Wall clock time and date at job start Tue Mar 31 2020 17:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46848 * 2 1 4 4 C 1.52997 * 109.47320 * 240.00254 * 2 1 3 5 5 N 1.46498 * 109.47391 * 64.99612 * 4 2 1 6 6 S 1.65594 * 120.00220 * 164.99972 * 5 4 2 7 7 O 1.42098 * 106.40453 * 311.46134 * 6 5 4 8 8 O 1.42100 * 106.40419 * 178.54319 * 6 5 4 9 9 N 1.65605 * 107.21790 * 65.00216 * 6 5 4 10 10 C 1.46500 * 119.99838 * 269.99687 * 9 6 5 11 11 C 1.46498 * 120.00039 * 90.00176 * 9 6 5 12 12 H 1.09007 * 109.47085 * 359.97438 * 11 9 6 13 13 C 1.52998 * 109.47234 * 119.99952 * 11 9 6 14 14 C 1.50700 * 109.47157 * 240.00388 * 11 9 6 15 15 H 1.08001 * 119.99886 * 354.33289 * 14 11 9 16 16 C 1.37874 * 120.00258 * 174.34577 * 14 11 9 17 17 N 1.31515 * 119.99806 * 0.49726 * 16 14 11 18 18 Si 1.86798 * 120.00290 * 180.77476 * 16 14 11 19 19 H 1.48498 * 109.47007 * 264.73045 * 18 16 14 20 20 H 1.48507 * 109.46809 * 24.72821 * 18 16 14 21 21 H 1.48498 * 109.47382 * 144.72610 * 18 16 14 22 22 C 1.52998 * 109.46915 * 119.99772 * 2 1 3 23 23 N 1.46904 * 109.46569 * 182.73740 * 22 2 1 24 24 C 1.48528 * 111.00239 * 59.03890 * 23 22 2 25 25 C 1.54937 * 103.22876 * 159.71898 * 24 23 22 26 26 C 1.54598 * 102.92017 * 322.58228 * 25 24 23 27 27 C 1.47910 * 110.99581 * 176.43444 * 23 22 2 28 28 H 1.09002 * 109.46929 * 184.68244 * 1 2 3 29 29 H 1.08995 * 109.47116 * 304.68544 * 1 2 3 30 30 H 1.09001 * 109.47005 * 64.69056 * 1 2 3 31 31 H 1.09002 * 109.47149 * 304.99942 * 4 2 1 32 32 H 1.08996 * 109.47321 * 184.99598 * 4 2 1 33 33 H 0.97000 * 119.99690 * 345.00249 * 5 4 2 34 34 H 1.08992 * 109.47207 * 270.00051 * 10 9 6 35 35 H 1.08999 * 109.46923 * 30.00649 * 10 9 6 36 36 H 1.09003 * 109.46448 * 149.99685 * 10 9 6 37 37 H 1.09001 * 109.47019 * 56.92830 * 13 11 9 38 38 H 1.08994 * 109.47016 * 176.93213 * 13 11 9 39 39 H 1.09006 * 109.47172 * 296.92947 * 13 11 9 40 40 H 0.97003 * 119.99887 * 180.27944 * 17 16 14 41 41 H 1.08996 * 109.47755 * 302.73522 * 22 2 1 42 42 H 1.09005 * 109.46940 * 62.74301 * 22 2 1 43 43 H 1.09001 * 110.66752 * 278.15249 * 24 23 22 44 44 H 1.09004 * 110.66829 * 41.27986 * 24 23 22 45 45 H 1.09004 * 110.72442 * 204.23106 * 25 24 23 46 46 H 1.08992 * 110.72578 * 80.94271 * 25 24 23 47 47 H 1.09002 * 110.30957 * 263.04256 * 26 25 24 48 48 H 1.08995 * 110.30842 * 140.87338 * 26 25 24 49 49 H 1.08994 * 109.91674 * 333.50690 * 27 23 22 50 50 H 1.08997 * 109.91797 * 94.60724 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 16 2.3700 -0.2906 -3.8988 7 8 3.7702 -0.3196 -3.6588 8 8 1.7620 0.5745 -4.8482 9 7 1.9365 -1.8310 -4.3249 10 6 2.7642 -2.9662 -3.9097 11 6 0.7254 -2.0585 -5.1172 12 1 0.2449 -1.1032 -5.3288 13 6 1.0980 -2.7451 -6.4327 14 6 -0.2235 -2.9369 -4.3432 15 1 0.0840 -3.3651 -3.4007 16 6 -1.4843 -3.1942 -4.8385 17 7 -1.8552 -2.6809 -5.9912 18 14 -2.6682 -4.2653 -3.8689 19 1 -2.5830 -5.6650 -4.3576 20 1 -2.3093 -4.2212 -2.4285 21 1 -4.0533 -3.7613 -4.0495 22 6 2.0400 -0.7212 1.2493 23 7 3.5075 -0.6641 1.2827 24 6 3.9855 0.7421 1.2930 25 6 5.4268 0.6227 1.8489 26 6 5.2945 -0.4871 2.9170 27 6 4.0337 -1.2779 2.5213 28 1 -0.3633 -1.0243 0.0839 29 1 -0.3633 0.5848 0.8450 30 1 -0.3633 0.4393 -0.9290 31 1 1.6055 -1.7197 -1.2952 32 1 3.1264 -0.7993 -1.2056 33 1 0.9756 0.7273 -2.3792 34 1 3.5189 -3.1633 -4.6710 35 1 3.2539 -2.7323 -2.9645 36 1 2.1353 -3.8477 -3.7846 37 1 1.6268 -3.6743 -6.2205 38 1 0.1920 -2.9635 -6.9979 39 1 1.7408 -2.0865 -7.0170 40 1 -2.7437 -2.8586 -6.3377 41 1 1.6372 -0.2365 2.1386 42 1 1.7173 -1.7621 1.2250 43 1 3.9954 1.1525 0.2832 44 1 3.3685 1.3534 1.9517 45 1 5.7434 1.5608 2.3047 46 1 6.1195 0.3212 1.0632 47 1 5.1700 -0.0470 3.9064 48 1 6.1697 -1.1365 2.8983 49 1 3.2890 -1.2106 3.3144 50 1 4.2885 -2.3219 2.3392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330410318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:02 Heat of formation + Delta-G solvation = -82.568116 kcal Electronic energy + Delta-G solvation = -28883.764596 eV Core-core repulsion = 25072.318964 eV Total energy + Delta-G solvation = -3811.445632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.36506 -36.75511 -36.42280 -36.05073 -35.14608 -33.04182 -32.54231 -30.68213 -29.08706 -29.05622 -26.11701 -25.45470 -25.13827 -24.83434 -21.74164 -20.98765 -20.75382 -19.83637 -18.69227 -17.13125 -16.68788 -16.45940 -16.25159 -16.17567 -15.82232 -15.07930 -14.51638 -14.29259 -13.97596 -13.77962 -13.46387 -13.36411 -13.12219 -13.00369 -12.70765 -12.58034 -12.29192 -11.93586 -11.78587 -11.72857 -11.61643 -11.55991 -11.43293 -11.32917 -11.30793 -11.16560 -11.06305 -10.96527 -10.82068 -10.80990 -10.65848 -10.59460 -10.41034 -10.25148 -10.02581 -9.28293 -8.97260 -8.54903 -8.47826 -7.90452 -6.08233 -4.15487 1.37914 3.24523 3.32356 3.33768 3.62002 3.80831 4.25294 4.36833 4.43245 4.50084 4.70746 4.78159 4.92406 5.06838 5.09558 5.17486 5.23530 5.29575 5.36114 5.49467 5.52965 5.58618 5.62394 5.64175 5.66195 5.77260 5.80343 5.87767 5.92728 5.99136 6.10358 6.12886 6.23741 6.32976 6.37248 6.47790 6.70010 6.73522 6.88127 6.88747 6.89661 7.14508 7.34391 7.57889 7.65324 7.81513 8.03468 8.28151 8.88206 9.50350 10.98044 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.003865 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.565473 B = 7243.294810 C = 8280.155100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.132 3.868 5 N -1.129 6.129 6 S 2.784 3.216 7 O -0.999 6.999 8 O -0.986 6.986 9 N -0.990 5.990 10 C 0.106 3.894 11 C 0.268 3.732 12 H 0.062 0.938 13 C -0.141 4.141 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.274 1.274 21 H -0.286 1.286 22 C 0.053 3.947 23 N -0.515 5.515 24 C 0.031 3.969 25 C -0.125 4.125 26 C -0.131 4.131 27 C 0.035 3.965 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.409 0.591 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 4.178 16.726 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.094 0.906 4 C 0.005 3.995 5 N -0.888 5.888 6 S 2.792 3.208 7 O -0.982 6.982 8 O -0.970 6.970 9 N -0.833 5.833 10 C -0.041 4.041 11 C 0.165 3.835 12 H 0.079 0.921 13 C -0.201 4.201 14 C -0.562 4.562 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.208 1.208 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.076 4.076 23 N -0.240 5.240 24 C -0.096 4.096 25 C -0.163 4.163 26 C -0.169 4.169 27 C -0.093 4.093 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.242 0.758 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.840 4.342 15.631 18.974 hybrid contribution -1.751 -0.259 1.482 2.308 sum 8.089 4.082 17.113 19.364 Atomic orbital electron populations 1.21832 0.94258 1.02634 1.01979 1.21362 0.96174 0.99919 0.94018 0.90620 1.21188 1.00572 0.94470 0.83222 1.56038 1.57479 1.50097 1.25214 1.01731 0.73115 0.73319 0.72592 1.93537 1.31368 1.87235 1.86051 1.93585 1.78254 1.65521 1.59627 1.57696 1.37103 1.21950 1.66543 1.21200 0.93902 0.91159 0.97821 1.18705 0.79265 0.97953 0.87612 0.92078 1.22013 1.00989 0.98346 0.98764 1.21380 0.97903 1.30517 1.06424 0.91895 1.24932 0.97967 0.95983 0.95011 1.69924 1.19916 1.44210 1.18481 0.86551 0.80405 0.80522 0.80272 1.20775 1.19914 1.21234 1.22343 0.87261 1.01435 0.96538 1.64787 1.09260 1.14280 1.35625 1.23282 0.95043 0.89897 1.01415 1.22490 0.97067 0.98324 0.98430 1.22390 0.98151 0.97703 0.98646 1.22854 0.95896 0.99729 0.90779 0.91962 0.93002 0.91660 0.91800 0.89627 0.75757 0.94001 0.93056 0.90381 0.94838 0.89795 0.96702 0.92702 0.94441 0.90085 0.89556 0.93914 0.91267 0.90451 0.91807 0.91016 0.93994 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.12 37.16 0.34 -1.33 16 2 C -0.09 -1.07 2.29 -90.62 -0.21 -1.28 16 3 H 0.08 0.83 6.77 -51.93 -0.35 0.48 16 4 C 0.13 1.87 5.57 -4.04 -0.02 1.85 16 5 N -1.13 -18.19 5.91 -10.62 -0.06 -18.26 16 6 S 2.78 55.68 6.09 -107.50 -0.66 55.03 16 7 O -1.00 -20.92 16.68 -57.17 -0.95 -21.87 16 8 O -0.99 -22.96 16.70 -57.17 -0.95 -23.91 16 9 N -0.99 -20.75 3.12 -115.85 -0.36 -21.11 16 10 C 0.11 1.91 9.21 59.85 0.55 2.46 16 11 C 0.27 6.57 2.52 -69.08 -0.17 6.39 16 12 H 0.06 1.68 6.91 -51.92 -0.36 1.32 16 13 C -0.14 -3.38 9.10 37.16 0.34 -3.04 16 14 C -0.52 -13.34 8.02 -34.44 -0.28 -13.61 16 15 H 0.06 1.56 7.13 -52.49 -0.37 1.18 16 16 C 0.06 1.67 5.32 -17.82 -0.09 1.58 16 17 N -0.89 -24.52 11.71 55.43 0.65 -23.87 16 18 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.05 0.54 4.23 -3.82 -0.02 0.52 16 23 N -0.52 -5.44 4.62 -230.45 -1.06 -6.50 16 24 C 0.03 0.31 5.37 -1.90 -0.01 0.30 16 25 C -0.13 -1.06 7.06 -24.87 -0.18 -1.23 16 26 C -0.13 -1.01 6.93 -25.37 -0.18 -1.18 16 27 C 0.04 0.31 6.70 -2.75 -0.02 0.29 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.79 6.79 -51.93 -0.35 0.43 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.28 7.15 -51.93 -0.37 0.90 16 33 H 0.41 5.99 7.38 -34.47 -0.25 5.73 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 36 H 0.08 1.42 6.92 -51.93 -0.36 1.06 16 37 H 0.03 0.74 7.57 -51.93 -0.39 0.34 16 38 H 0.08 2.17 6.45 -51.93 -0.34 1.84 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.04 0.35 7.98 -51.93 -0.41 -0.07 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.93 7.59 -51.93 -0.39 0.54 16 44 H 0.04 0.39 8.01 -51.93 -0.42 -0.03 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.04 0.34 7.68 -51.93 -0.40 -0.05 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -31.06 397.15 -11.35 -42.40 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.96 Total: 5.11 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 0.06 Total: -8.29 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.84 Total: -69.74 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.91 Total: -45.79 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 55.68 SS G_CDS: -0.66 Total: 55.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.06 -11.35 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330410318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.163 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds