Wall clock time and date at job start Tue Mar 31 2020 17:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.46761 * 2 1 4 4 C 1.47442 * 110.99969 * 74.68341 * 3 2 1 5 5 C 1.54318 * 107.23073 * 123.25841 * 4 3 2 6 6 C 1.55139 * 103.02369 * 22.28302 * 5 4 3 7 7 C 1.47844 * 110.99747 * 195.52584 * 3 2 1 8 8 H 1.09002 * 110.37561 * 332.46917 * 7 3 2 9 9 C 1.52998 * 110.37282 * 94.80657 * 7 3 2 10 10 N 1.46499 * 109.47378 * 302.21211 * 9 7 3 11 11 C 1.46496 * 119.99883 * 86.38900 * 10 9 7 12 12 S 1.65599 * 120.00214 * 266.39286 * 10 9 7 13 13 O 1.42106 * 106.40018 * 27.72280 * 12 10 9 14 14 O 1.42097 * 106.40573 * 160.63936 * 12 10 9 15 15 N 1.65598 * 107.21973 * 274.18252 * 12 10 9 16 16 C 1.46490 * 120.00314 * 274.03222 * 15 12 10 17 17 C 1.46507 * 119.99691 * 94.02824 * 15 12 10 18 18 H 1.08991 * 109.47242 * 354.74433 * 17 15 12 19 19 C 1.53005 * 109.46764 * 114.74537 * 17 15 12 20 20 C 1.50696 * 109.47028 * 234.74189 * 17 15 12 21 21 H 1.08001 * 120.00447 * 356.23163 * 20 17 15 22 22 C 1.37878 * 119.99846 * 176.23015 * 20 17 15 23 23 N 1.31515 * 120.00059 * 353.16657 * 22 20 17 24 24 Si 1.86805 * 120.00067 * 173.16596 * 22 20 17 25 25 H 1.48500 * 109.46964 * 64.99868 * 24 22 20 26 26 H 1.48498 * 109.47253 * 184.99642 * 24 22 20 27 27 H 1.48503 * 109.46964 * 304.99961 * 24 22 20 28 28 H 1.08997 * 109.47556 * 54.71023 * 1 2 3 29 29 H 1.08998 * 109.47064 * 174.70831 * 1 2 3 30 30 H 1.09006 * 109.47302 * 294.70713 * 1 2 3 31 31 H 1.09002 * 109.47112 * 119.99327 * 2 1 3 32 32 H 1.08997 * 109.47460 * 240.00013 * 2 1 3 33 33 H 1.08996 * 109.89009 * 242.66153 * 4 3 2 34 34 H 1.09000 * 109.89299 * 3.68986 * 4 3 2 35 35 H 1.09003 * 110.70588 * 140.66873 * 5 4 3 36 36 H 1.09007 * 110.70530 * 263.72349 * 5 4 3 37 37 H 1.08996 * 110.99005 * 82.43682 * 6 5 4 38 38 H 1.09000 * 110.99336 * 206.21880 * 6 5 4 39 39 H 1.08996 * 109.47224 * 62.21195 * 9 7 3 40 40 H 1.08997 * 109.47330 * 182.21186 * 9 7 3 41 41 H 1.09009 * 109.47386 * 90.00548 * 11 10 9 42 42 H 1.09007 * 109.47336 * 210.00454 * 11 10 9 43 43 H 1.08997 * 109.47432 * 330.00141 * 11 10 9 44 44 H 1.09004 * 109.47320 * 89.99731 * 16 15 12 45 45 H 1.08995 * 109.47762 * 209.99709 * 16 15 12 46 46 H 1.09006 * 109.47303 * 330.00118 * 16 15 12 47 47 H 1.08993 * 109.47153 * 179.97438 * 19 17 15 48 48 H 1.09002 * 109.46798 * 299.99640 * 19 17 15 49 49 H 1.09004 * 109.47402 * 59.99594 * 19 17 15 50 50 H 0.96996 * 120.00067 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8528 2.0044 1.3276 5 6 3.2456 2.4863 1.7854 6 6 4.0242 2.6235 0.4506 7 6 3.4500 1.4413 -0.3695 8 1 3.9494 0.5118 -0.0961 9 6 3.6029 1.7087 -1.8681 10 7 2.9112 0.6617 -2.6241 11 6 1.4822 0.7936 -2.9187 12 16 3.7445 -0.6710 -3.1455 13 8 4.8157 -0.8577 -2.2305 14 8 2.7724 -1.6708 -3.4184 15 7 4.4342 -0.2800 -4.5994 16 6 3.6692 -0.4370 -5.8388 17 6 5.8094 0.2229 -4.6461 18 1 6.1810 0.3596 -3.6306 19 6 6.6958 -0.7837 -5.3823 20 6 5.8372 1.5426 -5.3731 21 1 4.9331 1.9352 -5.8145 22 6 7.0170 2.2489 -5.4748 23 7 8.0856 1.8411 -4.8257 24 14 7.0975 3.7851 -6.5346 25 1 6.2120 4.8297 -5.9602 26 1 8.4945 4.2871 -6.5734 27 1 6.6499 3.4598 -7.9127 28 1 -0.3634 0.5937 -0.8388 29 1 -0.3633 -1.0233 -0.0948 30 1 -0.3634 0.4296 0.9336 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.1715 2.8523 1.2583 34 1 1.4614 1.2710 2.0325 35 1 3.1734 3.4496 2.2903 36 1 3.7151 1.7469 2.4343 37 1 3.8063 3.5760 -0.0324 38 1 5.0960 2.5049 0.6097 39 1 3.1688 2.6787 -2.1103 40 1 4.6606 1.7082 -2.1312 41 1 1.3535 1.3109 -3.8696 42 1 1.0309 -0.1967 -2.9799 43 1 0.9990 1.3648 -2.1261 44 1 3.1308 0.4862 -6.0529 45 1 4.3501 -0.6593 -6.6604 46 1 2.9574 -1.2548 -5.7254 47 1 7.7189 -0.4094 -5.4174 48 1 6.6757 -1.7383 -4.8564 49 1 6.3242 -0.9205 -6.3979 50 1 8.9155 2.3382 -4.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330424235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:08 Heat of formation + Delta-G solvation = -82.782061 kcal Electronic energy + Delta-G solvation = -30030.251256 eV Core-core repulsion = 26218.796347 eV Total energy + Delta-G solvation = -3811.454909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45765 -38.40055 -37.87278 -36.93155 -36.70430 -34.48158 -34.42916 -31.19090 -30.97411 -29.58420 -27.67847 -27.18715 -26.96207 -25.21417 -23.52279 -22.57105 -21.73216 -21.22069 -19.73930 -18.63695 -18.45178 -18.25259 -17.44510 -17.12012 -16.84048 -16.55413 -15.73683 -15.21584 -15.09232 -14.94138 -14.76815 -14.68556 -14.47962 -14.17080 -14.00865 -13.74732 -13.59469 -13.45521 -13.39838 -13.26456 -13.02823 -12.88295 -12.77087 -12.67613 -12.65977 -12.49519 -12.40385 -12.26046 -12.22336 -12.16479 -12.00345 -11.88609 -11.84642 -11.71176 -11.50087 -11.17744 -10.46073 -10.02361 -9.65325 -9.19299 -8.09273 -6.21287 -0.31914 1.47505 1.49214 1.56291 1.99550 2.46921 2.53968 2.95326 3.20950 3.37331 3.68327 3.71953 3.97995 4.03159 4.16052 4.19067 4.29522 4.35232 4.43611 4.56723 4.62971 4.64852 4.70744 4.74703 4.79456 4.83479 4.89420 4.91689 4.92591 4.97363 5.01379 5.04524 5.06786 5.10520 5.11662 5.16074 5.20860 5.27933 5.38111 5.42435 5.54347 5.65230 5.75435 5.87221 6.04293 6.07116 6.18592 6.29699 6.87326 7.47587 8.97487 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.004824 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.423554 B = 5802.563841 C = 6877.638848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 N -0.516 5.516 4 C 0.041 3.959 5 C -0.134 4.134 6 C -0.122 4.122 7 C 0.051 3.949 8 H 0.034 0.966 9 C 0.150 3.850 10 N -0.995 5.995 11 C 0.084 3.916 12 S 2.785 3.215 13 O -1.014 7.014 14 O -1.007 7.007 15 N -1.000 6.000 16 C 0.097 3.903 17 C 0.274 3.726 18 H 0.027 0.973 19 C -0.137 4.137 20 C -0.527 4.527 21 H 0.068 0.932 22 C 0.020 3.980 23 N -0.918 5.918 24 Si 0.956 3.044 25 H -0.271 1.271 26 H -0.290 1.290 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.019 0.981 49 H 0.049 0.951 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 2.213 8.846 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 N -0.240 5.240 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.161 4.161 7 C -0.060 4.060 8 H 0.052 0.948 9 C 0.023 3.977 10 N -0.835 5.835 11 C -0.061 4.061 12 S 2.795 3.205 13 O -0.998 6.998 14 O -0.991 6.991 15 N -0.841 5.841 16 C -0.049 4.049 17 C 0.169 3.831 18 H 0.045 0.955 19 C -0.197 4.197 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.781 3.219 25 H -0.196 1.196 26 H -0.215 1.215 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.707 1.666 8.944 17.293 hybrid contribution 1.278 0.275 -0.221 1.326 sum -13.429 1.942 8.722 16.130 Atomic orbital electron populations 1.21770 0.92620 1.02165 1.03092 1.22390 0.97943 0.89224 0.99454 1.63518 1.15979 1.17014 1.27529 1.22947 0.97449 0.99706 0.88492 1.22751 0.95289 1.02663 0.96569 1.22702 0.99825 0.97904 0.95682 1.23017 0.88934 0.98366 0.95636 0.94765 1.21196 0.95720 0.91687 0.89071 1.57501 1.19334 1.38648 1.68030 1.21860 0.78653 1.02946 1.02593 1.01589 0.71993 0.73889 0.73031 1.93527 1.56596 1.85985 1.63735 1.93482 1.62246 1.57404 1.85923 1.57675 1.23604 1.81194 1.21600 1.21407 0.95575 1.01046 0.86865 1.18388 0.76028 0.92242 0.96425 0.95534 1.21925 1.01639 0.96634 0.99481 1.21500 0.95416 1.04305 1.35450 0.91429 1.25658 0.95410 1.00419 0.96479 1.70067 1.02079 1.41471 1.42106 0.85652 0.76819 0.79760 0.79625 1.19593 1.21545 1.19515 0.91128 0.91962 0.91636 0.95447 0.93454 0.89105 0.92219 0.88660 0.91991 0.89285 0.91151 0.88329 0.92330 0.92512 0.91319 0.87401 0.92392 0.90789 0.90774 0.92308 0.96222 0.93239 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.83 71.98 0.71 -1.85 16 2 C 0.04 0.94 4.05 86.30 0.35 1.29 16 3 N -0.52 -12.18 3.43 -860.64 -2.95 -15.14 16 4 C 0.04 0.76 6.36 86.65 0.55 1.31 16 5 C -0.13 -2.45 6.94 31.77 0.22 -2.23 16 6 C -0.12 -2.86 6.50 31.98 0.21 -2.65 16 7 C 0.05 1.46 2.76 45.39 0.13 1.59 16 8 H 0.03 1.19 7.64 -2.39 -0.02 1.17 16 9 C 0.15 4.83 5.11 86.38 0.44 5.27 16 10 N -1.00 -32.85 2.13 -539.13 -1.15 -34.00 16 11 C 0.08 2.19 8.60 127.77 1.10 3.29 16 12 S 2.78 113.69 5.86 -56.49 -0.33 113.36 16 13 O -1.01 -48.55 15.63 -128.00 -2.00 -50.55 16 14 O -1.01 -41.47 15.36 -128.00 -1.97 -43.44 16 15 N -1.00 -42.26 3.12 -520.46 -1.62 -43.88 16 16 C 0.10 3.39 9.67 127.77 1.24 4.63 16 17 C 0.27 13.61 2.48 44.24 0.11 13.72 16 18 H 0.03 1.52 6.90 -2.39 -0.02 1.50 16 19 C -0.14 -6.63 9.08 71.98 0.65 -5.98 16 20 C -0.53 -26.84 8.29 25.60 0.21 -26.63 16 21 H 0.07 3.31 7.27 -2.91 -0.02 3.28 16 22 C 0.02 1.06 5.23 84.65 0.44 1.50 16 23 N -0.92 -51.11 11.92 21.45 0.26 -50.86 16 24 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 28 H 0.07 1.24 6.82 -2.39 -0.02 1.22 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.02 7.60 -2.38 -0.02 1.00 16 31 H 0.03 0.68 7.81 -2.39 -0.02 0.67 16 32 H 0.05 1.41 5.52 -2.39 -0.01 1.39 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.02 7.12 -2.39 -0.02 1.00 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 2.78 8.04 -2.39 -0.02 2.77 16 40 H 0.06 2.27 7.77 -2.39 -0.02 2.25 16 41 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.07 1.81 6.94 -2.38 -0.02 1.79 16 43 H 0.11 2.45 4.99 -2.39 -0.01 2.44 16 44 H 0.06 1.84 7.98 -2.39 -0.02 1.83 16 45 H 0.07 2.58 6.72 -2.39 -0.02 2.56 16 46 H 0.07 2.36 7.06 -2.38 -0.02 2.34 16 47 H 0.06 3.08 6.65 -2.39 -0.02 3.06 16 48 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 2.18 6.88 -2.38 -0.02 2.17 16 50 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.10 386.24 -0.48 -64.58 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.91 Total: 23.49 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 6.36 Total: -6.74 kcal Atomic # 7 Polarization: -138.40 SS G_CDS: -5.47 Total: -143.87 kcal Atomic # 8 Polarization: -90.02 SS G_CDS: -3.97 Total: -93.99 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 113.69 SS G_CDS: -0.33 Total: 113.36 kcal Total: -64.10 -0.48 -64.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds