Wall clock time and date at job start Tue Mar 31 2020 17:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47397 * 2 1 4 4 C 1.47448 * 110.99791 * 69.15887 * 3 2 1 5 5 C 1.54324 * 107.23220 * 123.25747 * 4 3 2 6 6 C 1.55142 * 103.01927 * 22.28355 * 5 4 3 7 7 C 1.47850 * 111.00231 * 190.00192 * 3 2 1 8 8 H 1.09000 * 110.37297 * 332.57857 * 7 3 2 9 9 C 1.52997 * 110.37353 * 94.80613 * 7 3 2 10 10 N 1.46505 * 109.47212 * 305.00051 * 9 7 3 11 11 C 1.46494 * 120.00080 * 275.00347 * 10 9 7 12 12 S 1.65596 * 119.99655 * 94.99926 * 10 9 7 13 13 O 1.42103 * 106.40201 * 203.53703 * 12 10 9 14 14 O 1.42095 * 106.40562 * 336.46073 * 12 10 9 15 15 N 1.65601 * 107.21751 * 90.00120 * 12 10 9 16 16 C 1.46496 * 120.00201 * 269.99717 * 15 12 10 17 17 C 1.46500 * 120.00119 * 90.00030 * 15 12 10 18 18 H 1.08998 * 109.47269 * 359.97438 * 17 15 12 19 19 C 1.53001 * 109.46822 * 239.99928 * 17 15 12 20 20 C 1.50699 * 109.47351 * 119.99789 * 17 15 12 21 21 H 1.07998 * 119.99997 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99747 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00173 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99598 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47057 * 90.00114 * 24 22 20 26 26 H 1.48501 * 109.46802 * 209.99844 * 24 22 20 27 27 H 1.48500 * 109.47260 * 329.99824 * 24 22 20 28 28 H 1.09000 * 109.46472 * 299.99649 * 1 2 3 29 29 H 1.09004 * 109.47244 * 59.99543 * 1 2 3 30 30 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47244 * 120.00457 * 2 1 3 33 33 H 1.08998 * 109.88714 * 242.66005 * 4 3 2 34 34 H 1.09000 * 109.88821 * 3.69112 * 4 3 2 35 35 H 1.09000 * 110.70182 * 140.66794 * 5 4 3 36 36 H 1.09000 * 110.70513 * 263.72813 * 5 4 3 37 37 H 1.08997 * 110.99438 * 206.25347 * 6 5 4 38 38 H 1.09002 * 110.98830 * 82.43565 * 6 5 4 39 39 H 1.09002 * 109.47153 * 185.00043 * 9 7 3 40 40 H 1.09001 * 109.46832 * 65.00234 * 9 7 3 41 41 H 1.08993 * 109.47522 * 90.00073 * 11 10 9 42 42 H 1.08998 * 109.46906 * 210.00311 * 11 10 9 43 43 H 1.09003 * 109.46940 * 329.99268 * 11 10 9 44 44 H 1.08999 * 109.47379 * 89.99390 * 16 15 12 45 45 H 1.08995 * 109.47807 * 210.00110 * 16 15 12 46 46 H 1.09012 * 109.47302 * 329.99992 * 16 15 12 47 47 H 1.08998 * 109.47616 * 299.99509 * 19 17 15 48 48 H 1.09003 * 109.46964 * 60.00005 * 19 17 15 49 49 H 1.09000 * 109.47302 * 179.97438 * 19 17 15 50 50 H 0.96997 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7341 2.0464 1.2865 5 6 3.0803 2.5445 1.8532 6 6 3.9771 2.6399 0.5908 7 6 3.4779 1.4314 -0.2397 8 1 3.9488 0.5110 0.1057 9 6 3.7666 1.6508 -1.7261 10 7 3.0895 0.6169 -2.5129 11 6 3.7330 -0.6822 -2.7236 12 16 1.5968 0.9168 -3.1640 13 8 0.9829 -0.3496 -3.3606 14 8 1.0160 1.9484 -2.3779 15 7 1.8393 1.5580 -4.6714 16 6 1.9633 3.0080 -4.8395 17 6 1.9297 0.6751 -5.8371 18 1 1.8154 -0.3608 -5.5180 19 6 3.2931 0.8542 -6.5078 20 6 0.8384 1.0228 -6.8165 21 1 0.1469 1.8218 -6.5932 22 6 0.7235 0.3215 -7.9981 23 7 1.5659 -0.6511 -8.2701 24 14 -0.6288 0.7530 -9.2124 25 1 -0.1326 1.7826 -10.1606 26 1 -1.0243 -0.4641 -9.9657 27 1 -1.8044 1.2834 -8.4763 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.0632 2.8907 1.1284 34 1 1.2791 1.3353 1.9760 35 1 2.9640 3.5235 2.3183 36 1 3.4879 1.8270 2.5653 37 1 5.0298 2.5274 0.8502 38 1 3.8054 3.5762 0.0598 39 1 4.8412 1.5940 -1.8998 40 1 3.4015 2.6331 -2.0260 41 1 3.4480 -1.3632 -1.9218 42 1 3.4143 -1.0944 -3.6810 43 1 4.8157 -0.5553 -2.7251 44 1 3.0105 3.2961 -4.7480 45 1 1.5928 3.2927 -5.8242 46 1 1.3788 3.5142 -4.0711 47 1 3.4079 1.8901 -6.8270 48 1 4.0824 0.6027 -5.7994 49 1 3.3607 0.1971 -7.3748 50 1 1.4853 -1.1442 -9.1015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330424226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:03 Heat of formation + Delta-G solvation = -55.939708 kcal Electronic energy + Delta-G solvation = -30234.685767 eV Core-core repulsion = 26424.394830 eV Total energy + Delta-G solvation = -3810.290937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.44080 -36.40576 -36.03813 -35.64341 -34.92587 -33.36441 -32.50080 -30.21618 -29.02470 -28.58368 -26.56613 -25.39865 -25.12926 -24.22104 -22.55013 -20.80507 -20.60653 -19.98720 -18.18766 -17.29323 -16.83079 -16.31058 -16.16550 -15.62683 -15.53766 -14.79661 -14.12037 -14.04699 -13.94186 -13.69650 -13.32192 -13.26014 -13.09010 -12.97533 -12.61806 -12.46104 -12.18783 -11.87320 -11.85530 -11.62775 -11.44114 -11.35160 -11.22074 -11.19827 -11.13938 -11.08414 -11.00778 -10.83578 -10.78513 -10.74113 -10.72598 -10.60743 -10.34678 -10.17201 -9.97343 -9.22104 -8.80659 -8.41459 -8.03875 -7.84523 -6.03714 -4.09754 1.41431 3.30644 3.37492 3.42227 3.60696 3.98190 4.28722 4.44117 4.55761 4.61233 4.86460 5.04155 5.10891 5.20109 5.24460 5.27865 5.29763 5.37353 5.45404 5.60547 5.62369 5.65541 5.69960 5.75502 5.78945 5.82131 5.88876 5.96169 5.99084 6.04917 6.11963 6.18178 6.22411 6.29787 6.46215 6.52004 6.71387 6.78031 6.90182 6.95569 7.09151 7.15316 7.22729 7.56722 7.68875 7.84777 8.10083 8.32957 8.92366 9.55629 11.02043 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.003946 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.364245 B = 7093.237815 C = 7331.584692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.036 3.964 3 N -0.503 5.503 4 C 0.045 3.955 5 C -0.141 4.141 6 C -0.121 4.121 7 C 0.052 3.948 8 H 0.055 0.945 9 C 0.146 3.854 10 N -1.011 6.011 11 C 0.096 3.904 12 S 2.774 3.226 13 O -0.981 6.981 14 O -0.958 6.958 15 N -0.996 5.996 16 C 0.098 3.902 17 C 0.267 3.733 18 H 0.055 0.945 19 C -0.146 4.146 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.009 0.991 49 H 0.091 0.909 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 4.462 17.141 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 N -0.228 5.228 4 C -0.082 4.082 5 C -0.179 4.179 6 C -0.160 4.160 7 C -0.058 4.058 8 H 0.073 0.927 9 C 0.019 3.981 10 N -0.848 5.848 11 C -0.050 4.050 12 S 2.783 3.217 13 O -0.965 6.965 14 O -0.941 6.941 15 N -0.838 5.838 16 C -0.049 4.049 17 C 0.164 3.836 18 H 0.073 0.927 19 C -0.206 4.206 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.028 0.972 49 H 0.110 0.890 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.469 4.381 17.006 18.715 hybrid contribution 0.194 -0.307 -0.309 0.477 sum 6.663 4.075 16.697 18.434 Atomic orbital electron populations 1.21844 0.94594 1.01460 1.03063 1.22450 0.96778 0.89301 1.00681 1.63531 1.12496 1.15463 1.31268 1.22818 0.96834 0.99150 0.89429 1.22772 0.96148 1.01534 0.97493 1.22683 0.98910 0.98701 0.95692 1.23049 0.88707 0.97657 0.96411 0.92740 1.21187 0.97007 0.91099 0.88820 1.58181 1.39977 1.20756 1.65877 1.21399 0.98125 0.83876 1.01635 1.02348 0.73234 0.73646 0.72431 1.93580 1.73404 1.43182 1.86292 1.93596 1.74233 1.58033 1.68273 1.57867 1.87920 1.13782 1.24195 1.21256 0.99331 0.80630 1.03651 1.18676 0.94049 0.88940 0.81922 0.92686 1.22109 0.96018 1.00975 1.01485 1.21351 1.13641 1.18284 1.02546 0.91983 1.24907 0.96221 0.94826 0.97940 1.69860 1.36546 1.21618 1.24952 0.86519 0.82229 0.77864 0.80963 1.20649 1.21107 1.19791 0.92841 0.91053 0.92420 0.90754 0.95128 0.90366 0.93083 0.90867 0.91906 0.90960 0.90131 0.90791 0.89842 0.93489 0.90741 0.91674 0.94843 0.90170 0.91856 0.94906 0.97235 0.89050 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.93 37.16 0.37 -1.91 16 2 C 0.04 0.53 4.30 -3.83 -0.02 0.51 16 3 N -0.50 -7.05 2.71 -223.37 -0.61 -7.66 16 4 C 0.05 0.53 6.20 -2.83 -0.02 0.51 16 5 C -0.14 -1.27 6.94 -24.90 -0.17 -1.44 16 6 C -0.12 -1.13 6.50 -24.59 -0.16 -1.29 16 7 C 0.05 0.62 2.81 -66.19 -0.19 0.43 16 8 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 9 C 0.15 1.86 5.24 -4.04 -0.02 1.84 16 10 N -1.01 -15.93 1.93 -121.76 -0.23 -16.17 16 11 C 0.10 1.36 9.96 59.84 0.60 1.95 16 12 S 2.77 56.41 4.58 -107.50 -0.49 55.92 16 13 O -0.98 -23.42 15.57 -57.17 -0.89 -24.31 16 14 O -0.96 -19.67 12.70 -57.17 -0.73 -20.40 16 15 N -1.00 -21.50 3.12 -115.85 -0.36 -21.86 16 16 C 0.10 1.82 9.65 59.84 0.58 2.40 16 17 C 0.27 6.70 2.62 -69.08 -0.18 6.52 16 18 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 19 C -0.15 -3.39 8.97 37.16 0.33 -3.05 16 20 C -0.52 -14.25 7.99 -34.44 -0.28 -14.52 16 21 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 23 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 24 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 28 H 0.05 0.69 7.09 -51.93 -0.37 0.33 16 29 H 0.07 1.29 7.14 -51.93 -0.37 0.91 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.19 4.42 -51.93 -0.23 0.96 16 32 H 0.03 0.39 7.98 -51.93 -0.41 -0.03 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.55 6.87 -51.93 -0.36 0.20 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.77 7.97 -51.93 -0.41 0.35 16 39 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 40 H 0.08 1.12 7.50 -51.93 -0.39 0.73 16 41 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 42 H 0.07 1.21 7.79 -51.93 -0.40 0.81 16 43 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 46 H 0.06 1.10 7.02 -51.92 -0.36 0.74 16 47 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 48 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 50 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -31.84 384.19 -9.99 -41.83 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.83 Total: 1.35 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 0.75 Total: -6.42 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.57 Total: -70.08 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.62 Total: -44.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 56.41 SS G_CDS: -0.49 Total: 55.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.84 -9.99 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.109 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds