Wall clock time and date at job start Tue Mar 31 2020 17:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46882 * 2 1 4 4 C 1.50707 * 109.46729 * 240.00978 * 2 1 3 5 5 H 1.08003 * 119.99742 * 245.45359 * 4 2 1 6 6 C 1.37877 * 120.00257 * 65.45740 * 4 2 1 7 7 N 1.31513 * 120.00000 * 9.59660 * 6 4 2 8 8 Si 1.86796 * 119.99758 * 189.59730 * 6 4 2 9 9 H 1.48501 * 109.47138 * 84.99473 * 8 6 4 10 10 H 1.48501 * 109.46959 * 204.99102 * 8 6 4 11 11 H 1.48492 * 109.47448 * 324.99482 * 8 6 4 12 12 N 1.46494 * 109.47383 * 120.00758 * 2 1 3 13 13 C 1.46503 * 119.99840 * 60.00073 * 12 2 1 14 14 S 1.65597 * 119.99918 * 240.00185 * 12 2 1 15 15 O 1.42101 * 106.40213 * 156.46079 * 14 12 2 16 16 O 1.42094 * 106.40587 * 23.53909 * 14 12 2 17 17 N 1.65599 * 107.21776 * 269.99717 * 14 12 2 18 18 C 1.46497 * 119.99980 * 64.99770 * 17 14 12 19 19 C 1.53007 * 109.47278 * 165.00099 * 18 17 14 20 20 N 1.46900 * 109.47108 * 180.02562 * 19 18 17 21 21 C 1.46896 * 110.99994 * 66.04622 * 20 19 18 22 22 C 1.46901 * 110.99416 * 190.00112 * 20 19 18 23 23 C 1.54964 * 110.92694 * 66.54041 * 22 20 19 24 24 C 1.54269 * 104.16117 * 156.29097 * 23 22 20 25 25 C 1.53871 * 106.63854 * 336.44488 * 24 23 22 26 26 C 1.54265 * 106.60095 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46696 * 183.28368 * 1 2 3 28 28 H 1.08993 * 109.46947 * 303.28460 * 1 2 3 29 29 H 1.08999 * 109.46891 * 63.29016 * 1 2 3 30 30 H 0.97001 * 119.99693 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47275 * 269.99898 * 13 12 2 32 32 H 1.08998 * 109.47348 * 29.99675 * 13 12 2 33 33 H 1.09003 * 109.46978 * 150.00572 * 13 12 2 34 34 H 0.97007 * 120.00207 * 245.00450 * 17 14 12 35 35 H 1.09004 * 109.46917 * 45.00635 * 18 17 14 36 36 H 1.08999 * 109.47345 * 285.00277 * 18 17 14 37 37 H 1.08998 * 109.46902 * 59.99982 * 19 18 17 38 38 H 1.08999 * 109.46691 * 300.00720 * 19 18 17 39 39 H 1.09005 * 109.46978 * 183.95333 * 21 20 19 40 40 H 1.08994 * 109.47350 * 303.95057 * 21 20 19 41 41 H 1.09000 * 109.47376 * 63.95538 * 21 20 19 42 42 H 1.08998 * 110.67082 * 303.22860 * 22 20 19 43 43 H 1.09006 * 110.47334 * 37.63905 * 23 22 20 44 44 H 1.09001 * 110.52652 * 274.97452 * 23 22 20 45 45 H 1.09000 * 110.02765 * 217.13548 * 24 23 22 46 46 H 1.08999 * 110.02655 * 95.75731 * 24 23 22 47 47 H 1.08999 * 110.03296 * 119.26187 * 25 24 23 48 48 H 1.09006 * 110.03392 * 240.64068 * 25 24 23 49 49 H 1.09005 * 110.48393 * 142.29116 * 26 25 24 50 50 H 1.09000 * 110.48837 * 264.92899 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.5787 -1.6369 -1.1342 6 6 1.7945 -0.1771 -2.4797 7 7 1.2999 1.0362 -2.5935 8 14 2.1748 -1.1780 -4.0103 9 1 1.0222 -2.0603 -4.3239 10 1 2.4217 -0.2615 -5.1524 11 1 3.3828 -2.0080 -3.7716 12 7 2.0185 -0.6907 1.1960 13 6 1.6646 -2.0934 1.4276 14 16 2.9705 0.1140 2.2861 15 8 2.8229 -0.5650 3.5257 16 8 2.6905 1.4970 2.1194 17 7 4.5438 -0.1043 1.8179 18 6 5.0140 0.4530 0.5472 19 6 6.5438 0.4450 0.5217 20 7 7.0152 1.0044 -0.7522 21 6 6.6713 2.4283 -0.8612 22 6 8.4604 0.7978 -0.9151 23 6 8.7910 -0.7090 -1.0627 24 6 10.1416 -0.7278 -1.8080 25 6 10.2438 0.6059 -2.5684 26 6 8.9513 1.3895 -2.2597 27 1 -0.3633 -1.0260 0.0589 28 1 -0.3633 0.5639 0.8590 29 1 -0.3633 0.4619 -0.9180 30 1 1.1322 1.4111 -3.4723 31 1 0.7377 -2.1447 1.9990 32 1 1.5296 -2.5969 0.4704 33 1 2.4630 -2.5821 1.9860 34 1 5.1542 -0.6013 2.3849 35 1 4.6543 1.4768 0.4443 36 1 4.6337 -0.1504 -0.2771 37 1 6.9035 -0.5788 0.6246 38 1 6.9240 1.0483 1.3460 39 1 6.9691 2.8000 -1.8417 40 1 5.5956 2.5529 -0.7369 41 1 7.1940 2.9888 -0.0861 42 1 9.0079 1.2326 -0.0789 43 1 8.0235 -1.2118 -1.6512 44 1 8.8893 -1.1765 -0.0830 45 1 10.1689 -1.5611 -2.5102 46 1 10.9607 -0.8144 -1.0941 47 1 11.1121 1.1671 -2.2231 48 1 10.3217 0.4200 -3.6397 49 1 9.1661 2.4528 -2.1529 50 1 8.2100 1.2259 -3.0419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330413812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:43 Heat of formation + Delta-G solvation = -82.858058 kcal Electronic energy + Delta-G solvation = -28861.486142 eV Core-core repulsion = 25050.027937 eV Total energy + Delta-G solvation = -3811.458205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.08841 -36.70970 -36.21823 -36.08234 -35.20400 -34.04153 -32.53935 -29.31270 -29.15248 -28.50634 -27.36053 -25.51860 -25.12824 -24.64351 -21.57626 -20.76423 -20.20821 -19.92054 -18.77162 -17.15758 -16.75030 -16.43034 -16.37697 -15.94542 -15.42795 -15.08681 -14.64669 -14.44198 -14.17234 -13.78984 -13.46678 -13.34986 -13.21139 -12.99592 -12.68343 -12.18300 -12.05168 -11.97257 -11.76113 -11.74109 -11.58455 -11.45672 -11.43533 -11.36361 -11.17228 -11.01424 -10.97957 -10.86554 -10.80715 -10.70706 -10.61518 -10.51707 -10.41429 -10.28118 -10.00613 -9.35097 -8.95910 -8.42544 -8.25039 -7.95921 -6.09461 -4.13981 1.30291 3.28390 3.35786 3.37071 3.49962 3.97903 4.22170 4.39220 4.42460 4.59034 4.80581 5.00795 5.13761 5.22076 5.23359 5.28998 5.34082 5.44401 5.49364 5.53986 5.58846 5.63218 5.67930 5.72038 5.79325 5.82772 5.88874 5.93633 6.08912 6.16641 6.19446 6.23983 6.25517 6.30012 6.40963 6.54691 6.66365 6.81648 6.83723 7.08198 7.12137 7.19422 7.30477 7.50517 7.64286 7.77827 7.96392 8.26103 8.88752 9.51325 10.97586 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.004586 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.390558 B = 6103.946003 C = 7851.555147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.265 3.735 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.785 3.215 15 O -1.002 7.002 16 O -0.982 6.982 17 N -1.132 6.132 18 C 0.121 3.879 19 C 0.052 3.948 20 N -0.528 5.528 21 C 0.018 3.982 22 C 0.078 3.922 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.118 4.118 27 H 0.034 0.966 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.354 -2.072 2.600 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.794 3.206 15 O -0.986 6.986 16 O -0.965 6.965 17 N -0.890 5.890 18 C -0.005 4.005 19 C -0.077 4.077 20 N -0.252 5.252 21 C -0.130 4.130 22 C -0.030 4.030 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.155 4.155 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.237 0.763 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.627 -1.546 2.714 13.981 hybrid contribution 0.981 -0.538 -0.388 1.185 sum 14.609 -2.084 2.325 14.939 Atomic orbital electron populations 1.21987 0.98468 0.99129 1.00320 1.18751 0.91402 0.93252 0.80353 0.91724 1.21292 1.36501 1.08726 0.90172 0.91874 1.24881 0.95013 0.94522 0.98845 1.69960 1.44194 1.13727 1.24124 0.86638 0.78664 0.80127 0.82729 1.20762 1.21359 1.19838 1.57689 1.64485 1.21304 1.39816 1.21167 0.98908 0.82052 1.01749 1.01698 0.72616 0.73685 0.72607 1.93541 1.86025 1.76230 1.42839 1.93575 1.83885 1.32533 1.86545 1.55977 1.30592 1.70890 1.31588 1.21278 0.93654 1.00164 0.85439 1.22249 0.95442 1.00178 0.89816 1.61915 1.13456 1.16435 1.33401 1.22515 1.02515 0.87103 1.00898 1.22656 0.87326 0.96188 0.96842 1.22425 0.97184 0.95609 1.00306 1.22083 0.97354 0.97656 0.98992 1.22083 0.97642 0.96056 1.00303 1.22423 0.97075 0.98729 0.97307 0.94670 0.96484 0.90659 0.92658 0.94007 0.90260 0.93205 0.76318 0.90553 0.88768 0.90375 0.94804 0.91138 0.90108 0.95986 0.93784 0.90090 0.92058 0.91753 0.92188 0.92179 0.91755 0.91989 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.12 37.16 0.34 -2.89 16 2 C 0.27 6.31 2.49 -69.08 -0.17 6.13 16 3 H 0.07 1.72 6.86 -51.93 -0.36 1.37 16 4 C -0.53 -13.05 7.68 -34.44 -0.26 -13.32 16 5 H 0.06 1.53 7.16 -52.48 -0.38 1.16 16 6 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 7 N -0.88 -23.83 12.16 55.43 0.67 -23.15 16 8 Si 0.89 20.16 29.55 -169.99 -5.02 15.13 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.99 -20.25 3.12 -115.84 -0.36 -20.61 16 13 C 0.11 1.90 9.21 59.85 0.55 2.45 16 14 S 2.79 54.59 6.09 -107.50 -0.66 53.94 16 15 O -1.00 -20.54 17.21 -57.17 -0.98 -21.53 16 16 O -0.98 -22.49 16.17 -57.17 -0.92 -23.41 16 17 N -1.13 -17.98 6.05 -10.61 -0.06 -18.04 16 18 C 0.12 1.99 6.18 -4.04 -0.02 1.97 16 19 C 0.05 0.70 5.00 -3.82 -0.02 0.68 16 20 N -0.53 -7.12 4.66 -232.44 -1.08 -8.20 16 21 C 0.02 0.23 9.08 60.06 0.55 0.78 16 22 C 0.08 0.88 2.58 -65.68 -0.17 0.72 16 23 C -0.12 -1.23 5.50 -25.03 -0.14 -1.37 16 24 C -0.12 -1.09 6.80 -25.61 -0.17 -1.26 16 25 C -0.12 -1.08 6.80 -25.62 -0.17 -1.25 16 26 C -0.12 -1.21 4.99 -25.07 -0.12 -1.34 16 27 H 0.03 0.75 7.56 -51.93 -0.39 0.36 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.88 6.84 -51.93 -0.36 1.52 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 34 H 0.41 5.22 8.65 -34.47 -0.30 4.93 16 35 H 0.08 1.39 6.08 -51.93 -0.32 1.07 16 36 H 0.09 1.77 7.82 -51.93 -0.41 1.36 16 37 H 0.08 0.95 6.86 -51.93 -0.36 0.59 16 38 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.07 0.86 6.93 -51.93 -0.36 0.50 16 40 H 0.08 1.21 6.30 -51.93 -0.33 0.88 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.60 7.76 -51.93 -0.40 0.20 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.59 7.97 -51.93 -0.41 0.18 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -29.92 396.29 -11.27 -41.19 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.91 Total: 5.68 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 0.08 Total: -6.97 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -0.83 Total: -70.00 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.91 Total: -44.94 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.66 Total: 53.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.92 -11.27 -41.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330413812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.667 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds