Wall clock time and date at job start Tue Mar 31 2020 17:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46882 * 2 1 4 4 C 1.50707 * 109.46729 * 240.00978 * 2 1 3 5 5 H 1.08003 * 119.99742 * 245.45359 * 4 2 1 6 6 C 1.37877 * 120.00257 * 65.45740 * 4 2 1 7 7 N 1.31513 * 120.00000 * 9.59660 * 6 4 2 8 8 Si 1.86796 * 119.99758 * 189.59730 * 6 4 2 9 9 H 1.48501 * 109.47138 * 84.99473 * 8 6 4 10 10 H 1.48501 * 109.46959 * 204.99102 * 8 6 4 11 11 H 1.48492 * 109.47448 * 324.99482 * 8 6 4 12 12 N 1.46494 * 109.47383 * 120.00758 * 2 1 3 13 13 C 1.46503 * 119.99840 * 60.00073 * 12 2 1 14 14 S 1.65597 * 119.99918 * 240.00185 * 12 2 1 15 15 O 1.42101 * 106.40213 * 156.46079 * 14 12 2 16 16 O 1.42094 * 106.40587 * 23.53909 * 14 12 2 17 17 N 1.65599 * 107.21776 * 269.99717 * 14 12 2 18 18 C 1.46497 * 119.99980 * 64.99770 * 17 14 12 19 19 C 1.53007 * 109.47278 * 165.00099 * 18 17 14 20 20 N 1.46900 * 109.47108 * 180.02562 * 19 18 17 21 21 C 1.46896 * 110.99994 * 66.04622 * 20 19 18 22 22 C 1.46901 * 110.99416 * 190.00112 * 20 19 18 23 23 C 1.54964 * 110.92694 * 66.54041 * 22 20 19 24 24 C 1.54269 * 104.16117 * 156.29097 * 23 22 20 25 25 C 1.53871 * 106.63854 * 336.44488 * 24 23 22 26 26 C 1.54265 * 106.60095 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46696 * 183.28368 * 1 2 3 28 28 H 1.08993 * 109.46947 * 303.28460 * 1 2 3 29 29 H 1.08999 * 109.46891 * 63.29016 * 1 2 3 30 30 H 0.97001 * 119.99693 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47275 * 269.99898 * 13 12 2 32 32 H 1.08998 * 109.47348 * 29.99675 * 13 12 2 33 33 H 1.09003 * 109.46978 * 150.00572 * 13 12 2 34 34 H 0.97007 * 120.00207 * 245.00450 * 17 14 12 35 35 H 1.09004 * 109.46917 * 45.00635 * 18 17 14 36 36 H 1.08999 * 109.47345 * 285.00277 * 18 17 14 37 37 H 1.08998 * 109.46902 * 59.99982 * 19 18 17 38 38 H 1.08999 * 109.46691 * 300.00720 * 19 18 17 39 39 H 1.09005 * 109.46978 * 183.95333 * 21 20 19 40 40 H 1.08994 * 109.47350 * 303.95057 * 21 20 19 41 41 H 1.09000 * 109.47376 * 63.95538 * 21 20 19 42 42 H 1.08998 * 110.67082 * 303.22860 * 22 20 19 43 43 H 1.09006 * 110.47334 * 37.63905 * 23 22 20 44 44 H 1.09001 * 110.52652 * 274.97452 * 23 22 20 45 45 H 1.09000 * 110.02765 * 217.13548 * 24 23 22 46 46 H 1.08999 * 110.02655 * 95.75731 * 24 23 22 47 47 H 1.08999 * 110.03296 * 119.26187 * 25 24 23 48 48 H 1.09006 * 110.03392 * 240.64068 * 25 24 23 49 49 H 1.09005 * 110.48393 * 142.29116 * 26 25 24 50 50 H 1.09000 * 110.48837 * 264.92899 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.5787 -1.6369 -1.1342 6 6 1.7945 -0.1771 -2.4797 7 7 1.2999 1.0362 -2.5935 8 14 2.1748 -1.1780 -4.0103 9 1 1.0222 -2.0603 -4.3239 10 1 2.4217 -0.2615 -5.1524 11 1 3.3828 -2.0080 -3.7716 12 7 2.0185 -0.6907 1.1960 13 6 1.6646 -2.0934 1.4276 14 16 2.9705 0.1140 2.2861 15 8 2.8229 -0.5650 3.5257 16 8 2.6905 1.4970 2.1194 17 7 4.5438 -0.1043 1.8179 18 6 5.0140 0.4530 0.5472 19 6 6.5438 0.4450 0.5217 20 7 7.0152 1.0044 -0.7522 21 6 6.6713 2.4283 -0.8612 22 6 8.4604 0.7978 -0.9151 23 6 8.7910 -0.7090 -1.0627 24 6 10.1416 -0.7278 -1.8080 25 6 10.2438 0.6059 -2.5684 26 6 8.9513 1.3895 -2.2597 27 1 -0.3633 -1.0260 0.0589 28 1 -0.3633 0.5639 0.8590 29 1 -0.3633 0.4619 -0.9180 30 1 1.1322 1.4111 -3.4723 31 1 0.7377 -2.1447 1.9990 32 1 1.5296 -2.5969 0.4704 33 1 2.4630 -2.5821 1.9860 34 1 5.1542 -0.6013 2.3849 35 1 4.6543 1.4768 0.4443 36 1 4.6337 -0.1504 -0.2771 37 1 6.9035 -0.5788 0.6246 38 1 6.9240 1.0483 1.3460 39 1 6.9691 2.8000 -1.8417 40 1 5.5956 2.5529 -0.7369 41 1 7.1940 2.9888 -0.0861 42 1 9.0079 1.2326 -0.0789 43 1 8.0235 -1.2118 -1.6512 44 1 8.8893 -1.1765 -0.0830 45 1 10.1689 -1.5611 -2.5102 46 1 10.9607 -0.8144 -1.0941 47 1 11.1121 1.1671 -2.2231 48 1 10.3217 0.4200 -3.6397 49 1 9.1661 2.4528 -2.1529 50 1 8.2100 1.2259 -3.0419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330413812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:42 Heat of formation + Delta-G solvation = -104.054626 kcal Electronic energy + Delta-G solvation = -28862.405294 eV Core-core repulsion = 25050.027937 eV Total energy + Delta-G solvation = -3812.377357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.01334 -38.35721 -37.84444 -37.29838 -36.89913 -35.23713 -34.43319 -30.97856 -30.24253 -29.45814 -28.32417 -27.19341 -26.97975 -25.74508 -22.72763 -22.58404 -20.98656 -20.84637 -20.28230 -18.74985 -18.38275 -18.26641 -17.54660 -17.06091 -16.72187 -16.48288 -16.07286 -15.55431 -15.49327 -15.20890 -14.95168 -14.67513 -14.43499 -14.19313 -14.01820 -13.72680 -13.50923 -13.33491 -13.25891 -13.19491 -13.10055 -12.94301 -12.87858 -12.77370 -12.60166 -12.59710 -12.26859 -12.19564 -12.15767 -11.84017 -11.80983 -11.70930 -11.66795 -11.59724 -11.21315 -11.18765 -10.43212 -10.39217 -9.65468 -9.26701 -8.06782 -6.16189 -0.28649 1.48101 1.50430 1.57678 1.99693 2.49783 2.60771 2.98398 3.24514 3.46230 3.62313 3.80793 3.91542 4.07251 4.11295 4.19109 4.39815 4.45056 4.50184 4.54542 4.57450 4.61713 4.70067 4.74016 4.75909 4.82093 4.83819 4.96066 4.96517 5.00812 5.07045 5.09519 5.12228 5.14080 5.16737 5.24735 5.28555 5.31719 5.37475 5.52820 5.59396 5.70383 5.87607 6.02272 6.08044 6.21958 6.25891 6.32412 6.92014 7.51927 9.00251 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.004586 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.390558 B = 6103.946003 C = 7851.555147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.029 0.971 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.027 3.973 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.267 1.267 12 N -0.996 5.996 13 C 0.100 3.900 14 S 2.800 3.200 15 O -1.007 7.007 16 O -1.018 7.018 17 N -1.114 6.114 18 C 0.127 3.873 19 C 0.061 3.939 20 N -0.545 5.545 21 C 0.020 3.980 22 C 0.077 3.923 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.051 0.949 28 H 0.021 0.979 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.423 0.577 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.374 -3.702 2.970 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.047 0.953 4 C -0.563 4.563 5 H 0.087 0.913 6 C -0.174 4.174 7 N -0.554 5.554 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.191 1.191 12 N -0.838 5.838 13 C -0.046 4.046 14 S 2.809 3.191 15 O -0.991 6.991 16 O -1.002 7.002 17 N -0.877 5.877 18 C 0.001 3.999 19 C -0.069 4.069 20 N -0.270 5.270 21 C -0.128 4.128 22 C -0.031 4.031 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.155 4.155 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.656 -3.213 3.111 16.282 hybrid contribution 0.369 -0.031 -0.453 0.585 sum 16.026 -3.244 2.658 16.565 Atomic orbital electron populations 1.21893 0.98155 0.99948 0.99401 1.18414 0.91611 0.91764 0.81433 0.95292 1.21487 1.35746 1.08538 0.90501 0.91346 1.25546 0.95184 0.95193 1.01450 1.70082 1.45696 1.15165 1.24475 0.85734 0.78659 0.78719 0.79478 1.20325 1.21858 1.19111 1.57587 1.65115 1.22485 1.38657 1.21394 1.00474 0.80407 1.02295 1.01090 0.73095 0.72736 0.72208 1.93528 1.86450 1.76084 1.43064 1.93532 1.84745 1.34920 1.86967 1.55540 1.29618 1.70865 1.31650 1.21139 0.96041 0.98223 0.84533 1.22161 0.92790 1.01493 0.90414 1.61896 1.15260 1.16375 1.33494 1.22446 1.00965 0.87589 1.01789 1.22747 0.85794 0.96998 0.97558 1.22417 0.97560 0.94785 1.00733 1.22079 0.96730 0.97763 0.99196 1.22080 0.97133 0.95930 1.00631 1.22414 0.97424 0.99463 0.96242 0.93033 0.95940 0.92878 0.92884 0.92915 0.90357 0.90726 0.74190 0.92838 0.91220 0.88674 0.93548 0.90435 0.92740 0.94712 0.92896 0.92043 0.91120 0.91462 0.90780 0.90822 0.91443 0.91311 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.12 71.99 0.66 -5.61 16 2 C 0.27 13.12 2.49 44.25 0.11 13.23 16 3 H 0.03 1.62 6.86 -2.39 -0.02 1.60 16 4 C -0.52 -25.98 7.68 25.60 0.20 -25.78 16 5 H 0.07 3.27 7.16 -2.91 -0.02 3.25 16 6 C 0.03 1.38 5.17 84.65 0.44 1.82 16 7 N -0.92 -50.68 12.16 21.45 0.26 -50.42 16 8 Si 0.95 41.42 29.55 68.60 2.03 43.44 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -1.00 -40.28 3.12 -520.42 -1.62 -41.91 16 13 C 0.10 3.33 9.21 127.77 1.18 4.51 16 14 S 2.80 108.74 6.09 -56.49 -0.34 108.40 16 15 O -1.01 -39.76 17.21 -128.00 -2.20 -41.96 16 16 O -1.02 -47.65 16.17 -128.00 -2.07 -49.72 16 17 N -1.11 -34.42 6.05 -187.48 -1.14 -35.55 16 18 C 0.13 4.22 6.18 86.38 0.53 4.76 16 19 C 0.06 1.55 5.00 86.31 0.43 1.98 16 20 N -0.55 -14.37 4.66 -889.31 -4.15 -18.52 16 21 C 0.02 0.53 9.08 127.69 1.16 1.69 16 22 C 0.08 1.61 2.58 46.23 0.12 1.73 16 23 C -0.12 -2.23 5.50 31.70 0.17 -2.06 16 24 C -0.12 -1.83 6.80 31.32 0.21 -1.61 16 25 C -0.12 -1.84 6.80 31.32 0.21 -1.62 16 26 C -0.12 -2.26 4.99 31.67 0.16 -2.10 16 27 H 0.05 2.18 7.56 -2.39 -0.02 2.16 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 2.70 6.84 -2.39 -0.02 2.68 16 30 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 2.63 6.92 -2.39 -0.02 2.61 16 33 H 0.07 2.10 7.79 -2.39 -0.02 2.09 16 34 H 0.42 10.03 8.65 -96.74 -0.84 9.20 16 35 H 0.05 2.03 6.08 -2.39 -0.01 2.02 16 36 H 0.07 2.67 7.82 -2.39 -0.02 2.65 16 37 H 0.09 2.10 6.86 -2.39 -0.02 2.09 16 38 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.08 1.90 6.93 -2.38 -0.02 1.88 16 40 H 0.05 1.72 6.30 -2.39 -0.02 1.71 16 41 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.07 1.20 7.76 -2.39 -0.02 1.18 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.07 1.21 7.97 -2.38 -0.02 1.19 16 50 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.20 396.29 -3.58 -67.77 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.07 Total: 27.55 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.58 Total: -9.08 kcal Atomic # 7 Polarization: -139.76 SS G_CDS: -6.64 Total: -146.40 kcal Atomic # 8 Polarization: -87.41 SS G_CDS: -4.27 Total: -91.68 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 108.74 SS G_CDS: -0.34 Total: 108.40 kcal Total: -64.20 -3.58 -67.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330413812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.280 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds