Wall clock time and date at job start Tue Mar 31 2020 17:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47505 * 2 1 4 4 C 1.46895 * 110.99834 * 72.39206 * 3 2 1 5 5 C 1.53008 * 109.47167 * 199.66776 * 4 3 2 6 6 C 1.46896 * 111.00144 * 196.34406 * 3 2 1 7 7 H 1.09004 * 110.77994 * 186.78637 * 6 3 2 8 8 C 1.55157 * 110.72174 * 63.54825 * 6 3 2 9 9 C 1.55128 * 101.48955 * 205.97097 * 8 6 3 10 10 N 1.47425 * 104.72150 * 37.29214 * 9 8 6 11 11 S 1.65594 * 125.64730 * 155.82024 * 10 9 8 12 12 O 1.42098 * 106.40326 * 156.15465 * 11 10 9 13 13 O 1.42099 * 106.40333 * 23.23013 * 11 10 9 14 14 N 1.65610 * 107.21853 * 269.69233 * 11 10 9 15 15 C 1.46496 * 119.99834 * 270.00149 * 14 11 10 16 16 C 1.46496 * 119.99858 * 89.99929 * 14 11 10 17 17 H 1.08998 * 109.47169 * 0.02562 * 16 14 11 18 18 C 1.53004 * 109.47185 * 119.99919 * 16 14 11 19 19 C 1.50694 * 109.47157 * 240.00019 * 16 14 11 20 20 H 1.08000 * 119.99924 * 334.62905 * 19 16 14 21 21 C 1.37884 * 119.99897 * 154.62892 * 19 16 14 22 22 N 1.31516 * 119.99756 * 174.79226 * 21 19 16 23 23 Si 1.86799 * 119.99900 * 354.79341 * 21 19 16 24 24 H 1.48497 * 109.47075 * 275.09703 * 23 21 19 25 25 H 1.48495 * 109.46960 * 35.10427 * 23 21 19 26 26 H 1.48499 * 109.46557 * 155.09994 * 23 21 19 27 27 C 1.47020 * 108.70253 * 335.55626 * 10 9 8 28 28 H 1.09006 * 109.46767 * 299.99868 * 1 2 3 29 29 H 1.09000 * 109.47454 * 59.99611 * 1 2 3 30 30 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46741 * 239.99576 * 2 1 3 32 32 H 1.09000 * 109.47454 * 120.00389 * 2 1 3 33 33 H 1.09004 * 109.47411 * 319.66149 * 4 3 2 34 34 H 1.08994 * 109.47706 * 79.66485 * 4 3 2 35 35 H 1.08992 * 109.47198 * 184.85597 * 5 4 3 36 36 H 1.09001 * 109.46829 * 304.85442 * 5 4 3 37 37 H 1.08998 * 109.47120 * 64.85104 * 5 4 3 38 38 H 1.09000 * 111.00441 * 324.20925 * 8 6 3 39 39 H 1.08999 * 111.00663 * 88.02029 * 8 6 3 40 40 H 1.08999 * 110.49764 * 278.45233 * 9 8 6 41 41 H 1.09000 * 110.34521 * 156.05728 * 9 8 6 42 42 H 1.09004 * 109.46841 * 270.00210 * 15 14 11 43 43 H 1.08997 * 109.47256 * 29.99881 * 15 14 11 44 44 H 1.08995 * 109.47293 * 150.00059 * 15 14 11 45 45 H 1.08991 * 109.47182 * 175.07723 * 18 16 14 46 46 H 1.08994 * 109.47119 * 295.08189 * 18 16 14 47 47 H 1.08998 * 109.46703 * 55.07942 * 18 16 14 48 48 H 0.97000 * 119.99798 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.88363 * 120.70358 * 27 10 9 50 50 H 1.09004 * 109.88201 * 241.71336 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8041 2.0195 1.3071 5 6 1.8545 3.5407 1.1502 6 6 3.4359 1.4425 -0.3859 7 1 3.8275 2.4531 -0.2699 8 6 3.6288 0.9429 -1.8421 9 6 5.0981 0.4464 -1.8063 10 7 5.2560 -0.1607 -0.4722 11 16 6.3673 -1.3185 -0.0641 12 8 6.5612 -1.2117 1.3395 13 8 7.4260 -1.2081 -1.0056 14 7 5.6592 -2.7922 -0.3275 15 6 4.9070 -3.4458 0.7463 16 6 5.7849 -3.4421 -1.6344 17 1 6.3748 -2.8108 -2.2989 18 6 6.4801 -4.7947 -1.4666 19 6 4.4145 -3.6516 -2.2252 20 1 3.5536 -3.7296 -1.5778 21 6 4.2598 -3.7436 -3.5922 22 7 3.0818 -4.0282 -4.1029 23 14 5.7234 -3.4640 -4.7187 24 1 5.8799 -2.0098 -4.9752 25 1 6.9531 -3.9878 -4.0717 26 1 5.5006 -4.1724 -6.0047 27 6 4.2676 0.4367 0.4376 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8291 1.7267 1.6968 34 1 2.5829 1.6997 1.9993 35 1 1.7809 4.0098 2.1312 36 1 2.7958 3.8264 0.6805 37 1 1.0230 3.8694 0.5268 38 1 2.9427 0.1270 -2.0694 39 1 3.5109 1.7595 -2.5543 40 1 5.7866 1.2828 -1.9264 41 1 5.2655 -0.2985 -2.5843 42 1 5.5787 -4.0767 1.3284 43 1 4.4670 -2.6883 1.3948 44 1 4.1157 -4.0587 0.3147 45 1 6.4956 -5.3165 -2.4234 46 1 7.5021 -4.6376 -1.1217 47 1 5.9378 -5.3936 -0.7349 48 1 2.9728 -4.0925 -5.0647 49 1 3.6174 -0.3399 0.8403 50 1 4.7771 0.9523 1.2517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330409059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:49 Heat of formation + Delta-G solvation = -80.866136 kcal Electronic energy + Delta-G solvation = -30026.427358 eV Core-core repulsion = 26215.055530 eV Total energy + Delta-G solvation = -3811.371828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64931 -38.48887 -38.04374 -37.29486 -37.02604 -34.49193 -32.71565 -31.86786 -31.70608 -30.30444 -27.99057 -27.31886 -27.03154 -24.20149 -23.88691 -22.82721 -22.35669 -20.37696 -19.94419 -19.26987 -18.75829 -18.44191 -17.55350 -17.05948 -16.61961 -16.29764 -15.91492 -15.54171 -15.29216 -14.97510 -14.89747 -14.62197 -14.45915 -14.43172 -14.31280 -13.87940 -13.60297 -13.51376 -13.39340 -13.31925 -13.18723 -13.15583 -13.04337 -12.73975 -12.63892 -12.63251 -12.52629 -12.41631 -12.31732 -12.26879 -12.15003 -11.99577 -11.74895 -11.42082 -11.34359 -11.32838 -10.72046 -10.05416 -9.75223 -9.26035 -8.28840 -6.30938 -0.48108 1.30877 1.37742 1.45269 1.84299 2.32176 2.43527 2.87007 3.06777 3.12070 3.58283 3.71858 3.92362 3.98069 4.09260 4.20879 4.30691 4.34211 4.38393 4.41303 4.47973 4.60511 4.62626 4.63897 4.72560 4.73037 4.77986 4.80072 4.81266 4.88552 4.93667 4.96538 5.04291 5.05616 5.11743 5.17395 5.17979 5.24168 5.32262 5.37431 5.38797 5.46055 5.46963 5.53144 5.89692 6.11244 6.21996 6.35124 6.73460 7.33618 8.85904 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.005338 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.146417 B = 5243.857831 C = 6113.017094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 N -0.522 5.522 4 C 0.040 3.960 5 C -0.140 4.140 6 C 0.086 3.914 7 H 0.119 0.881 8 C -0.115 4.115 9 C 0.117 3.883 10 N -1.014 6.014 11 S 2.801 3.199 12 O -1.000 7.000 13 O -1.007 7.007 14 N -0.992 5.992 15 C 0.103 3.897 16 C 0.239 3.761 17 H 0.040 0.960 18 C -0.147 4.147 19 C -0.508 4.508 20 H 0.058 0.942 21 C 0.040 3.960 22 N -0.929 5.929 23 Si 0.894 3.106 24 H -0.267 1.267 25 H -0.248 1.248 26 H -0.282 1.282 27 C 0.086 3.914 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.266 0.734 49 H 0.062 0.938 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 12.215 9.402 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 N -0.246 5.246 4 C -0.087 4.087 5 C -0.197 4.197 6 C -0.024 4.024 7 H 0.137 0.863 8 C -0.154 4.154 9 C -0.008 4.008 10 N -0.855 5.855 11 S 2.813 3.187 12 O -0.984 6.984 13 O -0.991 6.991 14 N -0.833 5.833 15 C -0.043 4.043 16 C 0.134 3.866 17 H 0.058 0.942 18 C -0.207 4.207 19 C -0.548 4.548 20 H 0.076 0.924 21 C -0.160 4.160 22 N -0.568 5.568 23 Si 0.719 3.281 24 H -0.192 1.192 25 H -0.172 1.172 26 H -0.208 1.208 27 C -0.041 4.041 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.003 12.536 9.274 15.722 hybrid contribution 0.583 -0.955 -0.500 1.226 sum -1.421 11.581 8.774 14.599 Atomic orbital electron populations 1.21693 0.93703 1.01577 1.02494 1.22181 0.96891 0.89097 1.00579 1.62277 1.15322 1.17058 1.29938 1.22274 1.01589 0.96122 0.88750 1.21720 1.02291 0.93639 1.02098 1.22849 0.86995 0.98856 0.93713 0.86334 1.22875 0.94014 1.01610 0.96924 1.22149 0.98519 0.97617 0.82553 1.58811 1.52162 1.55126 1.19354 1.01100 0.73231 0.72345 0.72057 1.93518 1.85743 1.86944 1.32168 1.93523 1.53793 1.86800 1.65033 1.57708 1.69368 1.35603 1.20571 1.21356 0.96524 0.98360 0.88025 1.18872 0.95692 0.91774 0.80260 0.94247 1.22207 0.98615 0.98276 1.01599 1.21228 0.92812 1.48950 0.91802 0.92434 1.25412 0.97076 0.94404 0.99139 1.69977 1.24450 1.49546 1.12831 0.86573 0.82338 0.79618 0.79601 1.19173 1.17171 1.20754 1.22595 0.90858 0.97407 0.93241 0.91502 0.92367 0.92552 0.91992 0.94722 0.89957 0.94519 0.91215 0.92696 0.92245 0.91564 0.87698 0.89488 0.92755 0.92011 0.91578 0.90828 0.92940 0.93908 0.91751 0.92429 0.91956 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.98 71.98 0.72 -2.25 16 2 C 0.04 1.00 4.55 86.30 0.39 1.40 16 3 N -0.52 -11.40 4.40 -864.06 -3.80 -15.20 16 4 C 0.04 0.70 5.46 86.31 0.47 1.17 16 5 C -0.14 -2.00 10.09 71.98 0.73 -1.27 16 6 C 0.09 1.98 2.89 46.10 0.13 2.12 16 7 H 0.12 2.25 6.65 -2.39 -0.02 2.23 16 8 C -0.12 -3.06 6.57 32.06 0.21 -2.85 16 9 C 0.12 3.63 6.99 86.93 0.61 4.24 16 10 N -1.01 -33.70 3.75 -506.01 -1.90 -35.60 16 11 S 2.80 109.51 6.30 -56.49 -0.36 109.15 16 12 O -1.00 -39.95 16.79 -128.00 -2.15 -42.10 16 13 O -1.01 -44.73 16.28 -128.00 -2.08 -46.82 16 14 N -0.99 -39.64 3.12 -520.48 -1.62 -41.27 16 15 C 0.10 3.50 9.22 127.77 1.18 4.68 16 16 C 0.24 10.81 2.18 44.25 0.10 10.91 16 17 H 0.04 1.90 4.65 -2.39 -0.01 1.89 16 18 C -0.15 -6.03 8.90 71.98 0.64 -5.39 16 19 C -0.51 -26.02 8.69 25.60 0.22 -25.80 16 20 H 0.06 3.19 6.89 -2.91 -0.02 3.17 16 21 C 0.04 2.13 5.47 84.66 0.46 2.59 16 22 N -0.93 -53.18 13.96 21.45 0.30 -52.88 16 23 Si 0.89 41.66 26.21 68.60 1.80 43.46 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.25 -11.08 6.17 99.48 0.61 -10.46 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 C 0.09 2.35 5.61 86.73 0.49 2.84 16 28 H 0.07 1.20 6.56 -2.38 -0.02 1.18 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.93 5.78 -2.38 -0.01 1.92 16 32 H 0.03 0.87 6.49 -2.39 -0.02 0.86 16 33 H 0.08 1.33 6.27 -2.38 -0.01 1.31 16 34 H 0.04 0.65 7.33 -2.39 -0.02 0.64 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.79 6.70 -2.39 -0.02 0.77 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 2.12 5.95 -2.39 -0.01 2.11 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.01 7.79 -2.39 -0.02 1.99 16 44 H 0.07 2.63 6.62 -2.39 -0.02 2.62 16 45 H 0.05 2.18 6.78 -2.39 -0.02 2.16 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 2.44 7.51 -2.39 -0.02 2.42 16 48 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.06 1.76 5.49 -2.38 -0.01 1.75 16 50 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -63.69 384.99 -2.64 -66.33 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.83 Total: 22.54 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 6.35 Total: -7.62 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -7.03 Total: -144.94 kcal Atomic # 8 Polarization: -84.68 SS G_CDS: -4.23 Total: -88.91 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.80 Total: 43.46 kcal Atomic # 16 Polarization: 109.51 SS G_CDS: -0.36 Total: 109.15 kcal Total: -63.69 -2.64 -66.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330409059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.531 kcal (2) G-P(sol) polarization free energy of solvation -63.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds