Wall clock time and date at job start Tue Mar 31 2020 17:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46761 * 2 1 4 4 C 1.47442 * 110.99969 * 74.68341 * 3 2 1 5 5 C 1.54318 * 107.23073 * 123.25841 * 4 3 2 6 6 C 1.55139 * 103.02369 * 22.28302 * 5 4 3 7 7 C 1.47844 * 110.99747 * 195.52584 * 3 2 1 8 8 H 1.09002 * 110.37561 * 332.46917 * 7 3 2 9 9 C 1.52998 * 110.37282 * 94.80657 * 7 3 2 10 10 N 1.46499 * 109.47378 * 302.21211 * 9 7 3 11 11 C 1.46496 * 119.99883 * 86.38900 * 10 9 7 12 12 S 1.65599 * 120.00214 * 266.39286 * 10 9 7 13 13 O 1.42106 * 106.40018 * 27.72280 * 12 10 9 14 14 O 1.42097 * 106.40573 * 160.63936 * 12 10 9 15 15 N 1.65598 * 107.21973 * 274.18252 * 12 10 9 16 16 C 1.46490 * 120.00314 * 274.03222 * 15 12 10 17 17 C 1.46507 * 119.99691 * 94.02824 * 15 12 10 18 18 H 1.08991 * 109.47242 * 354.74433 * 17 15 12 19 19 C 1.53005 * 109.46764 * 114.74537 * 17 15 12 20 20 C 1.50696 * 109.47028 * 234.74189 * 17 15 12 21 21 H 1.08001 * 120.00447 * 356.23163 * 20 17 15 22 22 C 1.37878 * 119.99846 * 176.23015 * 20 17 15 23 23 N 1.31515 * 120.00059 * 353.16657 * 22 20 17 24 24 Si 1.86805 * 120.00067 * 173.16596 * 22 20 17 25 25 H 1.48500 * 109.46964 * 64.99868 * 24 22 20 26 26 H 1.48498 * 109.47253 * 184.99642 * 24 22 20 27 27 H 1.48503 * 109.46964 * 304.99961 * 24 22 20 28 28 H 1.08997 * 109.47556 * 54.71023 * 1 2 3 29 29 H 1.08998 * 109.47064 * 174.70831 * 1 2 3 30 30 H 1.09006 * 109.47302 * 294.70713 * 1 2 3 31 31 H 1.09002 * 109.47112 * 119.99327 * 2 1 3 32 32 H 1.08997 * 109.47460 * 240.00013 * 2 1 3 33 33 H 1.08996 * 109.89009 * 242.66153 * 4 3 2 34 34 H 1.09000 * 109.89299 * 3.68986 * 4 3 2 35 35 H 1.09003 * 110.70588 * 140.66873 * 5 4 3 36 36 H 1.09007 * 110.70530 * 263.72349 * 5 4 3 37 37 H 1.08996 * 110.99005 * 82.43682 * 6 5 4 38 38 H 1.09000 * 110.99336 * 206.21880 * 6 5 4 39 39 H 1.08996 * 109.47224 * 62.21195 * 9 7 3 40 40 H 1.08997 * 109.47330 * 182.21186 * 9 7 3 41 41 H 1.09009 * 109.47386 * 90.00548 * 11 10 9 42 42 H 1.09007 * 109.47336 * 210.00454 * 11 10 9 43 43 H 1.08997 * 109.47432 * 330.00141 * 11 10 9 44 44 H 1.09004 * 109.47320 * 89.99731 * 16 15 12 45 45 H 1.08995 * 109.47762 * 209.99709 * 16 15 12 46 46 H 1.09006 * 109.47303 * 330.00118 * 16 15 12 47 47 H 1.08993 * 109.47153 * 179.97438 * 19 17 15 48 48 H 1.09002 * 109.46798 * 299.99640 * 19 17 15 49 49 H 1.09004 * 109.47402 * 59.99594 * 19 17 15 50 50 H 0.96996 * 120.00067 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8528 2.0044 1.3276 5 6 3.2456 2.4863 1.7854 6 6 4.0242 2.6235 0.4506 7 6 3.4500 1.4413 -0.3695 8 1 3.9494 0.5118 -0.0961 9 6 3.6029 1.7087 -1.8681 10 7 2.9112 0.6617 -2.6241 11 6 1.4822 0.7936 -2.9187 12 16 3.7445 -0.6710 -3.1455 13 8 4.8157 -0.8577 -2.2305 14 8 2.7724 -1.6708 -3.4184 15 7 4.4342 -0.2800 -4.5994 16 6 3.6692 -0.4370 -5.8388 17 6 5.8094 0.2229 -4.6461 18 1 6.1810 0.3596 -3.6306 19 6 6.6958 -0.7837 -5.3823 20 6 5.8372 1.5426 -5.3731 21 1 4.9331 1.9352 -5.8145 22 6 7.0170 2.2489 -5.4748 23 7 8.0856 1.8411 -4.8257 24 14 7.0975 3.7851 -6.5346 25 1 6.2120 4.8297 -5.9602 26 1 8.4945 4.2871 -6.5734 27 1 6.6499 3.4598 -7.9127 28 1 -0.3634 0.5937 -0.8388 29 1 -0.3633 -1.0233 -0.0948 30 1 -0.3634 0.4296 0.9336 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.1715 2.8523 1.2583 34 1 1.4614 1.2710 2.0325 35 1 3.1734 3.4496 2.2903 36 1 3.7151 1.7469 2.4343 37 1 3.8063 3.5760 -0.0324 38 1 5.0960 2.5049 0.6097 39 1 3.1688 2.6787 -2.1103 40 1 4.6606 1.7082 -2.1312 41 1 1.3535 1.3109 -3.8696 42 1 1.0309 -0.1967 -2.9799 43 1 0.9990 1.3648 -2.1261 44 1 3.1308 0.4862 -6.0529 45 1 4.3501 -0.6593 -6.6604 46 1 2.9574 -1.2548 -5.7254 47 1 7.7189 -0.4094 -5.4174 48 1 6.6757 -1.7383 -4.8564 49 1 6.3242 -0.9205 -6.3979 50 1 8.9155 2.3382 -4.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330424235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:09 Heat of formation + Delta-G solvation = -64.048552 kcal Electronic energy + Delta-G solvation = -30029.438910 eV Core-core repulsion = 26218.796347 eV Total energy + Delta-G solvation = -3810.642563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.42963 -36.71534 -36.10317 -35.49967 -35.19049 -33.48851 -32.55628 -30.09613 -29.14119 -28.67858 -26.51831 -25.42963 -25.15987 -24.03139 -22.52796 -20.75412 -20.72293 -20.16428 -18.17431 -17.03415 -16.93717 -16.40670 -16.25099 -15.76379 -15.61469 -14.85716 -14.26451 -14.08793 -13.85073 -13.55834 -13.47629 -13.23557 -13.18092 -12.95678 -12.69209 -12.45636 -12.15975 -11.90342 -11.77617 -11.70949 -11.67167 -11.43797 -11.39478 -11.26456 -11.18333 -11.13347 -10.99439 -10.97091 -10.87088 -10.82967 -10.61932 -10.55436 -10.47144 -10.30851 -10.01099 -9.28814 -8.76464 -8.45110 -8.14162 -7.92244 -6.10741 -4.16229 1.27168 3.25947 3.32085 3.33671 3.51156 3.96259 4.11230 4.36394 4.63799 4.69386 4.95175 4.98826 5.11584 5.20515 5.21209 5.29176 5.36769 5.49671 5.51806 5.56553 5.71676 5.73853 5.77886 5.80334 5.82356 5.92784 5.96752 5.98536 6.04634 6.13113 6.19895 6.22214 6.29687 6.34714 6.38599 6.49563 6.66050 6.79263 6.81542 6.98650 7.06195 7.09201 7.17529 7.48018 7.64474 7.76641 7.96830 8.26038 8.86988 9.49198 10.96242 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.004824 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.423554 B = 5802.563841 C = 6877.638848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.042 3.958 5 C -0.142 4.142 6 C -0.122 4.122 7 C 0.050 3.950 8 H 0.065 0.935 9 C 0.148 3.852 10 N -1.002 6.002 11 C 0.086 3.914 12 S 2.775 3.225 13 O -0.980 6.980 14 O -1.000 7.000 15 N -0.991 5.991 16 C 0.102 3.898 17 C 0.267 3.733 18 H 0.062 0.938 19 C -0.142 4.142 20 C -0.525 4.525 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.894 3.106 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.014 0.986 49 H 0.034 0.966 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 0.617 8.870 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 N -0.243 5.243 4 C -0.085 4.085 5 C -0.180 4.180 6 C -0.161 4.161 7 C -0.060 4.060 8 H 0.083 0.917 9 C 0.022 3.978 10 N -0.840 5.840 11 C -0.060 4.060 12 S 2.785 3.215 13 O -0.964 6.964 14 O -0.984 6.984 15 N -0.833 5.833 16 C -0.045 4.045 17 C 0.164 3.836 18 H 0.080 0.920 19 C -0.202 4.202 20 C -0.564 4.564 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.034 0.966 49 H 0.053 0.947 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.314 0.085 8.979 15.240 hybrid contribution 0.592 0.810 -0.276 1.041 sum -11.722 0.896 8.703 14.627 Atomic orbital electron populations 1.21817 0.94858 1.01535 1.02139 1.22356 0.96162 0.89295 1.00833 1.63510 1.17734 1.17165 1.25938 1.22844 0.96995 0.99141 0.89567 1.22765 0.96012 1.01507 0.97718 1.22686 1.00039 0.98607 0.94736 1.23162 0.87555 0.98744 0.96524 0.91669 1.21180 0.97466 0.91245 0.87931 1.57765 1.18371 1.39489 1.68361 1.21669 0.80617 1.02443 1.01291 1.02045 0.72465 0.73415 0.73541 1.93576 1.54911 1.85159 1.62721 1.93504 1.62453 1.56567 1.85854 1.57734 1.24372 1.81098 1.20133 1.21217 0.95516 0.99634 0.88099 1.18716 0.74331 0.92035 0.98483 0.92007 1.22020 1.02876 0.96683 0.98625 1.21290 0.95270 1.03993 1.35861 0.91958 1.24920 0.95710 0.97567 0.95477 1.69932 1.01582 1.40121 1.40774 0.86640 0.77018 0.83094 0.81109 1.20348 1.21299 1.20210 0.91527 0.92471 0.93120 0.95001 0.90930 0.90771 0.93058 0.90920 0.91712 0.90258 0.90324 0.90129 0.89065 0.93826 0.91296 0.89109 0.93890 0.90778 0.92320 0.90155 0.96644 0.94683 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.83 37.16 0.37 -1.14 16 2 C 0.04 0.53 4.05 -3.82 -0.02 0.52 16 3 N -0.52 -6.50 3.43 -223.38 -0.77 -7.27 16 4 C 0.04 0.44 6.36 -2.84 -0.02 0.43 16 5 C -0.14 -1.43 6.94 -24.91 -0.17 -1.60 16 6 C -0.12 -1.46 6.50 -24.59 -0.16 -1.62 16 7 C 0.05 0.71 2.76 -66.19 -0.18 0.53 16 8 H 0.07 1.07 7.64 -51.93 -0.40 0.68 16 9 C 0.15 2.37 5.11 -4.04 -0.02 2.35 16 10 N -1.00 -16.62 2.13 -121.76 -0.26 -16.87 16 11 C 0.09 1.19 8.60 59.84 0.51 1.70 16 12 S 2.78 55.67 5.86 -107.50 -0.63 55.04 16 13 O -0.98 -22.31 15.63 -57.17 -0.89 -23.20 16 14 O -1.00 -20.67 15.36 -57.17 -0.88 -21.55 16 15 N -0.99 -20.87 3.12 -115.86 -0.36 -21.23 16 16 C 0.10 1.85 9.67 59.84 0.58 2.43 16 17 C 0.27 6.51 2.48 -69.08 -0.17 6.34 16 18 H 0.06 1.67 6.90 -51.93 -0.36 1.31 16 19 C -0.14 -3.38 9.08 37.16 0.34 -3.04 16 20 C -0.52 -13.34 8.29 -34.44 -0.29 -13.63 16 21 H 0.06 1.56 7.27 -52.49 -0.38 1.18 16 22 C 0.07 1.72 5.23 -17.82 -0.09 1.63 16 23 N -0.89 -24.14 11.92 55.43 0.66 -23.48 16 24 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.47 7.60 -51.93 -0.39 0.07 16 31 H 0.03 0.40 7.81 -51.93 -0.41 0.00 16 32 H 0.07 1.08 5.52 -51.93 -0.29 0.80 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.51 7.12 -51.93 -0.37 0.14 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 40 H 0.09 1.67 7.77 -51.93 -0.40 1.27 16 41 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.07 0.96 6.94 -51.92 -0.36 0.60 16 43 H 0.09 1.14 4.99 -51.93 -0.26 0.88 16 44 H 0.04 0.73 7.98 -51.93 -0.41 0.31 16 45 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 46 H 0.06 0.98 7.06 -51.93 -0.37 0.61 16 47 H 0.08 2.05 6.65 -51.93 -0.35 1.70 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.03 0.77 6.88 -51.93 -0.36 0.41 16 50 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -29.53 386.24 -10.38 -39.91 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.73 Total: 2.74 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 0.68 Total: -5.11 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.73 Total: -68.86 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.77 Total: -44.75 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.63 Total: 55.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.53 -10.38 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.136 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds