Wall clock time and date at job start Tue Mar 31 2020 17:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46848 * 2 1 4 4 C 1.52997 * 109.47320 * 240.00254 * 2 1 3 5 5 N 1.46498 * 109.47391 * 64.99612 * 4 2 1 6 6 S 1.65594 * 120.00220 * 164.99972 * 5 4 2 7 7 O 1.42098 * 106.40453 * 311.46134 * 6 5 4 8 8 O 1.42100 * 106.40419 * 178.54319 * 6 5 4 9 9 N 1.65605 * 107.21790 * 65.00216 * 6 5 4 10 10 C 1.46500 * 119.99838 * 269.99687 * 9 6 5 11 11 C 1.46498 * 120.00039 * 90.00176 * 9 6 5 12 12 H 1.09007 * 109.47085 * 359.97438 * 11 9 6 13 13 C 1.52998 * 109.47234 * 119.99952 * 11 9 6 14 14 C 1.50700 * 109.47157 * 240.00388 * 11 9 6 15 15 H 1.08001 * 119.99886 * 354.33289 * 14 11 9 16 16 C 1.37874 * 120.00258 * 174.34577 * 14 11 9 17 17 N 1.31515 * 119.99806 * 0.49726 * 16 14 11 18 18 Si 1.86798 * 120.00290 * 180.77476 * 16 14 11 19 19 H 1.48498 * 109.47007 * 264.73045 * 18 16 14 20 20 H 1.48507 * 109.46809 * 24.72821 * 18 16 14 21 21 H 1.48498 * 109.47382 * 144.72610 * 18 16 14 22 22 C 1.52998 * 109.46915 * 119.99772 * 2 1 3 23 23 N 1.46904 * 109.46569 * 182.73740 * 22 2 1 24 24 C 1.48528 * 111.00239 * 59.03890 * 23 22 2 25 25 C 1.54937 * 103.22876 * 159.71898 * 24 23 22 26 26 C 1.54598 * 102.92017 * 322.58228 * 25 24 23 27 27 C 1.47910 * 110.99581 * 176.43444 * 23 22 2 28 28 H 1.09002 * 109.46929 * 184.68244 * 1 2 3 29 29 H 1.08995 * 109.47116 * 304.68544 * 1 2 3 30 30 H 1.09001 * 109.47005 * 64.69056 * 1 2 3 31 31 H 1.09002 * 109.47149 * 304.99942 * 4 2 1 32 32 H 1.08996 * 109.47321 * 184.99598 * 4 2 1 33 33 H 0.97000 * 119.99690 * 345.00249 * 5 4 2 34 34 H 1.08992 * 109.47207 * 270.00051 * 10 9 6 35 35 H 1.08999 * 109.46923 * 30.00649 * 10 9 6 36 36 H 1.09003 * 109.46448 * 149.99685 * 10 9 6 37 37 H 1.09001 * 109.47019 * 56.92830 * 13 11 9 38 38 H 1.08994 * 109.47016 * 176.93213 * 13 11 9 39 39 H 1.09006 * 109.47172 * 296.92947 * 13 11 9 40 40 H 0.97003 * 119.99887 * 180.27944 * 17 16 14 41 41 H 1.08996 * 109.47755 * 302.73522 * 22 2 1 42 42 H 1.09005 * 109.46940 * 62.74301 * 22 2 1 43 43 H 1.09001 * 110.66752 * 278.15249 * 24 23 22 44 44 H 1.09004 * 110.66829 * 41.27986 * 24 23 22 45 45 H 1.09004 * 110.72442 * 204.23106 * 25 24 23 46 46 H 1.08992 * 110.72578 * 80.94271 * 25 24 23 47 47 H 1.09002 * 110.30957 * 263.04256 * 26 25 24 48 48 H 1.08995 * 110.30842 * 140.87338 * 26 25 24 49 49 H 1.08994 * 109.91674 * 333.50690 * 27 23 22 50 50 H 1.08997 * 109.91797 * 94.60724 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 16 2.3700 -0.2906 -3.8988 7 8 3.7702 -0.3196 -3.6588 8 8 1.7620 0.5745 -4.8482 9 7 1.9365 -1.8310 -4.3249 10 6 2.7642 -2.9662 -3.9097 11 6 0.7254 -2.0585 -5.1172 12 1 0.2449 -1.1032 -5.3288 13 6 1.0980 -2.7451 -6.4327 14 6 -0.2235 -2.9369 -4.3432 15 1 0.0840 -3.3651 -3.4007 16 6 -1.4843 -3.1942 -4.8385 17 7 -1.8552 -2.6809 -5.9912 18 14 -2.6682 -4.2653 -3.8689 19 1 -2.5830 -5.6650 -4.3576 20 1 -2.3093 -4.2212 -2.4285 21 1 -4.0533 -3.7613 -4.0495 22 6 2.0400 -0.7212 1.2493 23 7 3.5075 -0.6641 1.2827 24 6 3.9855 0.7421 1.2930 25 6 5.4268 0.6227 1.8489 26 6 5.2945 -0.4871 2.9170 27 6 4.0337 -1.2779 2.5213 28 1 -0.3633 -1.0243 0.0839 29 1 -0.3633 0.5848 0.8450 30 1 -0.3633 0.4393 -0.9290 31 1 1.6055 -1.7197 -1.2952 32 1 3.1264 -0.7993 -1.2056 33 1 0.9756 0.7273 -2.3792 34 1 3.5189 -3.1633 -4.6710 35 1 3.2539 -2.7323 -2.9645 36 1 2.1353 -3.8477 -3.7846 37 1 1.6268 -3.6743 -6.2205 38 1 0.1920 -2.9635 -6.9979 39 1 1.7408 -2.0865 -7.0170 40 1 -2.7437 -2.8586 -6.3377 41 1 1.6372 -0.2365 2.1386 42 1 1.7173 -1.7621 1.2250 43 1 3.9954 1.1525 0.2832 44 1 3.3685 1.3534 1.9517 45 1 5.7434 1.5608 2.3047 46 1 6.1195 0.3212 1.0632 47 1 5.1700 -0.0470 3.9064 48 1 6.1697 -1.1365 2.8983 49 1 3.2890 -1.2106 3.3144 50 1 4.2885 -2.3219 2.3392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330410318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:01 Heat of formation + Delta-G solvation = -104.450595 kcal Electronic energy + Delta-G solvation = -28884.713492 eV Core-core repulsion = 25072.318964 eV Total energy + Delta-G solvation = -3812.394527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.13347 -38.31553 -37.88441 -37.54136 -36.86609 -34.46630 -34.09596 -31.52921 -30.95231 -29.73514 -27.25602 -27.11996 -26.92728 -25.78586 -22.62829 -22.51093 -21.64540 -20.81479 -20.20865 -18.75778 -18.30232 -18.22186 -17.53082 -16.96617 -16.90842 -16.66152 -16.03168 -15.34562 -15.16265 -14.94871 -14.83942 -14.59094 -14.41682 -14.32303 -13.89236 -13.70320 -13.48098 -13.41877 -13.20144 -13.17366 -13.11583 -12.95987 -12.87041 -12.75461 -12.62453 -12.59338 -12.24146 -12.21934 -12.15751 -12.04639 -11.95950 -11.81808 -11.66786 -11.51469 -11.38094 -11.15055 -10.49419 -10.34236 -9.63907 -9.28884 -8.07836 -6.21534 -0.23149 1.46208 1.48022 1.57359 2.06271 2.47567 2.67168 3.07617 3.22203 3.46684 3.73838 3.81785 3.85391 4.06610 4.10365 4.15921 4.17988 4.40005 4.55196 4.56552 4.63982 4.70476 4.72988 4.76971 4.79719 4.81077 4.86027 4.96067 4.96971 4.99609 5.01491 5.08918 5.10932 5.12938 5.15717 5.25395 5.27137 5.34713 5.36433 5.43777 5.61252 5.67608 5.86853 6.01571 6.06065 6.14924 6.22794 6.30878 6.88518 7.47959 8.98278 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.003865 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.565473 B = 7243.294810 C = 8280.155100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.081 0.919 4 C 0.130 3.870 5 N -1.118 6.118 6 S 2.798 3.202 7 O -1.007 7.007 8 O -1.022 7.022 9 N -0.996 5.996 10 C 0.100 3.900 11 C 0.273 3.727 12 H 0.026 0.974 13 C -0.136 4.136 14 C -0.525 4.525 15 H 0.071 0.929 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.957 3.043 19 H -0.279 1.279 20 H -0.263 1.263 21 H -0.290 1.290 22 C 0.058 3.942 23 N -0.535 5.535 24 C 0.029 3.971 25 C -0.125 4.125 26 C -0.127 4.127 27 C 0.033 3.967 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 3.642 19.326 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.099 0.901 4 C 0.004 3.996 5 N -0.881 5.881 6 S 2.807 3.193 7 O -0.990 6.990 8 O -1.006 7.006 9 N -0.838 5.838 10 C -0.046 4.046 11 C 0.169 3.831 12 H 0.044 0.956 13 C -0.196 4.196 14 C -0.564 4.564 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.783 3.217 19 H -0.205 1.205 20 H -0.187 1.187 21 H -0.216 1.216 22 C -0.071 4.071 23 N -0.259 5.259 24 C -0.098 4.098 25 C -0.163 4.163 26 C -0.165 4.165 27 C -0.094 4.094 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.069 0.931 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.189 3.797 18.244 21.238 hybrid contribution -1.787 -0.061 0.697 1.919 sum 8.402 3.736 18.941 21.055 Atomic orbital electron populations 1.21821 0.94003 1.02518 1.02234 1.21313 0.96263 1.00016 0.93121 0.90054 1.21330 1.00305 0.94442 0.83499 1.55731 1.57464 1.50338 1.24578 1.01134 0.72787 0.72638 0.72758 1.93522 1.31979 1.87237 1.86300 1.93531 1.78825 1.66614 1.61663 1.57589 1.36358 1.23080 1.66778 1.21389 0.93775 0.90226 0.99163 1.18384 0.80353 0.96065 0.88326 0.95621 1.21914 1.00134 0.99102 0.98436 1.21623 0.98120 1.30125 1.06563 0.91112 1.25696 0.99669 0.97234 0.95811 1.70061 1.20260 1.45659 1.20044 0.85555 0.77961 0.78700 0.79447 1.20458 1.18674 1.21571 1.22280 0.87336 1.01288 0.96186 1.64758 1.09411 1.14850 1.36892 1.23280 0.96034 0.89686 1.00846 1.22493 0.96022 0.99377 0.98414 1.22386 0.97788 0.97345 0.98959 1.22897 0.96569 0.99624 0.90346 0.92564 0.90942 0.92906 0.92234 0.90198 0.74783 0.93084 0.90929 0.90382 0.93354 0.92036 0.96215 0.92836 0.92969 0.90221 0.91099 0.92941 0.89829 0.91675 0.90431 0.90605 0.93128 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.12 71.98 0.66 -2.39 16 2 C -0.09 -1.82 2.29 -10.79 -0.02 -1.84 16 3 H 0.08 1.63 6.77 -2.39 -0.02 1.62 16 4 C 0.13 3.54 5.57 86.38 0.48 4.02 16 5 N -1.12 -35.56 5.91 -187.50 -1.11 -36.66 16 6 S 2.80 111.93 6.09 -56.49 -0.34 111.58 16 7 O -1.01 -41.60 16.68 -128.00 -2.14 -43.74 16 8 O -1.02 -48.58 16.70 -128.00 -2.14 -50.72 16 9 N -1.00 -41.44 3.12 -520.45 -1.62 -43.07 16 10 C 0.10 3.48 9.21 127.77 1.18 4.66 16 11 C 0.27 13.53 2.52 44.24 0.11 13.64 16 12 H 0.03 1.46 6.91 -2.38 -0.02 1.45 16 13 C -0.14 -6.57 9.10 71.98 0.66 -5.92 16 14 C -0.52 -26.59 8.02 25.60 0.21 -26.39 16 15 H 0.07 3.41 7.13 -2.91 -0.02 3.39 16 16 C 0.02 0.80 5.32 84.65 0.45 1.25 16 17 N -0.92 -51.61 11.71 21.45 0.25 -51.35 16 18 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.06 1.05 4.23 86.30 0.37 1.42 16 23 N -0.53 -10.32 4.62 -883.00 -4.08 -14.40 16 24 C 0.03 0.52 5.37 86.65 0.47 0.98 16 25 C -0.12 -1.90 7.06 31.80 0.22 -1.68 16 26 C -0.13 -1.66 6.93 31.47 0.22 -1.45 16 27 C 0.03 0.52 6.70 86.45 0.58 1.10 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.21 6.79 -2.39 -0.02 1.20 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.30 7.15 -2.39 -0.02 2.28 16 33 H 0.42 12.08 7.38 -96.75 -0.71 11.37 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 36 H 0.08 2.72 6.92 -2.39 -0.02 2.70 16 37 H 0.05 2.12 7.57 -2.39 -0.02 2.10 16 38 H 0.06 3.24 6.45 -2.39 -0.02 3.23 16 39 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.05 0.81 7.98 -2.39 -0.02 0.80 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.07 1.46 7.59 -2.39 -0.02 1.45 16 44 H 0.05 0.82 8.01 -2.39 -0.02 0.81 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 0.70 7.68 -2.39 -0.02 0.68 16 50 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.72 397.15 -3.39 -69.11 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.19 Total: 28.61 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.56 Total: -12.59 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -6.56 Total: -145.48 kcal Atomic # 8 Polarization: -90.18 SS G_CDS: -4.27 Total: -94.46 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 111.93 SS G_CDS: -0.34 Total: 111.58 kcal Total: -65.72 -3.39 -69.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330410318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.343 kcal (2) G-P(sol) polarization free energy of solvation -65.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds