 * 109.45958 * 294.16523 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1996 0.9828 5 6 1.7262 3.6620 0.8539 6 6 3.2352 3.7657 1.0920 7 6 3.9653 2.8706 0.0869 8 1 3.7642 3.2206 -0.9255 9 6 5.4707 2.9216 0.3555 10 7 5.9676 4.2749 0.0947 11 16 7.4618 4.7287 0.6458 12 8 7.6619 6.0657 0.2078 13 8 7.5204 4.3415 2.0118 14 7 8.5801 3.8033 -0.1511 15 6 9.0030 2.5187 0.4121 16 6 9.1466 4.2690 -1.4193 17 1 8.7155 5.2366 -1.6762 18 6 8.8267 3.2585 -2.5226 19 6 10.6411 4.4061 -1.2817 20 1 11.1209 4.1695 -0.3435 21 6 11.3957 4.8336 -2.3535 22 7 10.8114 5.1212 -3.4961 23 14 13.2482 5.0028 -2.1831 24 1 13.6557 4.6203 -0.8074 25 1 13.9190 4.1124 -3.1643 26 1 13.6425 6.4109 -2.4422 27 6 3.4680 1.4311 0.2380 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5179 1.8419 1.9877 34 1 0.2222 2.1203 0.7997 35 1 1.1988 4.2640 1.5938 36 1 1.4898 4.0252 -0.1463 37 1 3.4674 3.4398 2.1058 38 1 3.5548 4.7993 0.9585 39 1 5.6635 2.6579 1.3954 40 1 5.9808 2.2149 -0.2991 41 1 5.4214 4.9050 -0.4007 42 1 8.3521 1.7271 0.0405 43 1 10.0313 2.3127 0.1153 44 1 8.9400 2.5603 1.4995 45 1 9.2580 2.2911 -2.2655 46 1 7.7457 3.1594 -2.6221 47 1 9.2478 3.6052 -3.4663 48 1 11.3424 5.4216 -4.2503 49 1 3.9756 0.7936 -0.4859 50 1 3.6817 1.0770 1.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330396491.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:32 Heat of formation + Delta-G solvation = -82.740980 kcal Electronic energy + Delta-G solvation = -28411.834680 eV Core-core repulsion = 24600.381552 eV Total energy + Delta-G solvation = -3811.453128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.61810 -36.68402 -36.21233 -36.02988 -35.19431 -33.57691 -32.56063 -31.31628 -29.84173 -29.08251 -25.87977 -25.47249 -25.15836 -24.29441 -22.86064 -20.95795 -20.73694 -19.97823 -18.67211 -17.26626 -16.85989 -16.61847 -16.17521 -15.73454 -15.34476 -15.21479 -14.88034 -14.61608 -14.33351 -14.14149 -13.58981 -13.43713 -13.27938 -13.18952 -12.82654 -12.60670 -12.47412 -12.16916 -11.99339 -11.90614 -11.80176 -11.58862 -11.47027 -11.32854 -11.28301 -11.21901 -11.18721 -10.90944 -10.82117 -10.78172 -10.53558 -10.44660 -10.39716 -10.20633 -10.04771 -9.27686 -9.20652 -8.55580 -8.44689 -7.95557 -6.06507 -4.12877 1.25625 3.28208 3.36431 3.40155 3.47674 3.66828 4.14220 4.40949 4.52685 4.54361 4.67125 4.81509 4.84095 4.93598 5.07641 5.11572 5.13402 5.20772 5.25370 5.33832 5.39165 5.44351 5.50082 5.53406 5.63560 5.68035 5.72384 5.75026 5.82737 5.87457 5.89821 6.00189 6.11922 6.14561 6.29188 6.38478 6.68058 6.80656 6.83311 6.84631 6.86025 7.05659 7.19821 7.51679 7.64871 7.80972 8.06596 8.28962 8.89440 9.52775 10.99239 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.002822 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.468465 B = 9918.244803 C =10439.135199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.048 3.952 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.089 4.089 8 H 0.088 0.912 9 C 0.128 3.872 10 N -1.131 6.131 11 S 2.780 3.220 12 O -0.975 6.975 13 O -0.998 6.998 14 N -0.989 5.989 15 C 0.096 3.904 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.146 4.146 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.062 3.938 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.010 0.990 47 H 0.091 0.909 48 H 0.262 0.738 49 H 0.079 0.921 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.319 -9.630 6.446 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.079 4.079 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.109 4.109 8 H 0.106 0.894 9 C 0.000 4.000 10 N -0.890 5.890 11 S 2.789 3.211 12 O -0.959 6.959 13 O -0.982 6.982 14 N -0.831 5.831 15 C -0.051 4.051 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.067 4.067 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.244 0.756 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.029 0.971 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.074 -8.843 6.584 22.032 hybrid contribution 0.898 -0.353 0.217 0.989 sum -18.176 -9.196 6.801 21.476 Atomic orbital electron populations 1.21947 0.95100 1.01851 1.02488 1.22078 0.95670 0.89109 1.00875 1.61967 1.03872 1.10453 1.50001 1.22233 0.98835 0.93712 0.93145 1.21605 0.96059 0.95440 1.02444 1.21659 0.94647 1.00338 0.98974 1.21361 0.93340 0.95135 1.01075 0.89409 1.21155 0.94237 0.83477 1.01101 1.56160 1.37283 1.21478 1.74079 1.01879 0.72496 0.73384 0.73335 1.93615 1.84795 1.34857 1.82675 1.93518 1.86725 1.84343 1.33600 1.57640 1.55537 1.32646 1.37309 1.21315 1.02088 0.84380 0.97294 1.18723 0.94013 0.93660 0.77092 0.92384 1.22098 0.96366 0.98959 1.03123 1.21380 0.91396 1.45091 0.98045 0.91881 1.24910 0.98828 0.95017 0.95171 1.69873 1.35488 1.45309 1.02180 0.86448 0.85084 0.77794 0.78115 1.19748 1.21011 1.20910 1.22056 0.87806 0.96745 1.00060 0.91719 0.92234 0.92386 0.90552 0.94983 0.95088 0.90205 0.91572 0.91028 0.91958 0.91252 0.90854 0.91684 0.75556 0.94570 0.89864 0.91973 0.94901 0.97057 0.89008 0.92770 0.90281 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.16 37.16 0.34 -0.65 16 2 C 0.05 0.38 5.99 -3.82 -0.02 0.36 16 3 N -0.54 -4.85 4.81 -234.66 -1.13 -5.98 16 4 C 0.05 0.40 4.85 -3.83 -0.02 0.38 16 5 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 6 C -0.12 -1.17 5.14 -26.61 -0.14 -1.30 16 7 C -0.09 -0.90 2.37 -90.54 -0.21 -1.12 16 8 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.13 1.54 5.64 -4.04 -0.02 1.51 16 10 N -1.13 -16.31 5.63 -10.61 -0.06 -16.37 16 11 S 2.78 53.85 6.14 -107.50 -0.66 53.19 16 12 O -0.98 -22.70 16.70 -57.17 -0.95 -23.66 16 13 O -1.00 -20.47 16.21 -57.17 -0.93 -21.40 16 14 N -0.99 -20.26 3.12 -115.85 -0.36 -20.63 16 15 C 0.10 1.68 9.65 59.85 0.58 2.25 16 16 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 17 H 0.06 1.57 6.91 -51.93 -0.36 1.22 16 18 C -0.15 -3.29 8.97 37.16 0.33 -2.96 16 19 C -0.52 -13.95 7.99 -34.44 -0.28 -14.23 16 20 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 23 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.06 0.58 4.71 -3.83 -0.02 0.56 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 6.21 -51.93 -0.32 0.03 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.58 5.81 -51.93 -0.30 0.28 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.71 7.63 -51.93 -0.40 0.31 16 39 H 0.07 0.90 7.75 -51.93 -0.40 0.49 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.41 5.29 8.40 -34.47 -0.29 5.00 16 42 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 44 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 45 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 46 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 48 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 50 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -31.84 393.32 -11.40 -43.24 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.95 Total: 2.09 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 0.10 Total: -8.38 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.92 Total: -67.13 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.88 Total: -45.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.66 Total: 53.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.84 -11.40 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330396491.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.498 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds