Wall clock time and date at job start Tue Mar 31 2020 17:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46834 * 2 1 4 4 C 1.47840 * 111.00203 * 55.44069 * 3 2 1 5 5 C 1.54910 * 104.79494 * 146.36237 * 4 3 2 6 6 C 1.55140 * 101.65222 * 322.92997 * 5 4 3 7 7 C 1.47445 * 110.99678 * 176.28497 * 3 2 1 8 8 H 1.09006 * 109.88618 * 117.16854 * 7 3 2 9 9 C 1.53003 * 109.88871 * 356.15062 * 7 3 2 10 10 N 1.46500 * 109.46856 * 177.89379 * 9 7 3 11 11 C 1.46503 * 119.99672 * 294.03927 * 10 9 7 12 12 S 1.65604 * 120.00248 * 114.04558 * 10 9 7 13 13 O 1.42101 * 106.39728 * 202.85796 * 12 10 9 14 14 O 1.42102 * 106.39979 * 335.77341 * 12 10 9 15 15 N 1.65593 * 107.21689 * 89.31643 * 12 10 9 16 16 C 1.46505 * 120.00131 * 269.99486 * 15 12 10 17 17 C 1.46497 * 120.00114 * 90.00511 * 15 12 10 18 18 H 1.09003 * 109.47365 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.47582 * 119.99370 * 17 15 12 20 20 C 1.50701 * 109.47017 * 239.99621 * 17 15 12 21 21 H 1.08000 * 119.99989 * 359.97438 * 20 17 15 22 22 C 1.37880 * 120.00240 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00054 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 120.00175 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47091 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46782 * 120.00061 * 24 22 20 27 27 H 1.48497 * 109.47471 * 240.00128 * 24 22 20 28 28 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46866 * 300.00059 * 1 2 3 30 30 H 1.09000 * 109.47345 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.46866 * 239.99941 * 2 1 3 32 32 H 1.09000 * 109.47345 * 119.99845 * 2 1 3 33 33 H 1.08995 * 110.37131 * 265.18963 * 4 3 2 34 34 H 1.08998 * 110.37120 * 27.53758 * 4 3 2 35 35 H 1.08998 * 110.98832 * 81.01785 * 5 4 3 36 36 H 1.08996 * 110.98956 * 204.80264 * 5 4 3 37 37 H 1.08992 * 110.70736 * 277.27137 * 6 5 4 38 38 H 1.09003 * 110.70362 * 154.03530 * 6 5 4 39 39 H 1.09002 * 109.46364 * 297.88459 * 9 7 3 40 40 H 1.08999 * 109.47563 * 57.88675 * 9 7 3 41 41 H 1.09000 * 109.46923 * 95.09617 * 11 10 9 42 42 H 1.09000 * 109.47119 * 215.09342 * 11 10 9 43 43 H 1.08998 * 109.47141 * 335.08918 * 11 10 9 44 44 H 1.08996 * 109.46607 * 90.00315 * 16 15 12 45 45 H 1.08999 * 109.47316 * 210.00839 * 16 15 12 46 46 H 1.09005 * 109.46950 * 330.00859 * 16 15 12 47 47 H 1.09006 * 109.47233 * 59.99959 * 19 17 15 48 48 H 1.09003 * 109.47389 * 179.97438 * 19 17 15 49 49 H 1.08994 * 109.47356 * 300.00358 * 19 17 15 50 50 H 0.96996 * 120.00018 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.4581 2.1456 1.1366 5 6 2.5790 3.1344 1.5434 6 6 3.8507 2.2723 1.3279 7 6 3.4908 1.4253 0.0892 8 1 3.9044 1.8835 -0.8093 9 6 4.0416 0.0070 0.2504 10 7 5.5054 0.0529 0.2876 11 6 6.2554 0.4716 -0.8992 12 16 6.3122 -0.3686 1.6710 13 8 7.5837 0.2621 1.6018 14 8 5.4020 -0.1673 2.7435 15 7 6.5942 -1.9987 1.5966 16 6 5.6115 -2.9378 2.1432 17 6 7.8263 -2.5018 0.9843 18 1 8.4287 -1.6622 0.6374 19 6 8.6181 -3.3055 2.0177 20 6 7.4808 -3.3884 -0.1843 21 1 6.4469 -3.5603 -0.4446 22 6 8.4847 -3.9802 -0.9212 23 7 9.7439 -3.7713 -0.6040 24 14 8.0565 -5.0798 -2.3692 25 1 6.5805 -5.1527 -2.5159 26 1 8.6496 -4.5183 -3.6095 27 1 8.5988 -6.4420 -2.1339 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5665 2.6898 0.8255 34 1 1.2252 1.4750 1.9638 35 1 2.5845 4.0079 0.8915 36 1 2.4791 3.4297 2.5878 37 1 4.0340 1.6333 2.1917 38 1 4.7150 2.9046 1.1246 39 1 3.6679 -0.4243 1.1791 40 1 3.7184 -0.6061 -0.5909 41 1 6.4812 1.5357 -0.8296 42 1 7.1853 -0.0939 -0.9596 43 1 5.6579 0.2844 -1.7914 44 1 4.8978 -3.2103 1.3658 45 1 6.1224 -3.8330 2.4976 46 1 5.0831 -2.4685 2.9732 47 1 8.0156 -4.1451 2.3644 48 1 9.5347 -3.6802 1.5620 49 1 8.8680 -2.6643 2.8629 50 1 10.4501 -4.1879 -1.1221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330424241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:11 Heat of formation + Delta-G solvation = -81.323556 kcal Electronic energy + Delta-G solvation = -29701.882990 eV Core-core repulsion = 25890.491326 eV Total energy + Delta-G solvation = -3811.391664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.74516 -38.41360 -37.91539 -36.99723 -36.87046 -34.52262 -34.22718 -31.33332 -30.94088 -29.48121 -27.70998 -27.33297 -26.99710 -25.21867 -24.12943 -22.58093 -21.88379 -20.49855 -19.72706 -18.85286 -18.54729 -18.33526 -17.35039 -17.01228 -16.83442 -16.47974 -15.97501 -15.52536 -15.34284 -15.15673 -14.80500 -14.68564 -14.41467 -14.23306 -13.99233 -13.67375 -13.63780 -13.47311 -13.36867 -13.23667 -13.16144 -12.94542 -12.79805 -12.77715 -12.64820 -12.54017 -12.30934 -12.25303 -12.17065 -12.15001 -12.05989 -11.98726 -11.88049 -11.75237 -11.55000 -11.16409 -10.51043 -10.09455 -9.68815 -9.17991 -8.09202 -6.24245 -0.37125 1.44312 1.47526 1.57201 1.92509 2.44458 2.49805 3.01343 3.19279 3.34388 3.61341 3.67821 3.75470 3.96810 4.09734 4.19343 4.25996 4.26612 4.41342 4.47479 4.57131 4.64737 4.66924 4.68409 4.75224 4.76295 4.82498 4.91853 4.93573 4.95132 4.98820 5.03222 5.03408 5.05918 5.09860 5.12336 5.15143 5.26211 5.32166 5.39291 5.47995 5.61285 5.74560 5.84946 6.03284 6.09242 6.13173 6.28328 6.85076 7.45826 8.95571 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.004188 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.688864 B = 6684.244796 C = 7439.715887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 N -0.522 5.522 4 C 0.041 3.959 5 C -0.123 4.123 6 C -0.157 4.157 7 C 0.065 3.935 8 H 0.094 0.906 9 C 0.108 3.892 10 N -0.999 5.999 11 C 0.097 3.903 12 S 2.789 3.211 13 O -1.015 7.015 14 O -0.999 6.999 15 N -0.999 5.999 16 C 0.095 3.905 17 C 0.272 3.728 18 H 0.024 0.976 19 C -0.141 4.141 20 C -0.525 4.525 21 H 0.066 0.934 22 C 0.018 3.982 23 N -0.918 5.918 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.017 0.983 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 8.351 0.624 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 N -0.247 5.247 4 C -0.087 4.087 5 C -0.161 4.161 6 C -0.196 4.196 7 C -0.045 4.045 8 H 0.112 0.888 9 C -0.019 4.019 10 N -0.840 5.840 11 C -0.048 4.048 12 S 2.799 3.201 13 O -0.999 6.999 14 O -0.983 6.983 15 N -0.840 5.840 16 C -0.051 4.051 17 C 0.168 3.832 18 H 0.042 0.958 19 C -0.201 4.201 20 C -0.565 4.565 21 H 0.085 0.915 22 C -0.182 4.182 23 N -0.557 5.557 24 Si 0.784 3.216 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.036 0.964 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.953 9.105 0.798 19.260 hybrid contribution 0.756 -1.361 -0.197 1.570 sum -16.197 7.743 0.601 17.963 Atomic orbital electron populations 1.21796 0.93544 1.02452 1.02468 1.22474 0.97122 0.89245 1.01116 1.63949 1.04586 1.13393 1.42815 1.23132 0.98347 0.95557 0.91623 1.22691 0.93072 0.98089 1.02280 1.23027 0.99419 0.99065 0.98089 1.22731 0.88268 0.94615 0.98889 0.88757 1.22115 0.77945 0.98328 1.03464 1.57620 1.14800 1.81818 1.29771 1.21483 0.95807 0.99866 0.87671 1.01477 0.72077 0.73072 0.73447 1.93527 1.43282 1.75688 1.87372 1.93489 1.65714 1.85905 1.53180 1.57671 1.29292 1.23909 1.73122 1.21429 0.91195 0.94415 0.98014 1.18415 0.79986 0.93834 0.90951 0.95828 1.21969 1.01943 0.99162 0.97001 1.21597 0.93351 1.28959 1.12578 0.91535 1.25669 0.94782 0.97771 0.99965 1.70020 0.99794 1.44977 1.40921 0.85508 0.78584 0.78359 0.79127 1.18830 1.20980 1.21007 0.91295 0.92413 0.91843 0.90020 0.94741 0.88727 0.93582 0.89815 0.90068 0.91904 0.91334 0.90121 0.89169 0.91790 0.93146 0.88540 0.92519 0.90710 0.90622 0.93552 0.91019 0.96359 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.72 71.98 0.70 -1.46 16 2 C 0.03 0.53 4.46 86.30 0.38 0.91 16 3 N -0.52 -10.74 5.27 -860.53 -4.53 -15.27 16 4 C 0.04 0.74 5.34 86.78 0.46 1.21 16 5 C -0.12 -2.34 7.08 31.98 0.23 -2.11 16 6 C -0.16 -3.91 6.21 31.77 0.20 -3.71 16 7 C 0.06 1.52 3.48 45.26 0.16 1.68 16 8 H 0.09 2.15 7.76 -2.38 -0.02 2.14 16 9 C 0.11 2.81 3.72 86.38 0.32 3.13 16 10 N -1.00 -31.81 3.07 -539.12 -1.65 -33.46 16 11 C 0.10 2.89 9.66 127.77 1.23 4.12 16 12 S 2.79 110.12 6.05 -56.49 -0.34 109.78 16 13 O -1.01 -47.66 15.85 -128.00 -2.03 -49.69 16 14 O -1.00 -38.99 13.78 -128.00 -1.76 -40.76 16 15 N -1.00 -41.21 3.12 -520.44 -1.62 -42.84 16 16 C 0.09 3.25 9.90 127.77 1.27 4.52 16 17 C 0.27 13.38 2.62 44.25 0.12 13.50 16 18 H 0.02 1.33 6.91 -2.39 -0.02 1.31 16 19 C -0.14 -6.79 8.95 71.98 0.64 -6.15 16 20 C -0.53 -26.46 8.37 25.60 0.21 -26.24 16 21 H 0.07 3.23 7.65 -2.91 -0.02 3.21 16 22 C 0.02 0.92 5.30 84.65 0.45 1.37 16 23 N -0.92 -50.47 11.32 21.45 0.24 -50.23 16 24 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.82 6.82 -2.39 -0.02 0.80 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.50 6.90 -2.39 -0.02 1.48 16 32 H 0.03 0.70 6.33 -2.39 -0.02 0.69 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 0.86 7.40 -2.39 -0.02 0.84 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.86 6.13 -2.39 -0.01 1.85 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.20 5.65 -2.39 -0.01 2.19 16 40 H 0.09 2.10 6.55 -2.39 -0.02 2.09 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.81 7.96 -2.39 -0.02 1.79 16 43 H 0.10 2.31 8.03 -2.39 -0.02 2.29 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.56 6.43 -2.39 -0.02 2.54 16 46 H 0.08 2.33 7.02 -2.38 -0.02 2.31 16 47 H 0.05 2.05 6.66 -2.38 -0.02 2.03 16 48 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 50 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -62.93 385.98 -2.40 -65.33 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.91 Total: 23.47 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 6.37 Total: -9.24 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -7.57 Total: -141.80 kcal Atomic # 8 Polarization: -86.65 SS G_CDS: -3.79 Total: -90.45 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 110.12 SS G_CDS: -0.34 Total: 109.78 kcal Total: -62.93 -2.40 -65.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330424241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.994 kcal (2) G-P(sol) polarization free energy of solvation -62.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds