Wall clock time and date at job start Tue Mar 31 2020 17:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47184 * 2 1 4 4 C 1.46894 * 111.00524 * 301.93657 * 3 2 1 5 5 C 1.53004 * 109.47235 * 296.74941 * 4 3 2 6 6 C 1.46909 * 110.99908 * 65.89190 * 3 2 1 7 7 H 1.09004 * 110.88391 * 303.87755 * 6 3 2 8 8 C 1.55151 * 111.00736 * 67.80109 * 6 3 2 9 9 C 1.54334 * 103.02243 * 153.38254 * 8 6 3 10 10 N 1.47023 * 107.26264 * 338.14274 * 9 8 6 11 11 S 1.65600 * 125.64361 * 178.84789 * 10 9 8 12 12 O 1.42109 * 106.39881 * 156.14994 * 11 10 9 13 13 O 1.42099 * 106.40308 * 23.23362 * 11 10 9 14 14 N 1.65597 * 107.21803 * 269.68973 * 11 10 9 15 15 C 1.46498 * 119.99966 * 269.99944 * 14 11 10 16 16 C 1.46499 * 119.99788 * 90.00601 * 14 11 10 17 17 H 1.09000 * 109.47037 * 359.97438 * 16 14 11 18 18 C 1.53001 * 109.47468 * 119.99769 * 16 14 11 19 19 C 1.50700 * 109.46957 * 239.99930 * 16 14 11 20 20 H 1.08004 * 119.99883 * 334.09780 * 19 16 14 21 21 C 1.37877 * 120.00336 * 154.10076 * 19 16 14 22 22 N 1.31510 * 120.00396 * 174.48891 * 21 19 16 23 23 Si 1.86800 * 119.99530 * 354.75969 * 21 19 16 24 24 H 1.48496 * 109.47605 * 274.99675 * 23 21 19 25 25 H 1.48494 * 109.47475 * 35.00212 * 23 21 19 26 26 H 1.48507 * 109.46742 * 154.99745 * 23 21 19 27 27 C 1.47425 * 108.70439 * 358.58277 * 10 9 8 28 28 H 1.09003 * 109.47237 * 185.05371 * 1 2 3 29 29 H 1.09002 * 109.46910 * 305.04459 * 1 2 3 30 30 H 1.08993 * 109.47138 * 65.05176 * 1 2 3 31 31 H 1.09000 * 109.47229 * 240.00187 * 2 1 3 32 32 H 1.08996 * 109.47189 * 120.00296 * 2 1 3 33 33 H 1.09010 * 109.47342 * 56.74260 * 4 3 2 34 34 H 1.08998 * 109.47662 * 176.74414 * 4 3 2 35 35 H 1.08994 * 109.47389 * 185.95250 * 5 4 3 36 36 H 1.09005 * 109.46659 * 305.95049 * 5 4 3 37 37 H 1.08994 * 109.47328 * 65.94557 * 5 4 3 38 38 H 1.09003 * 110.72275 * 271.94498 * 8 6 3 39 39 H 1.09005 * 110.71918 * 35.03770 * 8 6 3 40 40 H 1.08992 * 109.99034 * 218.66942 * 9 8 6 41 41 H 1.08994 * 109.77883 * 97.49543 * 9 8 6 42 42 H 1.08997 * 109.47420 * 270.00059 * 15 14 11 43 43 H 1.08993 * 109.47143 * 30.00381 * 15 14 11 44 44 H 1.09001 * 109.46762 * 150.00003 * 15 14 11 45 45 H 1.09003 * 109.47181 * 295.17255 * 18 16 14 46 46 H 1.09002 * 109.46634 * 55.16853 * 18 16 14 47 47 H 1.08994 * 109.47056 * 175.16674 * 18 16 14 48 48 H 0.97000 * 119.99921 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.36329 * 143.19270 * 27 10 9 50 50 H 1.08997 * 110.36974 * 265.40575 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5113 2.1232 -1.1638 5 6 2.0473 1.4847 -2.4467 6 6 1.6670 2.0680 1.2519 7 1 0.5910 2.0340 1.4233 8 6 2.4417 1.4636 2.4526 9 6 2.5111 2.6399 3.4493 10 7 2.3279 3.8775 2.6770 11 16 2.2964 5.4101 3.3034 12 8 2.6603 6.2842 2.2436 13 8 2.9961 5.3532 4.5388 14 7 0.7199 5.7558 3.6742 15 6 -0.1478 6.3813 2.6733 16 6 0.1931 5.4362 5.0033 17 1 0.9786 4.9794 5.6053 18 6 -0.2897 6.7192 5.6828 19 6 -0.9594 4.4746 4.8689 20 1 -1.5383 4.4495 3.9575 21 6 -1.2750 3.6268 5.9095 22 7 -2.3446 2.8652 5.8360 23 14 -0.1874 3.5657 7.4269 24 1 0.9387 2.6268 7.1915 25 1 0.3491 4.9219 7.7064 26 1 -0.9855 3.0999 8.5895 27 6 2.1833 3.5285 1.2520 28 1 -0.3634 -1.0237 0.0905 29 1 -0.3633 0.5901 0.8414 30 1 -0.3633 0.4334 -0.9317 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4217 2.0885 -1.1685 34 1 1.8415 3.1605 -1.1087 35 1 1.7578 2.0928 -3.3037 36 1 3.1344 1.4234 -2.3953 37 1 1.6317 0.4829 -2.5551 38 1 1.8947 0.6238 2.8811 39 1 3.4428 1.1560 2.1502 40 1 3.4821 2.6522 3.9442 41 1 1.7167 2.5437 4.1893 42 1 -0.0804 7.4657 2.7606 43 1 0.1695 6.0767 1.6761 44 1 -1.1784 6.0669 2.8385 45 1 0.5597 7.3796 5.8575 46 1 -1.0134 7.2204 5.0399 47 1 -0.7594 6.4716 6.6346 48 1 -2.5663 2.2685 6.5679 49 1 1.4593 4.1868 0.7718 50 1 3.1467 3.5921 0.7462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330409069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:52 Heat of formation + Delta-G solvation = -84.590231 kcal Electronic energy + Delta-G solvation = -29722.309016 eV Core-core repulsion = 25910.775698 eV Total energy + Delta-G solvation = -3811.533317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46482 -38.46720 -38.03607 -37.72223 -37.00269 -34.50556 -32.45015 -31.71939 -31.68265 -30.38617 -28.09659 -27.32197 -27.03253 -24.87043 -23.55101 -22.52418 -22.22942 -20.29182 -19.98633 -19.25377 -18.72063 -18.47915 -17.65713 -17.19054 -16.67152 -16.31310 -16.04556 -15.46497 -15.10642 -14.95555 -14.70030 -14.53492 -14.52328 -14.37463 -14.15612 -13.97571 -13.81529 -13.60805 -13.50148 -13.35122 -13.21755 -13.13453 -13.03662 -12.97948 -12.76698 -12.63265 -12.50525 -12.41877 -12.21468 -12.11758 -12.06280 -11.85280 -11.75751 -11.60141 -11.35433 -11.33034 -10.73439 -10.06712 -9.73867 -9.25423 -8.30722 -6.33016 -0.46945 1.30596 1.37084 1.45145 1.84501 2.31259 2.45984 2.88184 3.05510 3.15897 3.48785 3.75475 3.93201 4.04486 4.15236 4.23499 4.28822 4.34582 4.40208 4.41453 4.45913 4.54999 4.60838 4.65568 4.71398 4.73407 4.77568 4.79803 4.81486 4.85537 4.90610 4.96729 5.03254 5.06833 5.08070 5.16336 5.17273 5.21564 5.27696 5.30584 5.37573 5.46572 5.49241 5.52674 5.90592 6.12734 6.16867 6.33694 6.71613 7.31823 8.84253 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005000 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.154361 B = 5598.985975 C = 6619.865629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 N -0.523 5.523 4 C 0.035 3.965 5 C -0.140 4.140 6 C 0.074 3.926 7 H 0.049 0.951 8 C -0.104 4.104 9 C 0.115 3.885 10 N -1.017 6.017 11 S 2.803 3.197 12 O -0.996 6.996 13 O -1.007 7.007 14 N -0.992 5.992 15 C 0.101 3.899 16 C 0.238 3.762 17 H 0.041 0.959 18 C -0.147 4.147 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.038 3.962 22 N -0.931 5.931 23 Si 0.896 3.104 24 H -0.266 1.266 25 H -0.247 1.247 26 H -0.281 1.281 27 C 0.132 3.868 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.267 0.733 49 H 0.070 0.930 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -4.218 -13.174 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.078 4.078 3 N -0.247 5.247 4 C -0.092 4.092 5 C -0.198 4.198 6 C -0.036 4.036 7 H 0.067 0.933 8 C -0.143 4.143 9 C -0.011 4.011 10 N -0.858 5.858 11 S 2.815 3.185 12 O -0.980 6.980 13 O -0.991 6.991 14 N -0.833 5.833 15 C -0.044 4.044 16 C 0.133 3.867 17 H 0.059 0.941 18 C -0.207 4.207 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.162 4.162 22 N -0.571 5.571 23 Si 0.720 3.280 24 H -0.191 1.191 25 H -0.171 1.171 26 H -0.207 1.207 27 C 0.006 3.994 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.067 -3.666 -12.967 16.242 hybrid contribution -1.373 -0.376 1.144 1.826 sum 7.693 -4.042 -11.823 14.674 Atomic orbital electron populations 1.22389 0.98530 1.02612 1.01429 1.22235 0.92592 0.89276 1.03705 1.62385 1.58880 1.02691 1.00786 1.22276 0.97789 0.98372 0.90812 1.21729 1.01809 1.00854 0.95389 1.22704 0.97537 0.92719 0.90672 0.93283 1.22570 1.02385 0.96031 0.93326 1.21793 1.01119 0.83433 0.94714 1.58860 1.88223 1.22533 1.16157 1.01055 0.73284 0.72260 0.71938 1.93531 1.82972 1.63892 1.57598 1.93519 1.72625 1.87152 1.45845 1.57731 1.29911 1.74379 1.21304 1.21387 0.96109 0.97450 0.89494 1.18879 0.93967 0.94167 0.79662 0.94145 1.22198 1.00398 0.97622 1.00438 1.21261 1.13488 1.18341 1.01811 0.92564 1.25445 0.95648 0.94883 1.00244 1.69982 1.26451 1.26629 1.34012 0.86542 0.80049 0.80526 0.80874 1.19109 1.17051 1.20683 1.22034 1.01596 0.95728 0.79992 0.91222 0.94371 0.92134 0.88771 0.90383 0.94644 0.90860 0.91392 0.91906 0.92261 0.89782 0.88095 0.90679 0.93280 0.91888 0.91240 0.90975 0.93777 0.91737 0.92959 0.92409 0.91142 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 9.18 71.98 0.66 -3.06 16 2 C 0.05 0.88 5.61 86.30 0.48 1.36 16 3 N -0.52 -10.71 4.63 -862.88 -4.00 -14.70 16 4 C 0.04 0.65 5.15 86.31 0.44 1.10 16 5 C -0.14 -2.01 9.60 71.98 0.69 -1.32 16 6 C 0.07 1.88 2.48 46.30 0.11 1.99 16 7 H 0.05 1.46 6.31 -2.38 -0.02 1.45 16 8 C -0.10 -2.59 5.62 31.78 0.18 -2.41 16 9 C 0.12 3.69 6.99 86.73 0.61 4.29 16 10 N -1.02 -34.37 3.75 -506.43 -1.90 -36.27 16 11 S 2.80 109.71 6.30 -56.49 -0.36 109.35 16 12 O -1.00 -39.52 16.80 -128.00 -2.15 -41.67 16 13 O -1.01 -44.84 16.28 -128.00 -2.08 -46.93 16 14 N -0.99 -39.70 3.12 -520.46 -1.62 -41.33 16 15 C 0.10 3.42 9.22 127.77 1.18 4.60 16 16 C 0.24 10.82 2.18 44.25 0.10 10.92 16 17 H 0.04 1.95 4.62 -2.39 -0.01 1.94 16 18 C -0.15 -6.01 8.91 71.98 0.64 -5.37 16 19 C -0.51 -26.30 8.69 25.60 0.22 -26.08 16 20 H 0.06 3.15 6.88 -2.91 -0.02 3.13 16 21 C 0.04 2.03 5.47 84.66 0.46 2.49 16 22 N -0.93 -53.70 13.96 21.45 0.30 -53.40 16 23 Si 0.90 41.80 26.24 68.60 1.80 43.60 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.25 -11.02 6.21 99.48 0.62 -10.41 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C 0.13 3.67 5.12 86.85 0.44 4.12 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 0.94 6.28 -2.39 -0.01 0.92 16 30 H 0.06 1.12 6.59 -2.39 -0.02 1.10 16 31 H 0.09 1.37 6.62 -2.39 -0.02 1.36 16 32 H 0.08 1.37 7.16 -2.39 -0.02 1.35 16 33 H 0.04 0.70 6.20 -2.38 -0.01 0.68 16 34 H 0.07 1.41 6.61 -2.39 -0.02 1.39 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 0.78 6.83 -2.39 -0.02 0.76 16 38 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 39 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 44 H 0.07 2.58 6.62 -2.39 -0.02 2.56 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.44 7.51 -2.39 -0.02 2.42 16 47 H 0.05 2.17 6.86 -2.39 -0.02 2.15 16 48 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.07 1.90 7.87 -2.39 -0.02 1.88 16 50 H 0.09 2.19 8.13 -2.39 -0.02 2.18 16 Total: -1.00 -64.08 386.05 -2.96 -67.04 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.82 Total: 21.67 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 6.23 Total: -7.37 kcal Atomic # 7 Polarization: -138.48 SS G_CDS: -7.22 Total: -145.70 kcal Atomic # 8 Polarization: -84.37 SS G_CDS: -4.23 Total: -88.60 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.80 Total: 43.60 kcal Atomic # 16 Polarization: 109.71 SS G_CDS: -0.36 Total: 109.35 kcal Total: -64.08 -2.96 -67.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330409069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.547 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds