Wall clock time and date at job start Tue Mar 31 2020 17:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46834 * 2 1 4 4 C 1.47840 * 111.00203 * 55.44069 * 3 2 1 5 5 C 1.54910 * 104.79494 * 146.36237 * 4 3 2 6 6 C 1.55140 * 101.65222 * 322.92997 * 5 4 3 7 7 C 1.47445 * 110.99678 * 176.28497 * 3 2 1 8 8 H 1.09006 * 109.88618 * 117.16854 * 7 3 2 9 9 C 1.53003 * 109.88871 * 356.15062 * 7 3 2 10 10 N 1.46500 * 109.46856 * 177.89379 * 9 7 3 11 11 C 1.46503 * 119.99672 * 294.03927 * 10 9 7 12 12 S 1.65604 * 120.00248 * 114.04558 * 10 9 7 13 13 O 1.42101 * 106.39728 * 202.85796 * 12 10 9 14 14 O 1.42102 * 106.39979 * 335.77341 * 12 10 9 15 15 N 1.65593 * 107.21689 * 89.31643 * 12 10 9 16 16 C 1.46505 * 120.00131 * 269.99486 * 15 12 10 17 17 C 1.46497 * 120.00114 * 90.00511 * 15 12 10 18 18 H 1.09003 * 109.47365 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.47582 * 119.99370 * 17 15 12 20 20 C 1.50701 * 109.47017 * 239.99621 * 17 15 12 21 21 H 1.08000 * 119.99989 * 359.97438 * 20 17 15 22 22 C 1.37880 * 120.00240 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00054 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 120.00175 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47091 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46782 * 120.00061 * 24 22 20 27 27 H 1.48497 * 109.47471 * 240.00128 * 24 22 20 28 28 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46866 * 300.00059 * 1 2 3 30 30 H 1.09000 * 109.47345 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.46866 * 239.99941 * 2 1 3 32 32 H 1.09000 * 109.47345 * 119.99845 * 2 1 3 33 33 H 1.08995 * 110.37131 * 265.18963 * 4 3 2 34 34 H 1.08998 * 110.37120 * 27.53758 * 4 3 2 35 35 H 1.08998 * 110.98832 * 81.01785 * 5 4 3 36 36 H 1.08996 * 110.98956 * 204.80264 * 5 4 3 37 37 H 1.08992 * 110.70736 * 277.27137 * 6 5 4 38 38 H 1.09003 * 110.70362 * 154.03530 * 6 5 4 39 39 H 1.09002 * 109.46364 * 297.88459 * 9 7 3 40 40 H 1.08999 * 109.47563 * 57.88675 * 9 7 3 41 41 H 1.09000 * 109.46923 * 95.09617 * 11 10 9 42 42 H 1.09000 * 109.47119 * 215.09342 * 11 10 9 43 43 H 1.08998 * 109.47141 * 335.08918 * 11 10 9 44 44 H 1.08996 * 109.46607 * 90.00315 * 16 15 12 45 45 H 1.08999 * 109.47316 * 210.00839 * 16 15 12 46 46 H 1.09005 * 109.46950 * 330.00859 * 16 15 12 47 47 H 1.09006 * 109.47233 * 59.99959 * 19 17 15 48 48 H 1.09003 * 109.47389 * 179.97438 * 19 17 15 49 49 H 1.08994 * 109.47356 * 300.00358 * 19 17 15 50 50 H 0.96996 * 120.00018 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.4581 2.1456 1.1366 5 6 2.5790 3.1344 1.5434 6 6 3.8507 2.2723 1.3279 7 6 3.4908 1.4253 0.0892 8 1 3.9044 1.8835 -0.8093 9 6 4.0416 0.0070 0.2504 10 7 5.5054 0.0529 0.2876 11 6 6.2554 0.4716 -0.8992 12 16 6.3122 -0.3686 1.6710 13 8 7.5837 0.2621 1.6018 14 8 5.4020 -0.1673 2.7435 15 7 6.5942 -1.9987 1.5966 16 6 5.6115 -2.9378 2.1432 17 6 7.8263 -2.5018 0.9843 18 1 8.4287 -1.6622 0.6374 19 6 8.6181 -3.3055 2.0177 20 6 7.4808 -3.3884 -0.1843 21 1 6.4469 -3.5603 -0.4446 22 6 8.4847 -3.9802 -0.9212 23 7 9.7439 -3.7713 -0.6040 24 14 8.0565 -5.0798 -2.3692 25 1 6.5805 -5.1527 -2.5159 26 1 8.6496 -4.5183 -3.6095 27 1 8.5988 -6.4420 -2.1339 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5665 2.6898 0.8255 34 1 1.2252 1.4750 1.9638 35 1 2.5845 4.0079 0.8915 36 1 2.4791 3.4297 2.5878 37 1 4.0340 1.6333 2.1917 38 1 4.7150 2.9046 1.1246 39 1 3.6679 -0.4243 1.1791 40 1 3.7184 -0.6061 -0.5909 41 1 6.4812 1.5357 -0.8296 42 1 7.1853 -0.0939 -0.9596 43 1 5.6579 0.2844 -1.7914 44 1 4.8978 -3.2103 1.3658 45 1 6.1224 -3.8330 2.4976 46 1 5.0831 -2.4685 2.9732 47 1 8.0156 -4.1451 2.3644 48 1 9.5347 -3.6802 1.5620 49 1 8.8680 -2.6643 2.8629 50 1 10.4501 -4.1879 -1.1221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330424241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:12 Heat of formation + Delta-G solvation = -61.311058 kcal Electronic energy + Delta-G solvation = -29701.015183 eV Core-core repulsion = 25890.491326 eV Total energy + Delta-G solvation = -3810.523857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.80603 -36.77465 -36.17316 -35.73619 -35.27362 -33.40003 -32.62897 -30.33061 -29.10431 -28.63821 -26.56192 -25.61088 -25.16944 -24.05443 -23.32872 -21.03277 -20.70015 -19.41201 -18.36875 -17.37977 -16.96666 -16.48908 -16.04199 -15.94352 -15.58505 -15.01493 -14.75522 -14.39290 -14.08863 -13.59482 -13.47388 -13.28324 -13.11817 -12.94631 -12.81361 -12.45726 -12.40203 -12.05759 -11.96529 -11.82374 -11.60005 -11.42171 -11.38438 -11.30499 -11.23179 -11.17506 -11.12628 -11.04830 -11.02391 -10.89292 -10.85046 -10.60763 -10.45642 -10.29270 -10.06157 -9.31301 -8.85225 -8.51995 -8.26954 -7.96727 -6.12540 -4.21134 1.17729 3.21117 3.29777 3.31560 3.38714 3.85511 4.09678 4.32754 4.56201 4.62671 4.75372 4.87837 4.97892 5.05263 5.12208 5.17858 5.22150 5.31742 5.38862 5.43931 5.54476 5.64667 5.65960 5.74788 5.81334 5.82911 5.85158 5.92183 5.96621 6.02908 6.05764 6.12260 6.19269 6.26218 6.28802 6.39011 6.58008 6.71048 6.80490 6.85888 6.95596 7.02165 7.07232 7.46473 7.60313 7.74499 8.01064 8.22905 8.82764 9.45645 10.92441 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.004188 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.688864 B = 6684.244796 C = 7439.715887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.033 3.967 3 N -0.521 5.521 4 C 0.041 3.959 5 C -0.129 4.129 6 C -0.151 4.151 7 C 0.061 3.939 8 H 0.091 0.909 9 C 0.109 3.891 10 N -1.005 6.005 11 C 0.099 3.901 12 S 2.779 3.221 13 O -0.978 6.978 14 O -0.997 6.997 15 N -0.991 5.991 16 C 0.100 3.900 17 C 0.267 3.733 18 H 0.058 0.942 19 C -0.146 4.146 20 C -0.524 4.524 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.887 5.887 24 Si 0.896 3.104 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.094 0.906 49 H 0.012 0.988 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 8.352 1.507 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 N -0.246 5.246 4 C -0.086 4.086 5 C -0.167 4.167 6 C -0.189 4.189 7 C -0.049 4.049 8 H 0.109 0.891 9 C -0.018 4.018 10 N -0.843 5.843 11 C -0.046 4.046 12 S 2.789 3.211 13 O -0.962 6.962 14 O -0.981 6.981 15 N -0.833 5.833 16 C -0.047 4.047 17 C 0.164 3.836 18 H 0.075 0.925 19 C -0.206 4.206 20 C -0.563 4.563 21 H 0.081 0.919 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.724 3.276 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.112 0.888 49 H 0.031 0.969 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.376 9.109 1.659 17.099 hybrid contribution 0.014 -1.416 -0.505 1.503 sum -14.362 7.693 1.154 16.333 Atomic orbital electron populations 1.21839 0.95021 1.01703 1.02246 1.22400 0.95830 0.89826 1.01455 1.63873 1.05606 1.12758 1.42372 1.23059 0.97953 0.95669 0.91952 1.22681 0.94494 0.98101 1.01396 1.23024 0.98188 0.98878 0.98804 1.22791 0.87301 0.95771 0.99034 0.89114 1.21916 0.79829 0.96970 1.03090 1.57887 1.13683 1.82234 1.30521 1.21389 0.96608 0.99492 0.87142 1.01949 0.72702 0.73519 0.72924 1.93579 1.40963 1.74955 1.86653 1.93497 1.66087 1.86018 1.52503 1.57744 1.29583 1.23082 1.72870 1.21246 0.91537 0.94824 0.97062 1.18744 0.78917 0.95172 0.90782 0.92450 1.22071 1.02722 0.98718 0.97069 1.21406 0.93253 1.29271 1.12383 0.91949 1.24928 0.94918 0.96447 0.97548 1.69888 0.98892 1.43939 1.39790 0.86487 0.78477 0.80355 0.82314 1.19854 1.20950 1.20997 0.92242 0.92762 0.91994 0.90135 0.93965 0.90381 0.93393 0.90878 0.90903 0.89533 0.90957 0.89649 0.90615 0.93235 0.90241 0.91275 0.93989 0.90597 0.92215 0.94815 0.88794 0.96869 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.72 37.16 0.36 -0.95 16 2 C 0.03 0.34 4.46 -3.82 -0.02 0.33 16 3 N -0.52 -5.95 5.27 -223.34 -1.18 -7.13 16 4 C 0.04 0.43 5.34 -2.30 -0.01 0.41 16 5 C -0.13 -1.35 7.08 -24.59 -0.17 -1.52 16 6 C -0.15 -1.95 6.21 -24.91 -0.15 -2.10 16 7 C 0.06 0.76 3.48 -66.72 -0.23 0.53 16 8 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 9 C 0.11 1.50 3.72 -4.04 -0.02 1.49 16 10 N -1.00 -16.31 3.07 -121.75 -0.37 -16.68 16 11 C 0.10 1.51 9.66 59.85 0.58 2.09 16 12 S 2.78 54.58 6.05 -107.50 -0.65 53.93 16 13 O -0.98 -22.30 15.85 -57.17 -0.91 -23.21 16 14 O -1.00 -19.60 13.78 -57.17 -0.79 -20.39 16 15 N -0.99 -20.49 3.12 -115.85 -0.36 -20.85 16 16 C 0.10 1.77 9.90 59.85 0.59 2.36 16 17 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 18 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 19 C -0.15 -3.47 8.95 37.16 0.33 -3.13 16 20 C -0.52 -13.23 8.37 -34.44 -0.29 -13.52 16 21 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 22 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 23 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 24 Si 0.90 20.14 29.54 -169.99 -5.02 15.11 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.45 6.82 -51.93 -0.35 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.84 6.90 -51.93 -0.36 0.48 16 32 H 0.04 0.47 6.33 -51.93 -0.33 0.14 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.50 7.40 -51.93 -0.38 0.11 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.30 6.13 -51.93 -0.32 0.99 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.22 5.65 -51.93 -0.29 0.93 16 40 H 0.08 0.97 6.55 -51.93 -0.34 0.63 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 43 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.34 6.43 -51.93 -0.33 1.01 16 46 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 47 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 48 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -29.48 385.98 -10.81 -40.29 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.67 Total: 2.67 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 0.69 Total: -6.18 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -1.28 Total: -68.04 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.69 Total: -43.60 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.65 Total: 53.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.48 -10.81 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.020 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds