Wall clock time and date at job start Tue Mar 31 2020 17:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.46948 * 2 1 4 4 C 1.46853 * 111.00147 * 294.20912 * 3 2 1 5 5 C 1.53028 * 109.52521 * 174.16666 * 4 3 2 6 6 C 1.53116 * 109.28260 * 59.17854 * 5 4 3 7 7 C 1.53124 * 109.15677 * 302.34470 * 6 5 4 8 8 H 1.08991 * 109.53997 * 297.69145 * 7 6 5 9 9 C 1.53002 * 109.49860 * 177.59412 * 7 6 5 10 10 N 1.46501 * 109.47163 * 65.19857 * 9 7 6 11 11 S 1.65608 * 120.00079 * 164.99607 * 10 9 7 12 12 O 1.42099 * 106.40241 * 178.54028 * 11 10 9 13 13 O 1.42097 * 106.39895 * 311.46103 * 11 10 9 14 14 N 1.65596 * 107.21450 * 65.00239 * 11 10 9 15 15 C 1.46506 * 120.00320 * 90.00284 * 14 11 10 16 16 C 1.46501 * 120.00140 * 270.00029 * 14 11 10 17 17 H 1.08999 * 109.47070 * 0.02562 * 16 14 11 18 18 C 1.52994 * 109.47500 * 120.00084 * 16 14 11 19 19 C 1.50699 * 109.47382 * 240.00492 * 16 14 11 20 20 H 1.08002 * 119.99847 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00417 * 180.02562 * 19 16 14 22 22 N 1.31509 * 119.99894 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99897 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47270 * 60.00087 * 23 21 19 25 25 H 1.48502 * 109.46780 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47149 * 299.99565 * 23 21 19 27 27 C 1.46854 * 111.00061 * 170.00359 * 3 2 1 28 28 H 1.09000 * 109.47399 * 60.00360 * 1 2 3 29 29 H 1.09005 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47216 * 300.00204 * 1 2 3 31 31 H 1.08999 * 109.46693 * 239.99808 * 2 1 3 32 32 H 1.09003 * 109.46854 * 120.00156 * 2 1 3 33 33 H 1.09006 * 109.46259 * 294.18151 * 4 3 2 34 34 H 1.08993 * 109.45983 * 54.14104 * 4 3 2 35 35 H 1.09006 * 109.50396 * 179.12279 * 5 4 3 36 36 H 1.09008 * 109.50185 * 299.19729 * 5 4 3 37 37 H 1.09003 * 109.52346 * 182.44078 * 6 5 4 38 38 H 1.09000 * 109.52202 * 62.25175 * 6 5 4 39 39 H 1.09002 * 109.47445 * 305.20139 * 9 7 6 40 40 H 1.09001 * 109.46949 * 185.19725 * 9 7 6 41 41 H 0.97002 * 120.00027 * 345.00118 * 10 9 7 42 42 H 1.09001 * 109.47207 * 89.99619 * 15 14 11 43 43 H 1.08995 * 109.46853 * 209.99686 * 15 14 11 44 44 H 1.08996 * 109.46456 * 329.99823 * 15 14 11 45 45 H 1.09005 * 109.47232 * 60.00235 * 18 16 14 46 46 H 1.09006 * 109.47608 * 180.02562 * 18 16 14 47 47 H 1.08997 * 109.46971 * 300.00429 * 18 16 14 48 48 H 0.97000 * 120.00314 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.46251 * 65.81915 * 27 3 2 50 50 H 1.09004 * 109.44772 * 305.84528 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6650 2.0685 -1.2504 5 6 2.0607 3.5438 -1.1568 6 6 3.5675 3.6482 -0.9059 7 6 3.9174 2.8874 0.3761 8 1 3.4079 3.3467 1.2231 9 6 5.4298 2.9360 0.6022 10 7 5.8419 4.3193 0.8530 11 16 7.3367 4.6350 1.4921 12 8 7.4447 6.0491 1.5806 13 8 7.4847 3.7726 2.6117 14 7 8.4595 4.1493 0.3760 15 6 8.9359 5.0901 -0.6411 16 6 8.9765 2.7789 0.4056 17 1 8.5092 2.2319 1.2244 18 6 8.6562 2.0842 -0.9194 19 6 10.4694 2.8095 0.6087 20 1 10.9819 3.7552 0.7056 21 6 11.1812 1.6302 0.6698 22 7 10.5572 0.4786 0.5513 23 14 13.0319 1.6682 0.9209 24 1 13.3432 2.3422 2.2071 25 1 13.5559 0.2791 0.9510 26 1 13.6676 2.4135 -0.1952 27 6 3.4680 1.4311 0.2380 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1942 1.6026 -2.0817 34 1 0.5904 1.9904 -1.4148 35 1 1.8115 4.0474 -2.0909 36 1 1.5209 4.0139 -0.3347 37 1 3.8467 4.6960 -0.7953 38 1 4.1078 3.2131 -1.7467 39 1 5.9419 2.5592 -0.2832 40 1 5.6886 2.3182 1.4621 41 1 5.2392 5.0502 0.6448 42 1 9.8092 5.6219 -0.2635 43 1 9.2061 4.5427 -1.5441 44 1 8.1467 5.8054 -0.8723 45 1 9.1232 2.6310 -1.7386 46 1 9.0405 1.0643 -0.8972 47 1 7.5764 2.0621 -1.0663 48 1 11.0579 -0.3510 0.5946 49 1 3.9887 0.9682 -0.6002 50 1 3.7026 0.8901 1.1548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330396492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:35 Heat of formation + Delta-G solvation = -106.935669 kcal Electronic energy + Delta-G solvation = -28699.047774 eV Core-core repulsion = 24886.545486 eV Total energy + Delta-G solvation = -3812.502288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31846 -38.34548 -37.87648 -37.04085 -36.86803 -34.51823 -34.40663 -32.05138 -30.90078 -30.63785 -27.28399 -27.00279 -26.65100 -25.04282 -23.50061 -22.57716 -21.77573 -20.69388 -20.22558 -18.86633 -18.52177 -18.05040 -17.48256 -16.92300 -16.73939 -16.16112 -15.88133 -15.59487 -15.34557 -15.18469 -15.00356 -14.74515 -14.59053 -14.36353 -14.06410 -13.73152 -13.66105 -13.35901 -13.32313 -13.15714 -13.10691 -12.99334 -12.96524 -12.77161 -12.59109 -12.57438 -12.42299 -12.22368 -12.15179 -12.04356 -11.95200 -11.86417 -11.54671 -11.24598 -11.16114 -11.12163 -10.52602 -10.40953 -9.66255 -9.25954 -8.10827 -6.23667 -0.31237 1.42746 1.44876 1.51545 2.06284 2.43795 2.64935 2.92751 3.17483 3.45050 3.74518 3.79932 3.93321 4.08563 4.15301 4.21961 4.31480 4.40865 4.47143 4.48733 4.56730 4.64023 4.65809 4.70510 4.77011 4.83790 4.88434 4.91196 4.93997 5.03564 5.07211 5.08970 5.12701 5.15429 5.16433 5.19688 5.24822 5.30929 5.40525 5.52618 5.62732 5.73050 5.89731 6.11570 6.14651 6.19986 6.22767 6.32979 6.83259 7.44939 8.92857 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003384 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.274378 B = 8271.322593 C = 9360.431761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.545 5.545 4 C 0.050 3.950 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.079 4.079 8 H 0.085 0.915 9 C 0.122 3.878 10 N -1.111 6.111 11 S 2.796 3.204 12 O -1.011 7.011 13 O -1.017 7.017 14 N -0.997 5.997 15 C 0.105 3.895 16 C 0.274 3.726 17 H 0.027 0.973 18 C -0.137 4.137 19 C -0.541 4.541 20 H 0.054 0.946 21 C 0.020 3.980 22 N -0.911 5.911 23 Si 0.952 3.048 24 H -0.281 1.281 25 H -0.281 1.281 26 H -0.267 1.267 27 C 0.060 3.940 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.423 0.577 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.040 0.960 48 H 0.264 0.736 49 H 0.034 0.966 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 2.529 -7.279 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.270 5.270 4 C -0.077 4.077 5 C -0.149 4.149 6 C -0.155 4.155 7 C -0.099 4.099 8 H 0.104 0.896 9 C -0.005 4.005 10 N -0.875 5.875 11 S 2.805 3.195 12 O -0.995 6.995 13 O -1.000 7.000 14 N -0.839 5.839 15 C -0.041 4.041 16 C 0.170 3.830 17 H 0.044 0.956 18 C -0.196 4.196 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.778 3.222 24 H -0.207 1.207 25 H -0.206 1.206 26 H -0.192 1.192 27 C -0.069 4.069 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.527 2.820 -5.999 20.621 hybrid contribution 1.457 -0.593 -0.651 1.702 sum -18.070 2.227 -6.650 19.383 Atomic orbital electron populations 1.21759 0.93681 1.02221 1.02331 1.22132 0.97016 0.88237 1.00778 1.61961 1.13028 1.16252 1.35742 1.22219 1.01322 0.94791 0.89412 1.21562 0.95237 0.95438 1.02698 1.21669 0.96814 1.00666 0.96305 1.21257 0.92338 0.96282 1.00019 0.89639 1.21355 0.96802 0.81131 1.01203 1.55628 1.34026 1.14377 1.83432 1.01198 0.73141 0.71643 0.73474 1.93517 1.86980 1.31769 1.87209 1.93542 1.86414 1.69054 1.51033 1.57569 1.56268 1.21495 1.48589 1.21316 0.99496 0.91484 0.91762 1.18390 0.93211 0.76498 0.94922 0.95556 1.21964 0.97992 1.02266 0.97364 1.21637 0.93580 0.92713 1.50102 0.92790 1.25585 1.02434 0.95171 0.94824 1.69948 1.37004 0.97641 1.50399 0.85711 0.80720 0.77159 0.78627 1.20666 1.20634 1.19232 1.22012 0.87873 0.96018 1.00948 0.92264 0.91264 0.92356 0.95030 0.90968 0.95323 0.89503 0.89952 0.91208 0.90738 0.92009 0.91288 0.92148 0.74036 0.94204 0.90383 0.90168 0.93996 0.91484 0.94129 0.92650 0.94742 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.84 71.98 0.71 -1.14 16 2 C 0.05 0.76 5.68 86.30 0.49 1.25 16 3 N -0.54 -10.16 4.66 -896.38 -4.17 -14.33 16 4 C 0.05 0.79 5.29 86.32 0.46 1.24 16 5 C -0.11 -1.62 6.09 30.64 0.19 -1.44 16 6 C -0.12 -2.01 5.13 30.67 0.16 -1.85 16 7 C -0.08 -1.65 2.46 -10.74 -0.03 -1.67 16 8 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 9 C 0.12 3.28 5.64 86.38 0.49 3.76 16 10 N -1.11 -30.81 5.94 -187.48 -1.11 -31.93 16 11 S 2.80 107.84 6.09 -56.49 -0.34 107.50 16 12 O -1.01 -40.90 17.21 -128.00 -2.20 -43.11 16 13 O -1.02 -48.37 16.17 -128.00 -2.07 -50.44 16 14 N -1.00 -40.34 3.12 -520.45 -1.62 -41.96 16 15 C 0.10 3.57 9.53 127.77 1.22 4.79 16 16 C 0.27 13.20 2.62 44.24 0.12 13.32 16 17 H 0.03 1.45 6.91 -2.39 -0.02 1.43 16 18 C -0.14 -5.89 8.95 71.98 0.64 -5.25 16 19 C -0.54 -29.22 8.37 25.60 0.21 -29.01 16 20 H 0.05 2.92 7.65 -2.91 -0.02 2.90 16 21 C 0.02 1.08 5.30 84.66 0.45 1.53 16 22 N -0.91 -50.54 11.32 21.45 0.24 -50.29 16 23 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 C 0.06 1.27 4.74 86.32 0.41 1.68 16 28 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.52 8.12 -2.39 -0.02 0.51 16 32 H 0.07 1.22 7.99 -2.39 -0.02 1.21 16 33 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.09 1.17 6.21 -2.39 -0.01 1.15 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.16 6.98 -2.39 -0.02 1.14 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.89 6.18 -2.39 -0.01 1.87 16 40 H 0.06 1.88 7.75 -2.39 -0.02 1.87 16 41 H 0.42 9.18 7.45 -96.74 -0.72 8.46 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 2.53 6.43 -2.39 -0.02 2.52 16 44 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 45 H 0.04 1.70 6.66 -2.38 -0.02 1.69 16 46 H 0.07 3.28 6.07 -2.38 -0.01 3.27 16 47 H 0.04 1.47 6.18 -2.39 -0.01 1.46 16 48 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 1.62 8.02 -2.38 -0.02 1.60 16 Total: -1.00 -67.25 389.42 -3.55 -70.80 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.20 Total: 21.24 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 5.51 Total: -12.79 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -6.67 Total: -138.52 kcal Atomic # 8 Polarization: -89.28 SS G_CDS: -4.27 Total: -93.55 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 107.84 SS G_CDS: -0.34 Total: 107.50 kcal Total: -67.25 -3.55 -70.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330396492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.138 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds