Wall clock time and date at job start Tue Mar 31 2020 17:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47418 * 2 1 4 4 C 1.50697 * 109.47160 * 239.99723 * 2 1 3 5 5 H 1.07995 * 120.00422 * 240.00172 * 4 2 1 6 6 C 1.37879 * 119.99765 * 60.00496 * 4 2 1 7 7 N 1.31511 * 120.00007 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47468 * 89.99377 * 8 6 4 10 10 H 1.48496 * 109.47179 * 210.00031 * 8 6 4 11 11 H 1.48500 * 109.47033 * 329.99773 * 8 6 4 12 12 N 1.46503 * 109.46873 * 120.00050 * 2 1 3 13 13 C 1.46504 * 120.00183 * 59.99888 * 12 2 1 14 14 S 1.65599 * 120.00061 * 239.99919 * 12 2 1 15 15 O 1.42106 * 106.40341 * 336.45944 * 14 12 2 16 16 O 1.42102 * 106.40522 * 203.54386 * 14 12 2 17 17 N 1.65599 * 107.21780 * 89.99955 * 14 12 2 18 18 C 1.46499 * 119.99915 * 65.00415 * 17 14 12 19 19 C 1.52999 * 109.47043 * 163.44475 * 18 17 14 20 20 N 1.46905 * 110.01795 * 54.55761 * 19 18 17 21 21 C 1.46899 * 110.99689 * 56.17664 * 20 19 18 22 22 C 1.46892 * 110.99811 * 180.12668 * 20 19 18 23 23 C 1.54258 * 110.07355 * 293.13819 * 19 18 17 24 24 C 1.54892 * 104.19837 * 264.30458 * 23 19 18 25 25 C 1.54891 * 102.74584 * 322.05721 * 24 23 19 26 26 C 1.53873 * 110.03301 * 175.94700 * 19 18 17 27 27 H 1.09004 * 109.47489 * 300.00147 * 1 2 3 28 28 H 1.09000 * 109.47146 * 59.99955 * 1 2 3 29 29 H 1.08998 * 109.47418 * 180.02562 * 1 2 3 30 30 H 0.97005 * 120.00014 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47229 * 270.00035 * 13 12 2 32 32 H 1.09004 * 109.46776 * 29.99985 * 13 12 2 33 33 H 1.08994 * 109.47100 * 149.99871 * 13 12 2 34 34 H 0.96998 * 120.00087 * 244.99919 * 17 14 12 35 35 H 1.09002 * 109.47285 * 43.44343 * 18 17 14 36 36 H 1.09002 * 109.46734 * 283.44420 * 18 17 14 37 37 H 1.08993 * 109.47493 * 54.44420 * 21 20 19 38 38 H 1.09009 * 109.46776 * 174.45052 * 21 20 19 39 39 H 1.09004 * 109.47218 * 294.44170 * 21 20 19 40 40 H 1.08998 * 109.47066 * 66.29720 * 22 20 19 41 41 H 1.09011 * 109.47028 * 186.29037 * 22 20 19 42 42 H 1.08996 * 109.47878 * 306.29092 * 22 20 19 43 43 H 1.09007 * 110.48610 * 145.62522 * 23 19 18 44 44 H 1.09000 * 110.48867 * 22.98673 * 23 19 18 45 45 H 1.09002 * 110.75637 * 203.74544 * 24 23 19 46 46 H 1.08999 * 110.75405 * 80.37288 * 24 23 19 47 47 H 1.09000 * 110.48425 * 156.62405 * 25 24 23 48 48 H 1.09001 * 110.48673 * 279.12933 * 25 24 23 49 49 H 1.09006 * 110.03010 * 0.04836 * 26 19 18 50 50 H 1.09001 * 110.03429 * 238.62084 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1829 1.5749 16 8 3.7118 -0.8790 2.9815 17 7 1.9606 0.8090 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6405 0.7986 5.4586 20 7 -0.0724 1.9838 4.9634 21 6 -1.1671 1.6010 4.0617 22 6 -0.5697 2.8024 6.0771 23 6 1.8206 1.2279 6.3545 24 6 1.8536 0.1606 7.4766 25 6 0.3505 -0.1054 7.7395 26 6 -0.2942 -0.0491 6.3391 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7083 1.1609 -3.4844 31 1 0.7375 -2.1444 1.9993 32 1 1.5294 -2.5969 0.4708 33 1 2.4627 -2.5819 1.9864 34 1 1.9054 1.7750 3.4682 35 1 1.7596 -0.8582 4.6564 36 1 0.3033 -0.4346 3.7247 37 1 -1.8203 0.8883 4.5652 38 1 -1.7391 2.4876 3.7878 39 1 -0.7542 1.1431 3.1628 40 1 0.2742 3.2222 6.6246 41 1 -1.1874 3.6111 5.6861 42 1 -1.1649 2.1819 6.7469 43 1 1.6405 2.2175 6.7745 44 1 2.7526 1.2162 5.7894 45 1 2.3382 0.5542 8.3700 46 1 2.3520 -0.7458 7.1329 47 1 0.2096 -1.0901 8.1851 48 1 -0.0665 0.6676 8.3850 49 1 -0.3836 -1.0548 5.9285 50 1 -1.2769 0.4189 6.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330425565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:32 Heat of formation + Delta-G solvation = -67.938655 kcal Electronic energy + Delta-G solvation = -29676.762336 eV Core-core repulsion = 25865.951085 eV Total energy + Delta-G solvation = -3810.811251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22908 -36.56935 -36.09949 -35.13224 -35.08067 -34.35271 -32.53706 -29.18230 -29.06169 -28.79740 -27.55542 -25.46303 -25.13692 -24.35478 -23.47991 -20.88058 -20.70977 -18.88158 -18.48327 -17.18987 -17.06766 -16.67322 -16.32754 -15.70514 -15.34020 -15.02055 -14.85094 -14.53490 -14.19950 -13.81452 -13.42685 -13.38296 -13.22566 -12.91926 -12.59491 -12.36069 -12.08996 -11.96503 -11.94772 -11.78992 -11.74790 -11.40794 -11.39093 -11.32456 -11.26137 -11.19105 -11.17479 -10.98874 -10.87340 -10.78941 -10.70439 -10.49348 -10.41062 -10.19275 -10.01911 -9.24303 -9.11476 -8.42518 -8.36084 -7.92140 -6.04352 -4.10636 1.32977 3.29926 3.37139 3.41352 3.55678 3.83360 4.21831 4.33116 4.42515 4.45724 4.62389 4.96346 5.05130 5.09857 5.15146 5.21467 5.27398 5.30247 5.33902 5.41225 5.48742 5.50625 5.54244 5.65180 5.69069 5.73816 5.77476 5.79148 5.88820 5.92391 6.00825 6.09080 6.14027 6.17717 6.26445 6.40374 6.70009 6.83206 6.87666 6.96572 7.00232 7.08516 7.36892 7.59350 7.67720 7.83773 8.08983 8.31524 8.91326 9.54810 11.01228 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.003724 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.889615 B = 7517.240911 C = 8051.667202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.779 3.221 15 O -0.976 6.976 16 O -1.001 7.001 17 N -1.123 6.123 18 C 0.140 3.860 19 C 0.104 3.896 20 N -0.530 5.530 21 C 0.016 3.984 22 C 0.019 3.981 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.152 4.152 27 H 0.010 0.990 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.420 0.580 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -0.099 19.770 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.788 3.212 15 O -0.960 6.960 16 O -0.984 6.984 17 N -0.883 5.883 18 C 0.012 3.988 19 C 0.013 3.987 20 N -0.253 5.253 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.155 4.155 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.192 4.192 27 H 0.029 0.971 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.465 0.170 19.319 19.829 hybrid contribution -0.953 -0.559 -0.463 1.198 sum -5.417 -0.390 18.856 19.623 Atomic orbital electron populations 1.22093 0.98288 0.99529 1.00469 1.18696 0.91224 0.93018 0.80427 0.92362 1.21346 1.31525 1.12967 0.90137 0.91980 1.24899 0.95004 0.94997 0.98957 1.69862 1.36573 1.22680 1.23699 0.86513 0.79276 0.79284 0.82426 1.20717 1.21148 1.19847 1.57659 1.69900 1.19741 1.35913 1.21295 0.98514 0.82635 1.02571 1.01894 0.73710 0.73106 0.72508 1.93612 1.74488 1.55928 1.71945 1.93513 1.69416 1.60947 1.74533 1.56011 1.61915 1.18023 1.52376 1.21245 0.94827 0.92546 0.90175 1.21935 0.93885 0.89434 0.93454 1.62084 1.26645 1.18940 1.17662 1.22523 0.92836 1.00563 0.97300 1.22481 0.99819 0.97127 0.93479 1.22540 0.97938 0.99094 0.95914 1.22534 0.96144 0.99378 0.98423 1.22303 0.95799 1.01383 0.96294 1.22816 0.99352 1.00965 0.96084 0.97099 0.89062 0.95031 0.92756 0.94734 0.89931 0.92005 0.74530 0.90370 0.92028 0.95470 0.91473 0.90115 0.91164 0.91586 0.95195 0.90578 0.90476 0.91471 0.91053 0.91721 0.91907 0.91063 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.97 37.16 0.33 -2.90 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -14.01 7.99 -34.44 -0.28 -14.28 16 5 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.99 -20.39 3.12 -115.86 -0.36 -20.75 16 13 C 0.10 1.70 9.65 59.85 0.58 2.28 16 14 S 2.78 54.80 6.14 -107.50 -0.66 54.14 16 15 O -0.98 -23.19 16.70 -57.17 -0.95 -24.15 16 16 O -1.00 -20.71 16.19 -57.17 -0.93 -21.63 16 17 N -1.12 -17.00 5.42 -10.61 -0.06 -17.06 16 18 C 0.14 1.76 4.19 -4.04 -0.02 1.75 16 19 C 0.10 1.09 0.30 -130.49 -0.04 1.05 16 20 N -0.53 -5.63 4.13 -234.11 -0.97 -6.60 16 21 C 0.02 0.17 8.78 60.06 0.53 0.70 16 22 C 0.02 0.16 8.95 60.06 0.54 0.70 16 23 C -0.12 -1.18 5.77 -25.07 -0.14 -1.32 16 24 C -0.13 -1.10 6.91 -24.74 -0.17 -1.27 16 25 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 26 C -0.15 -1.35 4.81 -25.61 -0.12 -1.47 16 27 H 0.01 0.20 8.11 -51.93 -0.42 -0.22 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 33 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 34 H 0.42 6.15 8.09 -34.47 -0.28 5.87 16 35 H 0.08 0.99 7.72 -51.93 -0.40 0.59 16 36 H 0.06 0.76 6.85 -51.93 -0.36 0.41 16 37 H 0.03 0.27 6.53 -51.93 -0.34 -0.07 16 38 H 0.07 0.69 7.94 -51.92 -0.41 0.27 16 39 H 0.08 1.02 6.71 -51.93 -0.35 0.68 16 40 H 0.07 0.58 6.14 -51.93 -0.32 0.26 16 41 H 0.07 0.54 7.93 -51.92 -0.41 0.13 16 42 H 0.03 0.24 6.08 -51.93 -0.32 -0.08 16 43 H 0.08 0.71 5.69 -51.93 -0.30 0.41 16 44 H 0.08 0.89 7.45 -51.93 -0.39 0.51 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 50 H 0.07 0.61 5.20 -51.93 -0.27 0.34 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -31.41 384.12 -10.16 -41.58 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.39 Total: 4.54 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.76 Total: -7.86 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.76 Total: -68.57 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.88 Total: -45.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.66 Total: 54.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.41 -10.16 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.363 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds