Wall clock time and date at job start Tue Mar 31 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47505 * 2 1 4 4 C 1.46895 * 110.99834 * 72.39206 * 3 2 1 5 5 C 1.53008 * 109.47167 * 199.66776 * 4 3 2 6 6 C 1.46896 * 111.00144 * 196.34406 * 3 2 1 7 7 H 1.09004 * 110.77994 * 186.78637 * 6 3 2 8 8 C 1.55157 * 110.72174 * 63.54825 * 6 3 2 9 9 C 1.55128 * 101.48955 * 205.97097 * 8 6 3 10 10 N 1.47425 * 104.72150 * 37.29214 * 9 8 6 11 11 S 1.65594 * 125.64730 * 155.82024 * 10 9 8 12 12 O 1.42098 * 106.40326 * 156.15465 * 11 10 9 13 13 O 1.42099 * 106.40333 * 23.23013 * 11 10 9 14 14 N 1.65610 * 107.21853 * 269.69233 * 11 10 9 15 15 C 1.46496 * 119.99834 * 270.00149 * 14 11 10 16 16 C 1.46496 * 119.99858 * 89.99929 * 14 11 10 17 17 H 1.08998 * 109.47169 * 0.02562 * 16 14 11 18 18 C 1.53004 * 109.47185 * 119.99919 * 16 14 11 19 19 C 1.50694 * 109.47157 * 240.00019 * 16 14 11 20 20 H 1.08000 * 119.99924 * 334.62905 * 19 16 14 21 21 C 1.37884 * 119.99897 * 154.62892 * 19 16 14 22 22 N 1.31516 * 119.99756 * 174.79226 * 21 19 16 23 23 Si 1.86799 * 119.99900 * 354.79341 * 21 19 16 24 24 H 1.48497 * 109.47075 * 275.09703 * 23 21 19 25 25 H 1.48495 * 109.46960 * 35.10427 * 23 21 19 26 26 H 1.48499 * 109.46557 * 155.09994 * 23 21 19 27 27 C 1.47020 * 108.70253 * 335.55626 * 10 9 8 28 28 H 1.09006 * 109.46767 * 299.99868 * 1 2 3 29 29 H 1.09000 * 109.47454 * 59.99611 * 1 2 3 30 30 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46741 * 239.99576 * 2 1 3 32 32 H 1.09000 * 109.47454 * 120.00389 * 2 1 3 33 33 H 1.09004 * 109.47411 * 319.66149 * 4 3 2 34 34 H 1.08994 * 109.47706 * 79.66485 * 4 3 2 35 35 H 1.08992 * 109.47198 * 184.85597 * 5 4 3 36 36 H 1.09001 * 109.46829 * 304.85442 * 5 4 3 37 37 H 1.08998 * 109.47120 * 64.85104 * 5 4 3 38 38 H 1.09000 * 111.00441 * 324.20925 * 8 6 3 39 39 H 1.08999 * 111.00663 * 88.02029 * 8 6 3 40 40 H 1.08999 * 110.49764 * 278.45233 * 9 8 6 41 41 H 1.09000 * 110.34521 * 156.05728 * 9 8 6 42 42 H 1.09004 * 109.46841 * 270.00210 * 15 14 11 43 43 H 1.08997 * 109.47256 * 29.99881 * 15 14 11 44 44 H 1.08995 * 109.47293 * 150.00059 * 15 14 11 45 45 H 1.08991 * 109.47182 * 175.07723 * 18 16 14 46 46 H 1.08994 * 109.47119 * 295.08189 * 18 16 14 47 47 H 1.08998 * 109.46703 * 55.07942 * 18 16 14 48 48 H 0.97000 * 119.99798 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.88363 * 120.70358 * 27 10 9 50 50 H 1.09004 * 109.88201 * 241.71336 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8041 2.0195 1.3071 5 6 1.8545 3.5407 1.1502 6 6 3.4359 1.4425 -0.3859 7 1 3.8275 2.4531 -0.2699 8 6 3.6288 0.9429 -1.8421 9 6 5.0981 0.4464 -1.8063 10 7 5.2560 -0.1607 -0.4722 11 16 6.3673 -1.3185 -0.0641 12 8 6.5612 -1.2117 1.3395 13 8 7.4260 -1.2081 -1.0056 14 7 5.6592 -2.7922 -0.3275 15 6 4.9070 -3.4458 0.7463 16 6 5.7849 -3.4421 -1.6344 17 1 6.3748 -2.8108 -2.2989 18 6 6.4801 -4.7947 -1.4666 19 6 4.4145 -3.6516 -2.2252 20 1 3.5536 -3.7296 -1.5778 21 6 4.2598 -3.7436 -3.5922 22 7 3.0818 -4.0282 -4.1029 23 14 5.7234 -3.4640 -4.7187 24 1 5.8799 -2.0098 -4.9752 25 1 6.9531 -3.9878 -4.0717 26 1 5.5006 -4.1724 -6.0047 27 6 4.2676 0.4367 0.4376 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8291 1.7267 1.6968 34 1 2.5829 1.6997 1.9993 35 1 1.7809 4.0098 2.1312 36 1 2.7958 3.8264 0.6805 37 1 1.0230 3.8694 0.5268 38 1 2.9427 0.1270 -2.0694 39 1 3.5109 1.7595 -2.5543 40 1 5.7866 1.2828 -1.9264 41 1 5.2655 -0.2985 -2.5843 42 1 5.5787 -4.0767 1.3284 43 1 4.4670 -2.6883 1.3948 44 1 4.1157 -4.0587 0.3147 45 1 6.4956 -5.3165 -2.4234 46 1 7.5021 -4.6376 -1.1217 47 1 5.9378 -5.3936 -0.7349 48 1 2.9728 -4.0925 -5.0647 49 1 3.6174 -0.3399 0.8403 50 1 4.7771 0.9523 1.2517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330409059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:50 Heat of formation + Delta-G solvation = -59.484865 kcal Electronic energy + Delta-G solvation = -30025.500197 eV Core-core repulsion = 26215.055530 eV Total energy + Delta-G solvation = -3810.444667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.57681 -36.83053 -36.34489 -36.19072 -35.36701 -32.52780 -31.86555 -30.73124 -29.96316 -29.19609 -26.95295 -25.71838 -25.17082 -23.21883 -22.83760 -21.68323 -20.63034 -19.28586 -18.52900 -17.56268 -17.21552 -16.67513 -16.26277 -15.62611 -15.48294 -14.88667 -14.56685 -14.31055 -13.96927 -13.85447 -13.47778 -13.25911 -13.02552 -12.81327 -12.64783 -12.50479 -12.38983 -12.28971 -12.00415 -11.85101 -11.76326 -11.72011 -11.54341 -11.50606 -11.49300 -11.42937 -11.23778 -11.14496 -10.92792 -10.88291 -10.63136 -10.55347 -10.42057 -10.26736 -9.84245 -9.46235 -8.76281 -8.62355 -8.31507 -8.08950 -6.23218 -4.23506 1.07408 3.19761 3.29670 3.35624 3.36906 3.78865 4.05410 4.29381 4.48508 4.72815 4.87103 4.95093 5.08346 5.14720 5.17424 5.19330 5.39121 5.44121 5.46174 5.51252 5.53907 5.61612 5.64181 5.76553 5.85518 5.93550 5.95985 5.98538 6.04380 6.08254 6.10758 6.12714 6.20082 6.28370 6.31463 6.39645 6.43259 6.45536 6.52234 6.64751 6.65414 6.96655 7.09428 7.14293 7.18433 7.39712 7.63038 8.37365 8.80655 9.38435 10.88531 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.005338 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.146417 B = 5243.857831 C = 6113.017094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.524 5.524 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.076 3.924 7 H 0.096 0.904 8 C -0.121 4.121 9 C 0.124 3.876 10 N -1.012 6.012 11 S 2.790 3.210 12 O -0.992 6.992 13 O -0.980 6.980 14 N -0.984 5.984 15 C 0.107 3.893 16 C 0.237 3.763 17 H 0.052 0.948 18 C -0.147 4.147 19 C -0.521 4.521 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.888 5.888 23 Si 0.855 3.145 24 H -0.270 1.270 25 H -0.258 1.258 26 H -0.285 1.285 27 C 0.092 3.908 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.051 0.949 48 H 0.266 0.734 49 H 0.067 0.933 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 10.605 8.230 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 N -0.247 5.247 4 C -0.085 4.085 5 C -0.202 4.202 6 C -0.034 4.034 7 H 0.114 0.886 8 C -0.160 4.160 9 C -0.002 4.002 10 N -0.851 5.851 11 S 2.802 3.198 12 O -0.977 6.977 13 O -0.964 6.964 14 N -0.826 5.826 15 C -0.039 4.039 16 C 0.133 3.867 17 H 0.070 0.930 18 C -0.207 4.207 19 C -0.561 4.561 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.525 5.525 23 Si 0.681 3.319 24 H -0.196 1.196 25 H -0.182 1.182 26 H -0.210 1.210 27 C -0.036 4.036 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.337 10.934 8.078 13.794 hybrid contribution 0.745 -0.490 -0.237 0.923 sum -1.592 10.444 7.841 13.157 Atomic orbital electron populations 1.21751 0.94889 1.01578 1.01859 1.22274 0.95912 0.88596 1.02163 1.62237 1.16046 1.17863 1.28582 1.22165 1.01180 0.95277 0.89912 1.21751 1.02384 0.94892 1.01205 1.22852 0.86799 0.98491 0.95280 0.88610 1.22935 0.96100 1.01743 0.95203 1.21989 0.96497 0.97781 0.83958 1.59010 1.52083 1.55714 1.18283 1.01624 0.73286 0.72328 0.72610 1.93534 1.85401 1.86802 1.31925 1.93564 1.52097 1.86421 1.64363 1.57791 1.68859 1.34959 1.20992 1.21204 0.96514 0.97758 0.88456 1.19042 0.97385 0.90898 0.79382 0.93009 1.22249 0.97705 0.99349 1.01368 1.21146 0.92262 1.50462 0.92180 0.89997 1.24881 0.95372 0.94200 0.97838 1.69879 1.22686 1.47372 1.12586 0.87228 0.84304 0.79486 0.80879 1.19579 1.18217 1.21042 1.22366 0.91169 0.97035 0.93057 0.93262 0.91978 0.92173 0.89061 0.94455 0.90676 0.94528 0.92709 0.92686 0.92086 0.89073 0.89979 0.91849 0.89916 0.93787 0.93221 0.89932 0.92396 0.95474 0.92959 0.92397 0.91475 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.98 37.15 0.37 -1.24 16 2 C 0.04 0.48 4.55 -3.83 -0.02 0.46 16 3 N -0.52 -6.15 4.40 -224.46 -0.99 -7.14 16 4 C 0.04 0.42 5.46 -3.82 -0.02 0.40 16 5 C -0.14 -1.25 10.09 37.16 0.37 -0.88 16 6 C 0.08 0.94 2.89 -65.88 -0.19 0.75 16 7 H 0.10 1.07 6.65 -51.93 -0.35 0.72 16 8 C -0.12 -1.66 6.57 -24.46 -0.16 -1.82 16 9 C 0.12 1.96 6.99 -2.41 -0.02 1.94 16 10 N -1.01 -17.21 3.75 -111.29 -0.42 -17.63 16 11 S 2.79 55.61 6.30 -107.50 -0.68 54.93 16 12 O -0.99 -20.55 16.79 -57.17 -0.96 -21.51 16 13 O -0.98 -22.03 16.28 -57.17 -0.93 -22.96 16 14 N -0.98 -19.92 3.12 -115.86 -0.36 -20.28 16 15 C 0.11 1.87 9.22 59.84 0.55 2.42 16 16 C 0.24 5.38 2.18 -69.09 -0.15 5.23 16 17 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 18 C -0.15 -3.09 8.90 37.16 0.33 -2.76 16 19 C -0.52 -13.11 8.69 -34.44 -0.30 -13.41 16 20 H 0.08 2.20 6.89 -52.49 -0.36 1.84 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -24.82 13.96 55.43 0.77 -24.05 16 23 Si 0.85 20.24 26.21 -169.99 -4.46 15.78 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.26 -5.96 6.17 56.52 0.35 -5.61 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.09 1.32 5.61 -3.07 -0.02 1.30 16 28 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.37 5.78 -51.93 -0.30 1.07 16 32 H 0.04 0.48 6.49 -51.93 -0.34 0.14 16 33 H 0.07 0.71 6.27 -51.93 -0.33 0.38 16 34 H 0.04 0.37 7.33 -51.93 -0.38 -0.01 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.42 5.95 -51.93 -0.31 1.11 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 44 H 0.08 1.48 6.62 -51.93 -0.34 1.13 16 45 H 0.06 1.23 6.78 -51.93 -0.35 0.88 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.07 0.98 5.49 -51.93 -0.29 0.69 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -29.84 384.99 -10.04 -39.88 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.48 Total: 2.72 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 0.66 Total: -5.55 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -0.99 Total: -69.09 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.89 Total: -44.47 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.46 Total: 15.78 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.68 Total: 54.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.84 -10.04 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330409059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.605 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds