Wall clock time and date at job start Tue Mar 31 2020 17:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47397 * 2 1 4 4 C 1.47448 * 110.99791 * 69.15887 * 3 2 1 5 5 C 1.54324 * 107.23220 * 123.25747 * 4 3 2 6 6 C 1.55142 * 103.01927 * 22.28355 * 5 4 3 7 7 C 1.47850 * 111.00231 * 190.00192 * 3 2 1 8 8 H 1.09000 * 110.37297 * 332.57857 * 7 3 2 9 9 C 1.52997 * 110.37353 * 94.80613 * 7 3 2 10 10 N 1.46505 * 109.47212 * 305.00051 * 9 7 3 11 11 C 1.46494 * 120.00080 * 275.00347 * 10 9 7 12 12 S 1.65596 * 119.99655 * 94.99926 * 10 9 7 13 13 O 1.42103 * 106.40201 * 203.53703 * 12 10 9 14 14 O 1.42095 * 106.40562 * 336.46073 * 12 10 9 15 15 N 1.65601 * 107.21751 * 90.00120 * 12 10 9 16 16 C 1.46496 * 120.00201 * 269.99717 * 15 12 10 17 17 C 1.46500 * 120.00119 * 90.00030 * 15 12 10 18 18 H 1.08998 * 109.47269 * 359.97438 * 17 15 12 19 19 C 1.53001 * 109.46822 * 239.99928 * 17 15 12 20 20 C 1.50699 * 109.47351 * 119.99789 * 17 15 12 21 21 H 1.07998 * 119.99997 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99747 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00173 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99598 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47057 * 90.00114 * 24 22 20 26 26 H 1.48501 * 109.46802 * 209.99844 * 24 22 20 27 27 H 1.48500 * 109.47260 * 329.99824 * 24 22 20 28 28 H 1.09000 * 109.46472 * 299.99649 * 1 2 3 29 29 H 1.09004 * 109.47244 * 59.99543 * 1 2 3 30 30 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47244 * 120.00457 * 2 1 3 33 33 H 1.08998 * 109.88714 * 242.66005 * 4 3 2 34 34 H 1.09000 * 109.88821 * 3.69112 * 4 3 2 35 35 H 1.09000 * 110.70182 * 140.66794 * 5 4 3 36 36 H 1.09000 * 110.70513 * 263.72813 * 5 4 3 37 37 H 1.08997 * 110.99438 * 206.25347 * 6 5 4 38 38 H 1.09002 * 110.98830 * 82.43565 * 6 5 4 39 39 H 1.09002 * 109.47153 * 185.00043 * 9 7 3 40 40 H 1.09001 * 109.46832 * 65.00234 * 9 7 3 41 41 H 1.08993 * 109.47522 * 90.00073 * 11 10 9 42 42 H 1.08998 * 109.46906 * 210.00311 * 11 10 9 43 43 H 1.09003 * 109.46940 * 329.99268 * 11 10 9 44 44 H 1.08999 * 109.47379 * 89.99390 * 16 15 12 45 45 H 1.08995 * 109.47807 * 210.00110 * 16 15 12 46 46 H 1.09012 * 109.47302 * 329.99992 * 16 15 12 47 47 H 1.08998 * 109.47616 * 299.99509 * 19 17 15 48 48 H 1.09003 * 109.46964 * 60.00005 * 19 17 15 49 49 H 1.09000 * 109.47302 * 179.97438 * 19 17 15 50 50 H 0.96997 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7341 2.0464 1.2865 5 6 3.0803 2.5445 1.8532 6 6 3.9771 2.6399 0.5908 7 6 3.4779 1.4314 -0.2397 8 1 3.9488 0.5110 0.1057 9 6 3.7666 1.6508 -1.7261 10 7 3.0895 0.6169 -2.5129 11 6 3.7330 -0.6822 -2.7236 12 16 1.5968 0.9168 -3.1640 13 8 0.9829 -0.3496 -3.3606 14 8 1.0160 1.9484 -2.3779 15 7 1.8393 1.5580 -4.6714 16 6 1.9633 3.0080 -4.8395 17 6 1.9297 0.6751 -5.8371 18 1 1.8154 -0.3608 -5.5180 19 6 3.2931 0.8542 -6.5078 20 6 0.8384 1.0228 -6.8165 21 1 0.1469 1.8218 -6.5932 22 6 0.7235 0.3215 -7.9981 23 7 1.5659 -0.6511 -8.2701 24 14 -0.6288 0.7530 -9.2124 25 1 -0.1326 1.7826 -10.1606 26 1 -1.0243 -0.4641 -9.9657 27 1 -1.8044 1.2834 -8.4763 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.0632 2.8907 1.1284 34 1 1.2791 1.3353 1.9760 35 1 2.9640 3.5235 2.3183 36 1 3.4879 1.8270 2.5653 37 1 5.0298 2.5274 0.8502 38 1 3.8054 3.5762 0.0598 39 1 4.8412 1.5940 -1.8998 40 1 3.4015 2.6331 -2.0260 41 1 3.4480 -1.3632 -1.9218 42 1 3.4143 -1.0944 -3.6810 43 1 4.8157 -0.5553 -2.7251 44 1 3.0105 3.2961 -4.7480 45 1 1.5928 3.2927 -5.8242 46 1 1.3788 3.5142 -4.0711 47 1 3.4079 1.8901 -6.8270 48 1 4.0824 0.6027 -5.7994 49 1 3.3607 0.1971 -7.3748 50 1 1.4853 -1.1442 -9.1015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330424226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:02 Heat of formation + Delta-G solvation = -76.499878 kcal Electronic energy + Delta-G solvation = -30235.577323 eV Core-core repulsion = 26424.394830 eV Total energy + Delta-G solvation = -3811.182493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.36726 -38.10858 -37.81924 -36.80080 -36.58874 -34.53586 -34.31330 -31.16336 -30.88924 -29.58820 -27.61819 -27.24721 -26.95511 -25.32263 -23.57883 -22.47888 -21.62726 -20.97581 -19.65209 -18.78286 -18.60122 -18.00493 -17.30971 -17.05457 -16.74316 -16.45551 -15.62302 -15.18322 -15.07478 -14.86216 -14.83812 -14.71077 -14.35891 -14.21409 -13.92783 -13.71822 -13.64324 -13.35774 -13.21327 -13.08609 -12.99797 -12.93483 -12.70176 -12.66627 -12.58097 -12.47539 -12.30834 -12.20037 -12.16101 -12.13243 -11.96578 -11.86432 -11.81805 -11.67866 -11.48153 -11.17044 -10.50921 -9.99551 -9.59343 -9.00517 -8.12242 -6.25935 -0.14735 1.40836 1.42841 1.52720 2.18797 2.42842 2.77058 3.02445 3.15347 3.58463 3.75691 3.79139 3.94083 4.07531 4.15547 4.22861 4.28706 4.30213 4.40637 4.50018 4.60980 4.63315 4.66901 4.74498 4.76195 4.79819 4.84173 4.87085 4.94488 4.98565 4.99379 5.03944 5.05190 5.08158 5.14469 5.18602 5.21902 5.26755 5.31182 5.45103 5.60009 5.62332 5.84069 5.93065 6.17635 6.23886 6.24897 6.30792 6.81502 7.42713 8.91963 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.003946 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.364245 B = 7093.237815 C = 7331.584692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.037 3.963 3 N -0.530 5.530 4 C 0.041 3.959 5 C -0.132 4.132 6 C -0.114 4.114 7 C 0.048 3.952 8 H 0.064 0.936 9 C 0.137 3.863 10 N -1.002 6.002 11 C 0.092 3.908 12 S 2.785 3.215 13 O -1.025 7.025 14 O -0.965 6.965 15 N -1.007 6.007 16 C 0.095 3.905 17 C 0.273 3.727 18 H 0.019 0.981 19 C -0.132 4.132 20 C -0.541 4.541 21 H 0.054 0.946 22 C 0.018 3.982 23 N -0.913 5.913 24 Si 0.954 3.046 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.276 1.276 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.034 0.966 49 H 0.066 0.934 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 5.615 18.629 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 N -0.255 5.255 4 C -0.087 4.087 5 C -0.171 4.171 6 C -0.153 4.153 7 C -0.061 4.061 8 H 0.082 0.918 9 C 0.011 3.989 10 N -0.843 5.843 11 C -0.053 4.053 12 S 2.795 3.205 13 O -1.009 7.009 14 O -0.949 6.949 15 N -0.848 5.848 16 C -0.051 4.051 17 C 0.169 3.831 18 H 0.037 0.963 19 C -0.191 4.191 20 C -0.580 4.580 21 H 0.072 0.928 22 C -0.182 4.182 23 N -0.552 5.552 24 Si 0.779 3.221 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.201 1.201 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.436 5.565 18.498 21.078 hybrid contribution -0.412 -0.663 -0.679 1.034 sum 8.024 4.902 17.819 20.148 Atomic orbital electron populations 1.21848 0.95644 1.01549 1.01993 1.22381 0.96004 0.90132 1.00639 1.63454 1.14179 1.14984 1.32929 1.22842 0.98362 0.98661 0.88803 1.22740 0.94300 1.02482 0.97551 1.22690 1.00339 0.97205 0.95061 1.23138 0.87655 0.99358 0.95993 0.91767 1.21552 0.98596 0.89645 0.89061 1.57774 1.38866 1.22042 1.65581 1.21542 1.00138 0.83148 1.00503 1.01762 0.74044 0.72576 0.72096 1.93513 1.75356 1.45253 1.86828 1.93575 1.75190 1.58079 1.68028 1.57828 1.88587 1.14661 1.23698 1.21400 1.01434 0.79039 1.03210 1.18337 0.94487 0.87750 0.82542 0.96347 1.21888 0.95670 1.00753 1.00838 1.21659 1.14503 1.18318 1.03563 0.92825 1.25643 0.98247 0.94759 0.99536 1.69972 1.37664 1.22157 1.25411 0.85622 0.79521 0.77950 0.78978 1.19221 1.20675 1.20054 0.91122 0.94745 0.91848 0.92694 0.93046 0.91824 0.92580 0.89544 0.90613 0.88335 0.90491 0.87263 0.90559 0.92523 0.93612 0.87828 0.91736 0.91439 0.91062 0.94139 0.94698 0.91543 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.93 71.98 0.71 -3.95 16 2 C 0.04 1.05 4.30 86.30 0.37 1.42 16 3 N -0.53 -14.15 2.71 -860.61 -2.33 -16.48 16 4 C 0.04 0.87 6.20 86.65 0.54 1.41 16 5 C -0.13 -1.94 6.94 31.78 0.22 -1.72 16 6 C -0.11 -1.70 6.50 31.98 0.21 -1.49 16 7 C 0.05 1.01 2.81 45.38 0.13 1.13 16 8 H 0.06 1.23 7.81 -2.39 -0.02 1.21 16 9 C 0.14 3.12 5.24 86.38 0.45 3.58 16 10 N -1.00 -30.46 1.93 -539.14 -1.04 -31.50 16 11 C 0.09 2.50 9.96 127.77 1.27 3.77 16 12 S 2.79 115.26 4.58 -56.49 -0.26 115.00 16 13 O -1.03 -51.40 15.57 -128.00 -1.99 -53.39 16 14 O -0.97 -40.22 12.70 -128.00 -1.63 -41.84 16 15 N -1.01 -43.92 3.12 -520.45 -1.62 -45.55 16 16 C 0.09 3.47 9.65 127.77 1.23 4.70 16 17 C 0.27 14.04 2.62 44.25 0.12 14.16 16 18 H 0.02 1.09 6.91 -2.39 -0.02 1.07 16 19 C -0.13 -6.10 8.97 71.98 0.65 -5.46 16 20 C -0.54 -30.44 7.99 25.60 0.20 -30.24 16 21 H 0.05 3.02 7.33 -2.91 -0.02 3.00 16 22 C 0.02 1.00 5.30 84.66 0.45 1.45 16 23 N -0.91 -52.22 11.32 21.45 0.24 -51.98 16 24 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H 0.07 1.83 7.09 -2.39 -0.02 1.82 16 29 H 0.03 1.28 7.14 -2.38 -0.02 1.27 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.76 4.42 -2.38 -0.01 1.75 16 32 H 0.05 1.21 7.98 -2.38 -0.02 1.19 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.11 6.87 -2.39 -0.02 1.10 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.22 7.97 -2.39 -0.02 1.20 16 39 H 0.11 1.74 7.96 -2.39 -0.02 1.72 16 40 H 0.08 1.87 7.50 -2.39 -0.02 1.85 16 41 H 0.06 1.42 7.17 -2.39 -0.02 1.41 16 42 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 43 H 0.10 1.99 7.94 -2.39 -0.02 1.97 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 2.62 7.02 -2.39 -0.02 2.60 16 46 H 0.07 2.46 7.02 -2.38 -0.02 2.44 16 47 H 0.04 1.75 7.67 -2.39 -0.02 1.74 16 48 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 50 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.50 384.19 0.85 -70.65 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.90 Total: 20.12 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.55 Total: -11.23 kcal Atomic # 7 Polarization: -140.75 SS G_CDS: -4.75 Total: -145.51 kcal Atomic # 8 Polarization: -91.62 SS G_CDS: -3.62 Total: -95.23 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 115.26 SS G_CDS: -0.26 Total: 115.00 kcal Total: -71.50 0.85 -70.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.845 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds