Wall clock time and date at job start Tue Mar 31 2020 17:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.46948 * 2 1 4 4 C 1.46853 * 111.00147 * 294.20912 * 3 2 1 5 5 C 1.53028 * 109.52521 * 174.16666 * 4 3 2 6 6 C 1.53116 * 109.28260 * 59.17854 * 5 4 3 7 7 C 1.53124 * 109.15677 * 302.34470 * 6 5 4 8 8 H 1.08991 * 109.53997 * 297.69145 * 7 6 5 9 9 C 1.53002 * 109.49860 * 177.59412 * 7 6 5 10 10 N 1.46501 * 109.47163 * 65.19857 * 9 7 6 11 11 S 1.65608 * 120.00079 * 164.99607 * 10 9 7 12 12 O 1.42099 * 106.40241 * 178.54028 * 11 10 9 13 13 O 1.42097 * 106.39895 * 311.46103 * 11 10 9 14 14 N 1.65596 * 107.21450 * 65.00239 * 11 10 9 15 15 C 1.46506 * 120.00320 * 90.00284 * 14 11 10 16 16 C 1.46501 * 120.00140 * 270.00029 * 14 11 10 17 17 H 1.08999 * 109.47070 * 0.02562 * 16 14 11 18 18 C 1.52994 * 109.47500 * 120.00084 * 16 14 11 19 19 C 1.50699 * 109.47382 * 240.00492 * 16 14 11 20 20 H 1.08002 * 119.99847 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00417 * 180.02562 * 19 16 14 22 22 N 1.31509 * 119.99894 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99897 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47270 * 60.00087 * 23 21 19 25 25 H 1.48502 * 109.46780 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47149 * 299.99565 * 23 21 19 27 27 C 1.46854 * 111.00061 * 170.00359 * 3 2 1 28 28 H 1.09000 * 109.47399 * 60.00360 * 1 2 3 29 29 H 1.09005 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47216 * 300.00204 * 1 2 3 31 31 H 1.08999 * 109.46693 * 239.99808 * 2 1 3 32 32 H 1.09003 * 109.46854 * 120.00156 * 2 1 3 33 33 H 1.09006 * 109.46259 * 294.18151 * 4 3 2 34 34 H 1.08993 * 109.45983 * 54.14104 * 4 3 2 35 35 H 1.09006 * 109.50396 * 179.12279 * 5 4 3 36 36 H 1.09008 * 109.50185 * 299.19729 * 5 4 3 37 37 H 1.09003 * 109.52346 * 182.44078 * 6 5 4 38 38 H 1.09000 * 109.52202 * 62.25175 * 6 5 4 39 39 H 1.09002 * 109.47445 * 305.20139 * 9 7 6 40 40 H 1.09001 * 109.46949 * 185.19725 * 9 7 6 41 41 H 0.97002 * 120.00027 * 345.00118 * 10 9 7 42 42 H 1.09001 * 109.47207 * 89.99619 * 15 14 11 43 43 H 1.08995 * 109.46853 * 209.99686 * 15 14 11 44 44 H 1.08996 * 109.46456 * 329.99823 * 15 14 11 45 45 H 1.09005 * 109.47232 * 60.00235 * 18 16 14 46 46 H 1.09006 * 109.47608 * 180.02562 * 18 16 14 47 47 H 1.08997 * 109.46971 * 300.00429 * 18 16 14 48 48 H 0.97000 * 120.00314 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.46251 * 65.81915 * 27 3 2 50 50 H 1.09004 * 109.44772 * 305.84528 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6650 2.0685 -1.2504 5 6 2.0607 3.5438 -1.1568 6 6 3.5675 3.6482 -0.9059 7 6 3.9174 2.8874 0.3761 8 1 3.4079 3.3467 1.2231 9 6 5.4298 2.9360 0.6022 10 7 5.8419 4.3193 0.8530 11 16 7.3367 4.6350 1.4921 12 8 7.4447 6.0491 1.5806 13 8 7.4847 3.7726 2.6117 14 7 8.4595 4.1493 0.3760 15 6 8.9359 5.0901 -0.6411 16 6 8.9765 2.7789 0.4056 17 1 8.5092 2.2319 1.2244 18 6 8.6562 2.0842 -0.9194 19 6 10.4694 2.8095 0.6087 20 1 10.9819 3.7552 0.7056 21 6 11.1812 1.6302 0.6698 22 7 10.5572 0.4786 0.5513 23 14 13.0319 1.6682 0.9209 24 1 13.3432 2.3422 2.2071 25 1 13.5559 0.2791 0.9510 26 1 13.6676 2.4135 -0.1952 27 6 3.4680 1.4311 0.2380 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1942 1.6026 -2.0817 34 1 0.5904 1.9904 -1.4148 35 1 1.8115 4.0474 -2.0909 36 1 1.5209 4.0139 -0.3347 37 1 3.8467 4.6960 -0.7953 38 1 4.1078 3.2131 -1.7467 39 1 5.9419 2.5592 -0.2832 40 1 5.6886 2.3182 1.4621 41 1 5.2392 5.0502 0.6448 42 1 9.8092 5.6219 -0.2635 43 1 9.2061 4.5427 -1.5441 44 1 8.1467 5.8054 -0.8723 45 1 9.1232 2.6310 -1.7386 46 1 9.0405 1.0643 -0.8972 47 1 7.5764 2.0621 -1.0663 48 1 11.0579 -0.3510 0.5946 49 1 3.9887 0.9682 -0.6002 50 1 3.7026 0.8901 1.1548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330396492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:35 Heat of formation + Delta-G solvation = -84.223688 kcal Electronic energy + Delta-G solvation = -28698.062909 eV Core-core repulsion = 24886.545486 eV Total energy + Delta-G solvation = -3811.517423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.50386 -36.69216 -36.18435 -35.96988 -35.17403 -33.52649 -32.57136 -31.18170 -29.89072 -29.10157 -25.73365 -25.58242 -25.13627 -24.21400 -22.71525 -20.97540 -20.77469 -19.84651 -18.72593 -17.28713 -16.85013 -16.37607 -16.18273 -15.86562 -15.31787 -15.05352 -14.68315 -14.43182 -14.36758 -14.08962 -13.61302 -13.50807 -13.26239 -13.11752 -12.80701 -12.76706 -12.28957 -12.17899 -11.95453 -11.90342 -11.71278 -11.49752 -11.38950 -11.34485 -11.25340 -11.21929 -11.15152 -10.94976 -10.80091 -10.75510 -10.46191 -10.45539 -10.34265 -10.27800 -10.00370 -9.26562 -9.17803 -8.49143 -8.44939 -7.96549 -6.07436 -4.13482 1.25291 3.30555 3.34770 3.38299 3.51485 3.72594 4.16410 4.40488 4.59083 4.59459 4.73412 4.88398 4.93475 5.05271 5.14173 5.19228 5.24019 5.24750 5.27392 5.43475 5.45531 5.55991 5.57606 5.62055 5.64634 5.73046 5.75334 5.83805 5.90597 5.94249 5.98576 6.03084 6.16468 6.19796 6.34789 6.41178 6.63341 6.77441 6.79343 6.91810 6.92999 6.99383 7.20760 7.50229 7.63586 7.79098 8.03640 8.27886 8.88437 9.52229 10.98235 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003384 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.274378 B = 8271.322593 C = 9360.431761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.052 3.948 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.088 4.088 8 H 0.086 0.914 9 C 0.123 3.877 10 N -1.132 6.132 11 S 2.780 3.220 12 O -0.998 6.998 13 O -0.975 6.975 14 N -0.991 5.991 15 C 0.112 3.888 16 C 0.268 3.732 17 H 0.059 0.941 18 C -0.150 4.150 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.060 3.940 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.407 0.593 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.033 0.967 46 H 0.093 0.907 47 H 0.011 0.989 48 H 0.263 0.737 49 H 0.039 0.961 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 1.756 -5.880 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.076 4.076 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.108 4.108 8 H 0.104 0.896 9 C -0.004 4.004 10 N -0.891 5.891 11 S 2.789 3.211 12 O -0.983 6.983 13 O -0.958 6.958 14 N -0.834 5.834 15 C -0.035 4.035 16 C 0.165 3.835 17 H 0.077 0.923 18 C -0.209 4.209 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.068 4.068 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.240 0.760 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.111 0.889 47 H 0.030 0.970 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.296 2.017 -4.585 18.969 hybrid contribution 1.145 -0.365 -1.101 1.630 sum -17.151 1.652 -5.686 18.144 Atomic orbital electron populations 1.21805 0.94987 1.01436 1.02368 1.22064 0.95963 0.88828 1.00982 1.61930 1.13995 1.15471 1.34946 1.22147 1.00607 0.94708 0.90125 1.21579 0.96369 0.95590 1.01857 1.21658 0.95797 1.00580 0.97482 1.21351 0.94699 0.95738 0.99046 0.89597 1.21291 0.94739 0.82253 1.02163 1.56160 1.35633 1.13317 1.84037 1.01910 0.72521 0.72582 0.74080 1.93543 1.86428 1.31253 1.87034 1.93594 1.85498 1.68015 1.48679 1.57689 1.55456 1.22373 1.47875 1.21112 0.98578 0.91410 0.92368 1.18716 0.94843 0.74898 0.95049 0.92341 1.22177 0.96143 1.04194 0.98371 1.21301 0.91803 0.92911 1.49923 0.92036 1.24894 0.98683 0.95339 0.94913 1.69836 1.35783 0.97324 1.50006 0.86564 0.85034 0.76981 0.78859 1.20165 1.21233 1.20277 1.22069 0.86966 0.96384 1.01428 0.92794 0.92395 0.91857 0.94943 0.90585 0.94987 0.90714 0.91635 0.91141 0.91572 0.91794 0.91173 0.90203 0.75992 0.93370 0.91087 0.93356 0.94776 0.88869 0.96967 0.92681 0.94244 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.84 37.16 0.37 -0.72 16 2 C 0.05 0.43 5.68 -3.83 -0.02 0.41 16 3 N -0.54 -5.36 4.66 -234.68 -1.09 -6.45 16 4 C 0.05 0.46 5.29 -3.84 -0.02 0.44 16 5 C -0.12 -1.00 6.09 -26.66 -0.16 -1.16 16 6 C -0.12 -1.14 5.13 -26.61 -0.14 -1.28 16 7 C -0.09 -0.98 2.46 -90.54 -0.22 -1.20 16 8 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 9 C 0.12 1.68 5.64 -4.04 -0.02 1.66 16 10 N -1.13 -16.37 5.94 -10.61 -0.06 -16.43 16 11 S 2.78 54.02 6.09 -107.50 -0.66 53.36 16 12 O -1.00 -20.73 17.21 -57.17 -0.98 -21.71 16 13 O -0.97 -22.66 16.17 -57.17 -0.92 -23.58 16 14 N -0.99 -20.26 3.12 -115.85 -0.36 -20.62 16 15 C 0.11 1.98 9.53 59.85 0.57 2.55 16 16 C 0.27 6.39 2.62 -69.09 -0.18 6.21 16 17 H 0.06 1.54 6.91 -51.93 -0.36 1.19 16 18 C -0.15 -3.26 8.95 37.15 0.33 -2.92 16 19 C -0.52 -13.90 8.37 -34.44 -0.29 -14.19 16 20 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 23 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 C 0.06 0.65 4.74 -3.83 -0.02 0.63 16 28 H 0.05 0.38 6.43 -51.93 -0.33 0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 32 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.60 6.21 -51.93 -0.32 0.27 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.61 6.98 -51.93 -0.36 0.25 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 40 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 41 H 0.41 4.86 7.45 -34.48 -0.26 4.60 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 44 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 45 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 46 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 47 H 0.01 0.22 6.18 -51.93 -0.32 -0.10 16 48 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.88 8.02 -51.93 -0.42 0.47 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -31.39 389.42 -11.18 -42.57 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.67 Total: 2.65 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.10 Total: -7.94 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.89 Total: -67.29 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.91 Total: -45.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 54.02 SS G_CDS: -0.66 Total: 53.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.39 -11.18 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330396492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.652 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds