Wall clock time and date at job start Tue Mar 31 2020 17:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47644 * 2 1 4 4 C 1.50699 * 109.47093 * 120.00296 * 2 1 3 5 5 H 1.07990 * 120.00378 * 119.99730 * 4 2 1 6 6 C 1.37883 * 119.99804 * 299.99880 * 4 2 1 7 7 N 1.31519 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00006 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47304 * 120.00018 * 8 6 4 11 11 H 1.48504 * 109.46909 * 239.99877 * 8 6 4 12 12 N 1.46497 * 109.46970 * 239.99753 * 2 1 3 13 13 C 1.46497 * 120.00341 * 300.00599 * 12 2 1 14 14 S 1.65596 * 119.99869 * 120.00230 * 12 2 1 15 15 O 1.42104 * 106.40598 * 336.46139 * 14 12 2 16 16 O 1.42105 * 106.40697 * 203.54008 * 14 12 2 17 17 N 1.65599 * 107.21966 * 90.00092 * 14 12 2 18 18 C 1.46503 * 120.00105 * 65.00114 * 17 14 12 19 19 C 1.52996 * 109.47634 * 165.00516 * 18 17 14 20 20 N 1.46895 * 109.47683 * 179.97438 * 19 18 17 21 21 C 1.46907 * 110.99872 * 66.03976 * 20 19 18 22 22 C 1.46892 * 111.00234 * 189.99686 * 20 19 18 23 23 C 1.54961 * 110.92423 * 66.53975 * 22 20 19 24 24 C 1.54270 * 104.16191 * 156.29494 * 23 22 20 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47644 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46833 * 300.00536 * 1 2 3 29 29 H 1.09004 * 109.46627 * 59.99948 * 1 2 3 30 30 H 0.97001 * 119.99821 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.47155 * 270.00142 * 13 12 2 32 32 H 1.08999 * 109.46956 * 29.99588 * 13 12 2 33 33 H 1.09004 * 109.47595 * 150.00238 * 13 12 2 34 34 H 0.97004 * 120.00603 * 244.99877 * 17 14 12 35 35 H 1.08997 * 109.47103 * 44.99371 * 18 17 14 36 36 H 1.09011 * 109.47029 * 285.00261 * 18 17 14 37 37 H 1.09001 * 109.47409 * 59.98988 * 19 18 17 38 38 H 1.09011 * 109.46704 * 299.99944 * 19 18 17 39 39 H 1.08998 * 109.46887 * 183.95462 * 21 20 19 40 40 H 1.08998 * 109.46845 * 303.95821 * 21 20 19 41 41 H 1.09004 * 109.46731 * 63.95898 * 21 20 19 42 42 H 1.09001 * 110.67587 * 303.23145 * 22 20 19 43 43 H 1.08997 * 110.47708 * 37.64092 * 23 22 20 44 44 H 1.09002 * 110.53308 * 274.97484 * 23 22 20 45 45 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 46 46 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 47 47 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 48 48 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 49 49 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 50 50 H 1.09001 * 110.48482 * 264.93365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1473 -2.2864 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5866 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6905 1.4972 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8415 19 6 6.6577 -1.3315 -1.7334 20 7 7.2512 -2.6750 -1.7564 21 6 7.0402 -3.3215 -3.0586 22 6 8.6799 -2.6252 -1.4187 23 6 8.8857 -2.1882 0.0537 24 6 10.2714 -2.7550 0.4256 25 6 10.5350 -3.9345 -0.5268 26 6 9.2999 -4.0444 -1.4446 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7087 1.1612 3.4844 31 1 2.4156 -2.7378 -0.9716 32 1 0.6903 -2.3001 -0.9847 33 1 1.6237 -2.2853 -2.5002 34 1 5.0735 0.6548 -1.5282 35 1 4.8735 -1.9409 -2.7756 36 1 4.7539 -2.0250 -1.0017 37 1 6.9198 -0.8347 -0.7993 38 1 7.0395 -0.7507 -2.5732 39 1 7.4273 -4.3399 -3.0255 40 1 5.9741 -3.3451 -3.2839 41 1 7.5629 -2.7591 -3.8323 42 1 9.2127 -1.9586 -2.0969 43 1 8.1136 -2.6194 0.6909 44 1 8.8843 -1.1011 0.1336 45 1 10.2676 -3.1029 1.4586 46 1 11.0359 -1.9896 0.2925 47 1 11.4270 -3.7411 -1.1227 48 1 10.6600 -4.8546 0.0440 49 1 9.6001 -4.3111 -2.4579 50 1 8.5950 -4.7759 -1.0495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330413815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:45 Heat of formation + Delta-G solvation = -102.851033 kcal Electronic energy + Delta-G solvation = -28434.696550 eV Core-core repulsion = 24622.371385 eV Total energy + Delta-G solvation = -3812.325165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.02369 -38.35071 -37.89022 -37.31162 -36.90871 -35.23811 -34.49026 -30.89518 -30.24488 -29.46937 -28.31807 -27.28492 -26.95015 -25.73551 -22.78997 -22.53580 -20.99909 -20.84547 -20.26113 -18.81129 -18.34349 -18.27546 -17.53544 -17.16269 -16.80009 -16.47258 -16.09661 -15.66246 -15.49311 -15.12931 -14.94707 -14.68755 -14.59653 -14.19666 -14.03183 -13.67998 -13.46736 -13.38295 -13.23098 -13.17935 -13.09101 -12.93520 -12.90828 -12.75528 -12.61686 -12.58682 -12.27525 -12.20461 -12.12211 -11.87167 -11.81036 -11.71402 -11.66944 -11.60713 -11.22456 -11.13640 -10.48954 -10.41753 -9.64023 -9.30758 -8.07316 -6.21609 -0.28273 1.44889 1.48217 1.58309 1.98112 2.47139 2.59410 2.96525 3.21300 3.46382 3.61157 3.79410 3.87698 4.04490 4.08909 4.16994 4.39095 4.44178 4.49297 4.52459 4.61083 4.62135 4.69732 4.75282 4.76415 4.82361 4.83765 4.95455 4.97506 5.00030 5.02984 5.10302 5.11763 5.12808 5.19230 5.19960 5.24571 5.31153 5.34990 5.51619 5.63403 5.72230 5.87188 6.02499 6.09278 6.18309 6.19655 6.31984 6.88261 7.48211 8.97384 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.003925 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.546583 B = 7132.409726 C = 9015.972124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.525 4.525 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.996 5.996 13 C 0.094 3.906 14 S 2.802 3.198 15 O -1.018 7.018 16 O -1.006 7.006 17 N -1.119 6.119 18 C 0.124 3.876 19 C 0.055 3.945 20 N -0.541 5.541 21 C 0.016 3.984 22 C 0.077 3.923 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.420 0.580 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.185 -10.058 -7.699 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.564 4.564 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.837 5.837 13 C -0.052 4.052 14 S 2.810 3.190 15 O -1.002 7.002 16 O -0.990 6.990 17 N -0.881 5.881 18 C -0.002 4.002 19 C -0.074 4.074 20 N -0.266 5.266 21 C -0.132 4.132 22 C -0.032 4.032 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.150 4.150 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.460 -9.919 -8.061 20.840 hybrid contribution 0.592 0.668 0.879 1.253 sum 17.052 -9.251 -7.182 20.687 Atomic orbital electron populations 1.21960 0.97919 1.00141 1.00011 1.18391 0.91936 0.91356 0.81430 0.95718 1.21654 1.31256 1.12908 0.90617 0.91404 1.25666 0.95262 0.95614 1.01776 1.70025 1.37579 1.24065 1.24172 0.85525 0.78023 0.78677 0.79470 1.18822 1.21191 1.20923 1.57531 1.65236 1.22491 1.38483 1.21470 1.02288 0.80359 1.01067 1.01029 0.72995 0.71950 0.72997 1.93544 1.84563 1.34796 1.87317 1.93508 1.86527 1.76340 1.42608 1.55656 1.31104 1.16185 1.85191 1.21244 0.94588 0.82076 1.02294 1.22163 0.92612 0.90508 1.02146 1.61956 1.14636 1.18854 1.31157 1.22549 1.02219 1.00000 0.88450 1.22726 0.86392 0.97702 0.96332 1.22423 0.97759 1.00192 0.95433 1.22086 0.96189 0.97983 0.99759 1.22086 0.97760 0.98594 0.97418 1.22389 0.96966 0.95522 1.00135 0.93535 0.91168 0.96138 0.92816 0.92422 0.90762 0.90442 0.74579 0.90459 0.91393 0.89877 0.93593 0.89852 0.91260 0.95201 0.93312 0.91826 0.92057 0.91600 0.91318 0.91041 0.91173 0.90956 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 8.95 71.98 0.64 -6.10 16 2 C 0.27 13.40 2.62 44.25 0.12 13.51 16 3 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 4 C -0.52 -26.70 8.37 25.60 0.21 -26.48 16 5 H 0.07 3.33 7.65 -2.92 -0.02 3.31 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.11 11.32 21.45 0.24 -50.87 16 8 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 N -1.00 -40.48 3.12 -520.45 -1.62 -42.11 16 13 C 0.09 3.17 9.90 127.77 1.26 4.44 16 14 S 2.80 107.98 6.14 -56.49 -0.35 107.63 16 15 O -1.02 -46.89 16.70 -128.00 -2.14 -49.02 16 16 O -1.01 -39.57 16.21 -128.00 -2.08 -41.65 16 17 N -1.12 -34.29 6.05 -187.48 -1.14 -35.43 16 18 C 0.12 3.29 6.18 86.38 0.53 3.83 16 19 C 0.06 1.22 5.00 86.30 0.43 1.65 16 20 N -0.54 -10.97 4.66 -889.31 -4.15 -15.11 16 21 C 0.02 0.27 9.08 127.69 1.16 1.43 16 22 C 0.08 1.34 2.58 46.24 0.12 1.46 16 23 C -0.12 -2.18 5.50 31.70 0.17 -2.00 16 24 C -0.12 -1.77 6.80 31.32 0.21 -1.56 16 25 C -0.12 -1.54 6.80 31.32 0.21 -1.32 16 26 C -0.11 -1.63 4.99 31.67 0.16 -1.48 16 27 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.07 2.52 6.43 -2.39 -0.02 2.50 16 33 H 0.08 2.36 7.02 -2.39 -0.02 2.34 16 34 H 0.42 11.53 8.65 -96.74 -0.84 10.69 16 35 H 0.08 1.98 6.08 -2.39 -0.01 1.97 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.08 1.85 6.86 -2.39 -0.02 1.83 16 38 H 0.05 0.95 8.12 -2.38 -0.02 0.93 16 39 H 0.08 1.24 6.93 -2.39 -0.02 1.22 16 40 H 0.07 1.28 6.30 -2.39 -0.02 1.27 16 41 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.11 7.76 -2.39 -0.02 1.09 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.90 7.97 -2.39 -0.02 0.88 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.36 394.42 -3.43 -67.78 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.08 Total: 26.44 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.69 Total: -11.32 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -6.66 Total: -143.52 kcal Atomic # 8 Polarization: -86.46 SS G_CDS: -4.21 Total: -90.67 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 107.98 SS G_CDS: -0.35 Total: 107.63 kcal Total: -64.36 -3.43 -67.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330413815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.070 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds