Wall clock time and date at job start Tue Mar 31 2020 17:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47184 * 2 1 4 4 C 1.46894 * 111.00524 * 301.93657 * 3 2 1 5 5 C 1.53004 * 109.47235 * 296.74941 * 4 3 2 6 6 C 1.46909 * 110.99908 * 65.89190 * 3 2 1 7 7 H 1.09004 * 110.88391 * 303.87755 * 6 3 2 8 8 C 1.55151 * 111.00736 * 67.80109 * 6 3 2 9 9 C 1.54334 * 103.02243 * 153.38254 * 8 6 3 10 10 N 1.47023 * 107.26264 * 338.14274 * 9 8 6 11 11 S 1.65600 * 125.64361 * 178.84789 * 10 9 8 12 12 O 1.42109 * 106.39881 * 156.14994 * 11 10 9 13 13 O 1.42099 * 106.40308 * 23.23362 * 11 10 9 14 14 N 1.65597 * 107.21803 * 269.68973 * 11 10 9 15 15 C 1.46498 * 119.99966 * 269.99944 * 14 11 10 16 16 C 1.46499 * 119.99788 * 90.00601 * 14 11 10 17 17 H 1.09000 * 109.47037 * 359.97438 * 16 14 11 18 18 C 1.53001 * 109.47468 * 119.99769 * 16 14 11 19 19 C 1.50700 * 109.46957 * 239.99930 * 16 14 11 20 20 H 1.08004 * 119.99883 * 334.09780 * 19 16 14 21 21 C 1.37877 * 120.00336 * 154.10076 * 19 16 14 22 22 N 1.31510 * 120.00396 * 174.48891 * 21 19 16 23 23 Si 1.86800 * 119.99530 * 354.75969 * 21 19 16 24 24 H 1.48496 * 109.47605 * 274.99675 * 23 21 19 25 25 H 1.48494 * 109.47475 * 35.00212 * 23 21 19 26 26 H 1.48507 * 109.46742 * 154.99745 * 23 21 19 27 27 C 1.47425 * 108.70439 * 358.58277 * 10 9 8 28 28 H 1.09003 * 109.47237 * 185.05371 * 1 2 3 29 29 H 1.09002 * 109.46910 * 305.04459 * 1 2 3 30 30 H 1.08993 * 109.47138 * 65.05176 * 1 2 3 31 31 H 1.09000 * 109.47229 * 240.00187 * 2 1 3 32 32 H 1.08996 * 109.47189 * 120.00296 * 2 1 3 33 33 H 1.09010 * 109.47342 * 56.74260 * 4 3 2 34 34 H 1.08998 * 109.47662 * 176.74414 * 4 3 2 35 35 H 1.08994 * 109.47389 * 185.95250 * 5 4 3 36 36 H 1.09005 * 109.46659 * 305.95049 * 5 4 3 37 37 H 1.08994 * 109.47328 * 65.94557 * 5 4 3 38 38 H 1.09003 * 110.72275 * 271.94498 * 8 6 3 39 39 H 1.09005 * 110.71918 * 35.03770 * 8 6 3 40 40 H 1.08992 * 109.99034 * 218.66942 * 9 8 6 41 41 H 1.08994 * 109.77883 * 97.49543 * 9 8 6 42 42 H 1.08997 * 109.47420 * 270.00059 * 15 14 11 43 43 H 1.08993 * 109.47143 * 30.00381 * 15 14 11 44 44 H 1.09001 * 109.46762 * 150.00003 * 15 14 11 45 45 H 1.09003 * 109.47181 * 295.17255 * 18 16 14 46 46 H 1.09002 * 109.46634 * 55.16853 * 18 16 14 47 47 H 1.08994 * 109.47056 * 175.16674 * 18 16 14 48 48 H 0.97000 * 119.99921 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.36329 * 143.19270 * 27 10 9 50 50 H 1.08997 * 110.36974 * 265.40575 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5113 2.1232 -1.1638 5 6 2.0473 1.4847 -2.4467 6 6 1.6670 2.0680 1.2519 7 1 0.5910 2.0340 1.4233 8 6 2.4417 1.4636 2.4526 9 6 2.5111 2.6399 3.4493 10 7 2.3279 3.8775 2.6770 11 16 2.2964 5.4101 3.3034 12 8 2.6603 6.2842 2.2436 13 8 2.9961 5.3532 4.5388 14 7 0.7199 5.7558 3.6742 15 6 -0.1478 6.3813 2.6733 16 6 0.1931 5.4362 5.0033 17 1 0.9786 4.9794 5.6053 18 6 -0.2897 6.7192 5.6828 19 6 -0.9594 4.4746 4.8689 20 1 -1.5383 4.4495 3.9575 21 6 -1.2750 3.6268 5.9095 22 7 -2.3446 2.8652 5.8360 23 14 -0.1874 3.5657 7.4269 24 1 0.9387 2.6268 7.1915 25 1 0.3491 4.9219 7.7064 26 1 -0.9855 3.0999 8.5895 27 6 2.1833 3.5285 1.2520 28 1 -0.3634 -1.0237 0.0905 29 1 -0.3633 0.5901 0.8414 30 1 -0.3633 0.4334 -0.9317 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4217 2.0885 -1.1685 34 1 1.8415 3.1605 -1.1087 35 1 1.7578 2.0928 -3.3037 36 1 3.1344 1.4234 -2.3953 37 1 1.6317 0.4829 -2.5551 38 1 1.8947 0.6238 2.8811 39 1 3.4428 1.1560 2.1502 40 1 3.4821 2.6522 3.9442 41 1 1.7167 2.5437 4.1893 42 1 -0.0804 7.4657 2.7606 43 1 0.1695 6.0767 1.6761 44 1 -1.1784 6.0669 2.8385 45 1 0.5597 7.3796 5.8575 46 1 -1.0134 7.2204 5.0399 47 1 -0.7594 6.4716 6.6346 48 1 -2.5663 2.2685 6.5679 49 1 1.4593 4.1868 0.7718 50 1 3.1467 3.5921 0.7462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330409069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:53 Heat of formation + Delta-G solvation = -62.794439 kcal Electronic energy + Delta-G solvation = -29721.363879 eV Core-core repulsion = 25910.775698 eV Total energy + Delta-G solvation = -3810.588181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.42894 -36.80680 -36.64108 -36.33189 -35.34029 -32.52963 -31.59650 -30.64980 -29.95902 -29.27336 -27.07967 -25.70923 -25.17218 -24.02122 -22.37120 -21.32193 -20.61218 -19.35330 -18.49065 -17.54287 -17.15170 -16.85046 -16.37986 -15.77883 -15.45730 -15.11935 -14.50589 -14.03369 -13.85660 -13.75653 -13.28939 -13.17335 -13.13570 -13.04941 -12.88294 -12.61834 -12.50158 -12.26183 -12.16877 -12.00749 -11.83560 -11.76072 -11.64254 -11.48345 -11.42149 -11.30712 -11.21848 -11.02955 -10.86979 -10.82844 -10.65907 -10.60756 -10.46607 -10.40894 -9.84235 -9.45764 -8.74789 -8.61926 -8.33928 -8.09007 -6.23791 -4.24043 1.09337 3.19870 3.29486 3.34864 3.37084 3.83663 4.04392 4.29222 4.44415 4.71211 4.87918 4.99462 5.06147 5.08633 5.12227 5.22251 5.27057 5.38344 5.42185 5.43837 5.48954 5.57785 5.60489 5.74210 5.82683 5.89080 5.91915 5.95798 6.02023 6.05167 6.06319 6.08314 6.11542 6.23031 6.30182 6.37083 6.41509 6.46504 6.53492 6.66100 6.66460 6.97834 7.02129 7.07559 7.19169 7.40409 7.63680 8.37082 8.80329 9.37999 10.88089 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005000 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.154361 B = 5598.985975 C = 6619.865629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 N -0.526 5.526 4 C 0.039 3.961 5 C -0.147 4.147 6 C 0.066 3.934 7 H 0.070 0.930 8 C -0.114 4.114 9 C 0.122 3.878 10 N -1.015 6.015 11 S 2.792 3.208 12 O -0.990 6.990 13 O -0.980 6.980 14 N -0.985 5.985 15 C 0.106 3.894 16 C 0.236 3.764 17 H 0.053 0.947 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.890 5.890 23 Si 0.856 3.144 24 H -0.270 1.270 25 H -0.257 1.257 26 H -0.285 1.285 27 C 0.137 3.863 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.266 0.734 49 H 0.067 0.933 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 -4.041 -11.992 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.079 4.079 3 N -0.251 5.251 4 C -0.089 4.089 5 C -0.205 4.205 6 C -0.043 4.043 7 H 0.087 0.913 8 C -0.153 4.153 9 C -0.004 4.004 10 N -0.854 5.854 11 S 2.803 3.197 12 O -0.975 6.975 13 O -0.964 6.964 14 N -0.827 5.827 15 C -0.040 4.040 16 C 0.132 3.868 17 H 0.071 0.929 18 C -0.206 4.206 19 C -0.560 4.560 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.527 5.527 23 Si 0.682 3.318 24 H -0.195 1.195 25 H -0.181 1.181 26 H -0.210 1.210 27 C 0.011 3.989 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.748 -3.510 -11.769 14.521 hybrid contribution -0.952 -0.437 0.907 1.386 sum 6.796 -3.947 -10.863 13.407 Atomic orbital electron populations 1.22437 0.98091 1.02503 1.02391 1.22159 0.93050 0.89973 1.02702 1.62334 1.58970 1.02210 1.01539 1.22193 0.97963 0.98344 0.90351 1.21779 1.01991 1.00487 0.96204 1.22879 0.98791 0.93233 0.89424 0.91253 1.22602 1.01220 0.97236 0.94286 1.21673 1.01773 0.82663 0.94304 1.59041 1.88512 1.23063 1.14768 1.01588 0.73691 0.71908 0.72523 1.93544 1.82964 1.63157 1.57789 1.93560 1.71931 1.86551 1.44388 1.57815 1.29458 1.73853 1.21556 1.21214 0.97040 0.96460 0.89286 1.19044 0.95424 0.93922 0.78366 0.92920 1.22241 0.99492 0.98236 1.00667 1.21165 1.13441 1.18301 1.03121 0.90053 1.24893 0.94792 0.94875 0.97822 1.69883 1.24689 1.25190 1.32947 0.87211 0.81239 0.79961 0.83420 1.19544 1.18147 1.21043 1.21823 1.00749 0.94783 0.81576 0.92178 0.91829 0.92487 0.90601 0.90583 0.94158 0.90519 0.92444 0.91831 0.92894 0.90434 0.90002 0.91494 0.90534 0.93745 0.93095 0.90007 0.95416 0.92955 0.92420 0.92416 0.91461 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 9.18 37.16 0.34 -1.66 16 2 C 0.05 0.48 5.61 -3.83 -0.02 0.46 16 3 N -0.53 -5.86 4.63 -224.09 -1.04 -6.89 16 4 C 0.04 0.40 5.15 -3.83 -0.02 0.38 16 5 C -0.15 -1.23 9.60 37.16 0.36 -0.88 16 6 C 0.07 0.87 2.48 -65.56 -0.16 0.71 16 7 H 0.07 1.02 6.31 -51.93 -0.33 0.69 16 8 C -0.11 -1.49 5.62 -24.89 -0.14 -1.63 16 9 C 0.12 1.97 6.99 -3.06 -0.02 1.95 16 10 N -1.01 -17.47 3.75 -111.42 -0.42 -17.89 16 11 S 2.79 55.74 6.30 -107.50 -0.68 55.07 16 12 O -0.99 -20.38 16.80 -57.17 -0.96 -21.34 16 13 O -0.98 -22.10 16.28 -57.17 -0.93 -23.03 16 14 N -0.99 -20.03 3.12 -115.86 -0.36 -20.39 16 15 C 0.11 1.85 9.22 59.85 0.55 2.41 16 16 C 0.24 5.41 2.18 -69.08 -0.15 5.26 16 17 H 0.05 1.28 4.62 -51.93 -0.24 1.04 16 18 C -0.15 -3.09 8.91 37.16 0.33 -2.76 16 19 C -0.52 -13.27 8.69 -34.44 -0.30 -13.57 16 20 H 0.08 2.22 6.88 -52.48 -0.36 1.85 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -25.13 13.96 55.43 0.77 -24.36 16 23 Si 0.86 20.36 26.24 -169.99 -4.46 15.90 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.26 -5.97 6.21 56.52 0.35 -5.62 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C 0.14 1.99 5.12 -2.53 -0.01 1.97 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.78 6.28 -51.93 -0.33 0.45 16 30 H 0.06 0.56 6.59 -51.93 -0.34 0.22 16 31 H 0.08 0.67 6.62 -51.93 -0.34 0.32 16 32 H 0.08 0.75 7.16 -51.93 -0.37 0.38 16 33 H 0.04 0.42 6.20 -51.92 -0.32 0.10 16 34 H 0.08 0.80 6.61 -51.93 -0.34 0.45 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.42 6.83 -51.93 -0.35 0.07 16 38 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 44 H 0.08 1.47 6.62 -51.93 -0.34 1.13 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 47 H 0.06 1.23 6.86 -51.93 -0.36 0.88 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 50 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -30.23 386.05 -10.24 -40.47 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.64 Total: 1.97 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.66 Total: -5.33 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.04 Total: -69.53 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.89 Total: -44.37 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.46 Total: 15.90 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -0.68 Total: 55.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.23 -10.24 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330409069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.327 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds