Wall clock time and date at job start Tue Mar 31 2020 17:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47044 * 2 1 4 4 C 1.46847 * 110.99299 * 45.79217 * 3 2 1 5 5 C 1.53041 * 109.51486 * 185.84807 * 4 3 2 6 6 C 1.53120 * 109.27703 * 300.81824 * 5 4 3 7 7 C 1.53119 * 109.16202 * 57.65829 * 6 5 4 8 8 H 1.08996 * 109.50916 * 62.28058 * 7 6 5 9 9 C 1.52998 * 109.53876 * 182.38775 * 7 6 5 10 10 N 1.46509 * 109.46571 * 294.81468 * 9 7 6 11 11 S 1.65600 * 119.99549 * 164.99846 * 10 9 7 12 12 O 1.42109 * 106.39976 * 178.54576 * 11 10 9 13 13 O 1.42102 * 106.40348 * 311.45945 * 11 10 9 14 14 N 1.65596 * 107.21926 * 65.00657 * 11 10 9 15 15 C 1.46500 * 119.99666 * 269.99484 * 14 11 10 16 16 C 1.46495 * 120.00312 * 89.99385 * 14 11 10 17 17 H 1.09004 * 109.47103 * 0.02562 * 16 14 11 18 18 C 1.52997 * 109.47498 * 239.99876 * 16 14 11 19 19 C 1.50708 * 109.47175 * 119.99942 * 16 14 11 20 20 H 1.08000 * 119.99799 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00079 * 180.02562 * 19 16 14 22 22 N 1.31517 * 119.99998 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 119.99981 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46842 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47088 * 119.99942 * 23 21 19 26 26 H 1.48497 * 109.47048 * 239.99745 * 23 21 19 27 27 C 1.46847 * 110.99862 * 170.00059 * 3 2 1 28 28 H 1.09007 * 109.46711 * 60.00088 * 1 2 3 29 29 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47327 * 300.00297 * 1 2 3 31 31 H 1.09002 * 109.46622 * 239.99909 * 2 1 3 32 32 H 1.08997 * 109.46688 * 119.99845 * 2 1 3 33 33 H 1.09005 * 109.46836 * 65.83946 * 4 3 2 34 34 H 1.08994 * 109.46332 * 305.85962 * 4 3 2 35 35 H 1.08996 * 109.50341 * 180.87808 * 5 4 3 36 36 H 1.09004 * 109.53393 * 60.77542 * 5 4 3 37 37 H 1.08993 * 109.52850 * 297.74913 * 6 5 4 38 38 H 1.09003 * 109.52252 * 177.55881 * 6 5 4 39 39 H 1.08995 * 109.47658 * 54.81047 * 9 7 6 40 40 H 1.08996 * 109.47539 * 174.82153 * 9 7 6 41 41 H 0.96994 * 120.00188 * 345.00739 * 10 9 7 42 42 H 1.09007 * 109.46980 * 90.00079 * 15 14 11 43 43 H 1.08999 * 109.47124 * 209.99606 * 15 14 11 44 44 H 1.08998 * 109.47375 * 330.00106 * 15 14 11 45 45 H 1.08990 * 109.47443 * 300.00646 * 18 16 14 46 46 H 1.09003 * 109.46477 * 60.00020 * 18 16 14 47 47 H 1.09002 * 109.47470 * 179.97438 * 18 16 14 48 48 H 0.97001 * 120.00024 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.46448 * 54.14158 * 27 3 2 50 50 H 1.08994 * 109.45958 * 294.16523 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1996 0.9828 5 6 1.7262 3.6620 0.8539 6 6 3.2352 3.7657 1.0920 7 6 3.9653 2.8706 0.0869 8 1 3.7642 3.2206 -0.9255 9 6 5.4707 2.9216 0.3555 10 7 5.9676 4.2749 0.0947 11 16 7.4618 4.7287 0.6458 12 8 7.6619 6.0657 0.2078 13 8 7.5204 4.3415 2.0118 14 7 8.5801 3.8033 -0.1511 15 6 9.0030 2.5187 0.4121 16 6 9.1466 4.2690 -1.4193 17 1 8.7155 5.2366 -1.6762 18 6 8.8267 3.2585 -2.5226 19 6 10.6411 4.4061 -1.2817 20 1 11.1209 4.1695 -0.3435 21 6 11.3957 4.8336 -2.3535 22 7 10.8114 5.1212 -3.4961 23 14 13.2482 5.0028 -2.1831 24 1 13.6557 4.6203 -0.8074 25 1 13.9190 4.1124 -3.1643 26 1 13.6425 6.4109 -2.4422 27 6 3.4680 1.4311 0.2380 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5179 1.8419 1.9877 34 1 0.2222 2.1203 0.7997 35 1 1.1988 4.2640 1.5938 36 1 1.4898 4.0252 -0.1463 37 1 3.4674 3.4398 2.1058 38 1 3.5548 4.7993 0.9585 39 1 5.6635 2.6579 1.3954 40 1 5.9808 2.2149 -0.2991 41 1 5.4214 4.9050 -0.4007 42 1 8.3521 1.7271 0.0405 43 1 10.0313 2.3127 0.1153 44 1 8.9400 2.5603 1.4995 45 1 9.2580 2.2911 -2.2655 46 1 7.7457 3.1594 -2.6221 47 1 9.2478 3.6052 -3.4663 48 1 11.3424 5.4216 -4.2503 49 1 3.9756 0.7936 -0.4859 50 1 3.6817 1.0770 1.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330396491.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:31 Heat of formation + Delta-G solvation = -105.794249 kcal Electronic energy + Delta-G solvation = -28412.834344 eV Core-core repulsion = 24600.381552 eV Total energy + Delta-G solvation = -3812.452793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.34279 -38.31621 -37.87462 -37.05299 -36.86727 -34.52269 -34.40382 -32.09943 -30.89996 -30.52083 -27.22578 -27.00326 -26.67049 -25.04370 -23.57656 -22.59893 -21.62780 -20.78972 -20.11320 -18.78430 -18.57736 -18.12872 -17.36879 -17.02048 -16.64646 -16.14397 -15.89751 -15.68341 -15.42572 -15.14025 -15.01235 -14.78946 -14.39200 -14.23021 -14.04095 -13.77577 -13.65981 -13.44651 -13.29454 -13.14700 -13.11661 -13.01790 -12.98904 -12.71186 -12.59980 -12.50716 -12.42395 -12.21400 -12.11918 -12.01944 -11.97430 -11.89181 -11.54904 -11.26138 -11.18794 -11.12755 -10.50723 -10.39585 -9.63598 -9.21508 -8.11106 -6.24278 -0.28746 1.41419 1.44500 1.54773 2.06863 2.43814 2.65345 2.95262 3.17372 3.47936 3.74176 3.83751 3.91252 4.12167 4.19018 4.21405 4.31479 4.38282 4.48466 4.55307 4.56320 4.63776 4.65247 4.76738 4.77666 4.79924 4.88449 4.90070 4.92640 5.03592 5.06822 5.09052 5.13385 5.16677 5.18526 5.22509 5.28905 5.30157 5.38038 5.50774 5.62735 5.71308 5.89299 6.07704 6.17630 6.20638 6.23249 6.31780 6.83747 7.44502 8.93269 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.002822 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.468465 B = 9918.244803 C =10439.135199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 N -0.548 5.548 4 C 0.049 3.951 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.081 4.081 8 H 0.085 0.915 9 C 0.122 3.878 10 N -1.116 6.116 11 S 2.797 3.203 12 O -1.020 7.020 13 O -1.010 7.010 14 N -0.996 5.996 15 C 0.091 3.909 16 C 0.273 3.727 17 H 0.024 0.976 18 C -0.133 4.133 19 C -0.537 4.537 20 H 0.057 0.943 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.955 3.045 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.285 1.285 27 C 0.064 3.936 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.420 0.580 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.264 0.736 49 H 0.083 0.917 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 -11.185 6.865 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 N -0.273 5.273 4 C -0.079 4.079 5 C -0.152 4.152 6 C -0.159 4.159 7 C -0.101 4.101 8 H 0.103 0.897 9 C -0.004 4.004 10 N -0.879 5.879 11 S 2.806 3.194 12 O -1.004 7.004 13 O -0.993 6.993 14 N -0.838 5.838 15 C -0.055 4.055 16 C 0.169 3.831 17 H 0.042 0.958 18 C -0.192 4.192 19 C -0.577 4.577 20 H 0.075 0.925 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.781 3.219 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.211 1.211 27 C -0.065 4.065 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.256 0.744 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.085 -10.416 7.017 23.689 hybrid contribution 1.123 0.105 0.133 1.135 sum -18.963 -10.311 7.149 22.738 Atomic orbital electron populations 1.21913 0.94116 1.02581 1.02356 1.22133 0.96507 0.88332 1.00937 1.61977 1.03643 1.11370 1.50327 1.22256 0.99392 0.93279 0.92932 1.21583 0.95086 0.95967 1.02571 1.21683 0.95711 0.99844 0.98673 1.21277 0.91888 0.96022 1.00939 0.89674 1.21398 0.95638 0.81903 1.01490 1.55716 1.35385 1.22918 1.73886 1.01135 0.73092 0.72217 0.72907 1.93551 1.85837 1.37758 1.83226 1.93498 1.87253 1.84285 1.34290 1.57514 1.56418 1.33722 1.36133 1.21503 1.02189 0.83900 0.97892 1.18384 0.92685 0.92851 0.79170 0.95834 1.21888 0.97858 0.98555 1.00930 1.21697 0.93049 1.45094 0.97828 0.92473 1.25635 1.02765 0.94882 0.95017 1.69986 1.36823 1.45822 1.02677 0.85555 0.80491 0.77592 0.78266 1.19425 1.19988 1.21102 1.22015 0.88298 0.95899 1.00286 0.92195 0.91135 0.92099 0.90511 0.94876 0.95211 0.89142 0.90485 0.91393 0.92299 0.91902 0.90731 0.90664 0.74442 0.91209 0.91089 0.91051 0.93918 0.94576 0.91701 0.92674 0.89836 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.16 71.98 0.66 -0.95 16 2 C 0.05 0.64 5.99 86.30 0.52 1.16 16 3 N -0.55 -8.82 4.81 -896.34 -4.31 -13.13 16 4 C 0.05 0.71 4.85 86.33 0.42 1.13 16 5 C -0.11 -1.75 6.09 30.65 0.19 -1.56 16 6 C -0.12 -2.22 5.14 30.67 0.16 -2.06 16 7 C -0.08 -1.50 2.37 -10.74 -0.03 -1.53 16 8 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 9 C 0.12 2.71 5.64 86.38 0.49 3.19 16 10 N -1.12 -31.02 5.63 -187.48 -1.05 -32.07 16 11 S 2.80 107.56 6.14 -56.49 -0.35 107.21 16 12 O -1.02 -48.41 16.70 -128.00 -2.14 -50.55 16 13 O -1.01 -40.60 16.21 -128.00 -2.08 -42.68 16 14 N -1.00 -40.25 3.12 -520.44 -1.62 -41.87 16 15 C 0.09 3.03 9.65 127.77 1.23 4.26 16 16 C 0.27 13.38 2.62 44.25 0.12 13.50 16 17 H 0.02 1.32 6.91 -2.39 -0.02 1.31 16 18 C -0.13 -5.89 8.97 71.98 0.65 -5.25 16 19 C -0.54 -29.07 7.99 25.60 0.20 -28.86 16 20 H 0.06 3.08 7.33 -2.91 -0.02 3.06 16 21 C 0.02 0.91 5.30 84.65 0.45 1.36 16 22 N -0.91 -51.43 11.32 21.45 0.24 -51.19 16 23 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 C 0.06 1.06 4.71 86.33 0.41 1.47 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.61 6.21 -2.39 -0.01 0.59 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 0.44 8.08 -2.39 -0.02 0.42 16 33 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.09 1.13 5.81 -2.39 -0.01 1.11 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.22 7.63 -2.39 -0.02 1.20 16 39 H 0.07 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.42 10.47 8.40 -96.75 -0.81 9.66 16 42 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.07 2.55 7.02 -2.39 -0.02 2.53 16 44 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 45 H 0.04 1.76 7.67 -2.39 -0.02 1.74 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 48 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 50 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -67.94 393.32 -3.72 -71.66 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.10 Total: 21.33 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.46 Total: -14.14 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -6.74 Total: -138.26 kcal Atomic # 8 Polarization: -89.02 SS G_CDS: -4.21 Total: -93.23 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 107.56 SS G_CDS: -0.35 Total: 107.21 kcal Total: -67.94 -3.72 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330396491.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.133 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds