Wall clock time and date at job start Tue Mar 31 2020 17:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47644 * 2 1 4 4 C 1.50699 * 109.47093 * 120.00296 * 2 1 3 5 5 H 1.07990 * 120.00378 * 119.99730 * 4 2 1 6 6 C 1.37883 * 119.99804 * 299.99880 * 4 2 1 7 7 N 1.31519 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00006 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47304 * 120.00018 * 8 6 4 11 11 H 1.48504 * 109.46909 * 239.99877 * 8 6 4 12 12 N 1.46497 * 109.46970 * 239.99753 * 2 1 3 13 13 C 1.46497 * 120.00341 * 300.00599 * 12 2 1 14 14 S 1.65596 * 119.99869 * 120.00230 * 12 2 1 15 15 O 1.42104 * 106.40598 * 336.46139 * 14 12 2 16 16 O 1.42105 * 106.40697 * 203.54008 * 14 12 2 17 17 N 1.65599 * 107.21966 * 90.00092 * 14 12 2 18 18 C 1.46503 * 120.00105 * 65.00114 * 17 14 12 19 19 C 1.52996 * 109.47634 * 165.00516 * 18 17 14 20 20 N 1.46895 * 109.47683 * 179.97438 * 19 18 17 21 21 C 1.46907 * 110.99872 * 66.03976 * 20 19 18 22 22 C 1.46892 * 111.00234 * 189.99686 * 20 19 18 23 23 C 1.54961 * 110.92423 * 66.53975 * 22 20 19 24 24 C 1.54270 * 104.16191 * 156.29494 * 23 22 20 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47644 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46833 * 300.00536 * 1 2 3 29 29 H 1.09004 * 109.46627 * 59.99948 * 1 2 3 30 30 H 0.97001 * 119.99821 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.47155 * 270.00142 * 13 12 2 32 32 H 1.08999 * 109.46956 * 29.99588 * 13 12 2 33 33 H 1.09004 * 109.47595 * 150.00238 * 13 12 2 34 34 H 0.97004 * 120.00603 * 244.99877 * 17 14 12 35 35 H 1.08997 * 109.47103 * 44.99371 * 18 17 14 36 36 H 1.09011 * 109.47029 * 285.00261 * 18 17 14 37 37 H 1.09001 * 109.47409 * 59.98988 * 19 18 17 38 38 H 1.09011 * 109.46704 * 299.99944 * 19 18 17 39 39 H 1.08998 * 109.46887 * 183.95462 * 21 20 19 40 40 H 1.08998 * 109.46845 * 303.95821 * 21 20 19 41 41 H 1.09004 * 109.46731 * 63.95898 * 21 20 19 42 42 H 1.09001 * 110.67587 * 303.23145 * 22 20 19 43 43 H 1.08997 * 110.47708 * 37.64092 * 23 22 20 44 44 H 1.09002 * 110.53308 * 274.97484 * 23 22 20 45 45 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 46 46 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 47 47 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 48 48 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 49 49 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 50 50 H 1.09001 * 110.48482 * 264.93365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1473 -2.2864 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5866 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6905 1.4972 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8415 19 6 6.6577 -1.3315 -1.7334 20 7 7.2512 -2.6750 -1.7564 21 6 7.0402 -3.3215 -3.0586 22 6 8.6799 -2.6252 -1.4187 23 6 8.8857 -2.1882 0.0537 24 6 10.2714 -2.7550 0.4256 25 6 10.5350 -3.9345 -0.5268 26 6 9.2999 -4.0444 -1.4446 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7087 1.1612 3.4844 31 1 2.4156 -2.7378 -0.9716 32 1 0.6903 -2.3001 -0.9847 33 1 1.6237 -2.2853 -2.5002 34 1 5.0735 0.6548 -1.5282 35 1 4.8735 -1.9409 -2.7756 36 1 4.7539 -2.0250 -1.0017 37 1 6.9198 -0.8347 -0.7993 38 1 7.0395 -0.7507 -2.5732 39 1 7.4273 -4.3399 -3.0255 40 1 5.9741 -3.3451 -3.2839 41 1 7.5629 -2.7591 -3.8323 42 1 9.2127 -1.9586 -2.0969 43 1 8.1136 -2.6194 0.6909 44 1 8.8843 -1.1011 0.1336 45 1 10.2676 -3.1029 1.4586 46 1 11.0359 -1.9896 0.2925 47 1 11.4270 -3.7411 -1.1227 48 1 10.6600 -4.8546 0.0440 49 1 9.6001 -4.3111 -2.4579 50 1 8.5950 -4.7759 -1.0495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330413815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:46 Heat of formation + Delta-G solvation = -81.263739 kcal Electronic energy + Delta-G solvation = -28433.760455 eV Core-core repulsion = 24622.371385 eV Total energy + Delta-G solvation = -3811.389070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.25062 -36.74433 -36.36098 -36.10011 -35.24060 -34.17676 -32.57716 -29.44025 -29.04639 -28.64074 -27.54313 -25.54857 -25.11816 -24.83006 -21.78565 -20.74234 -20.31000 -20.06846 -18.78586 -17.24393 -16.76572 -16.59566 -16.26309 -16.09607 -15.69019 -15.09921 -14.81567 -14.62527 -14.24793 -13.97477 -13.50554 -13.46711 -13.26420 -13.12363 -12.79577 -12.37217 -12.25691 -11.97567 -11.89165 -11.75034 -11.63769 -11.51200 -11.48500 -11.33999 -11.14590 -11.13174 -11.00470 -10.99236 -10.84644 -10.81864 -10.76322 -10.60762 -10.41016 -10.24373 -10.01116 -9.32349 -9.05485 -8.48597 -8.46943 -7.93672 -6.07574 -4.15565 1.27962 3.25089 3.33522 3.35873 3.41845 3.83331 4.17626 4.30054 4.37713 4.47755 4.69711 4.85212 4.99571 5.08141 5.15284 5.17939 5.23153 5.30086 5.34462 5.35602 5.43344 5.50136 5.51942 5.64486 5.67109 5.72119 5.74053 5.85220 5.87434 5.96415 6.04178 6.07904 6.15339 6.19221 6.25254 6.38172 6.67500 6.85893 6.88259 6.90504 6.96854 7.11795 7.26832 7.55101 7.66551 7.80399 8.06502 8.28397 8.88346 9.50900 10.97513 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.003925 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.546583 B = 7132.409726 C = 9015.972124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.099 3.901 14 S 2.786 3.214 15 O -0.982 6.982 16 O -1.001 7.001 17 N -1.129 6.129 18 C 0.126 3.874 19 C 0.049 3.951 20 N -0.531 5.531 21 C 0.017 3.983 22 C 0.078 3.922 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.116 4.116 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.487 -8.348 -7.440 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.832 5.832 13 C -0.048 4.048 14 S 2.794 3.206 15 O -0.966 6.966 16 O -0.984 6.984 17 N -0.888 5.888 18 C -0.001 4.001 19 C -0.080 4.080 20 N -0.256 5.256 21 C -0.131 4.131 22 C -0.031 4.031 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.154 4.154 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.757 -8.189 -7.786 18.586 hybrid contribution 1.089 0.152 0.855 1.393 sum 15.846 -8.036 -6.931 19.071 Atomic orbital electron populations 1.22070 0.98069 0.99614 1.00814 1.18725 0.91801 0.92707 0.80274 0.92394 1.21429 1.31609 1.13000 0.90102 0.91834 1.24930 0.95005 0.94983 0.99001 1.69895 1.36422 1.22723 1.23635 0.86486 0.78615 0.79642 0.82902 1.19728 1.21070 1.21052 1.57636 1.64424 1.21404 1.39695 1.21283 1.01900 0.81823 0.99790 1.01667 0.72538 0.73071 0.73310 1.93595 1.83619 1.32496 1.86916 1.93521 1.86059 1.76443 1.42392 1.55980 1.32430 1.14850 1.85492 1.21121 0.93134 0.83475 1.02385 1.22277 0.94213 0.89656 1.01869 1.61958 1.13739 1.19522 1.30353 1.22511 1.02417 0.99308 0.88894 1.22671 0.87136 0.96724 0.96528 1.22432 0.97286 1.00362 0.95532 1.22086 0.97026 0.97520 0.99521 1.22085 0.97783 0.98666 0.97575 1.22415 0.96936 0.96719 0.99338 0.94808 0.88861 0.96849 0.92759 0.93807 0.90653 0.92122 0.75628 0.91004 0.90529 0.89754 0.94328 0.91102 0.90699 0.95703 0.93560 0.90088 0.91808 0.91640 0.92067 0.92107 0.91716 0.92020 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 2 C 0.27 6.53 2.62 -69.08 -0.18 6.34 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.37 8.37 -34.44 -0.29 -13.65 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.99 -20.37 3.12 -115.85 -0.36 -20.73 16 13 C 0.10 1.74 9.90 59.85 0.59 2.34 16 14 S 2.79 54.26 6.14 -107.50 -0.66 53.60 16 15 O -0.98 -22.35 16.70 -57.17 -0.95 -23.30 16 16 O -1.00 -20.27 16.21 -57.17 -0.93 -21.20 16 17 N -1.13 -17.73 6.05 -10.61 -0.06 -17.79 16 18 C 0.13 1.75 6.18 -4.04 -0.02 1.72 16 19 C 0.05 0.58 5.00 -3.83 -0.02 0.56 16 20 N -0.53 -5.81 4.66 -232.44 -1.08 -6.89 16 21 C 0.02 0.16 9.08 60.07 0.55 0.71 16 22 C 0.08 0.75 2.58 -65.68 -0.17 0.58 16 23 C -0.12 -1.14 5.50 -25.03 -0.14 -1.28 16 24 C -0.12 -1.00 6.80 -25.61 -0.17 -1.17 16 25 C -0.12 -0.92 6.80 -25.62 -0.17 -1.10 16 26 C -0.12 -0.97 4.99 -25.07 -0.12 -1.09 16 27 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 32 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 33 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 34 H 0.41 5.77 8.65 -34.48 -0.30 5.47 16 35 H 0.07 0.98 6.08 -51.93 -0.32 0.66 16 36 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 37 H 0.08 0.98 6.86 -51.93 -0.36 0.63 16 38 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 39 H 0.07 0.60 6.93 -51.93 -0.36 0.24 16 40 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 41 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.61 7.76 -51.93 -0.40 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.46 7.97 -51.93 -0.41 0.05 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -30.71 394.42 -11.22 -41.93 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.80 Total: 4.43 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 0.08 Total: -7.62 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -0.88 Total: -69.22 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.88 Total: -44.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 54.26 SS G_CDS: -0.66 Total: 53.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.71 -11.22 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330413815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.331 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds