Wall clock time and date at job start Tue Mar 31 2020 17:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47418 * 2 1 4 4 C 1.50697 * 109.47160 * 239.99723 * 2 1 3 5 5 H 1.07995 * 120.00422 * 240.00172 * 4 2 1 6 6 C 1.37879 * 119.99765 * 60.00496 * 4 2 1 7 7 N 1.31511 * 120.00007 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00134 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47468 * 89.99377 * 8 6 4 10 10 H 1.48496 * 109.47179 * 210.00031 * 8 6 4 11 11 H 1.48500 * 109.47033 * 329.99773 * 8 6 4 12 12 N 1.46503 * 109.46873 * 120.00050 * 2 1 3 13 13 C 1.46504 * 120.00183 * 59.99888 * 12 2 1 14 14 S 1.65599 * 120.00061 * 239.99919 * 12 2 1 15 15 O 1.42106 * 106.40341 * 336.45944 * 14 12 2 16 16 O 1.42102 * 106.40522 * 203.54386 * 14 12 2 17 17 N 1.65599 * 107.21780 * 89.99955 * 14 12 2 18 18 C 1.46499 * 119.99915 * 65.00415 * 17 14 12 19 19 C 1.52999 * 109.47043 * 163.44475 * 18 17 14 20 20 N 1.46905 * 110.01795 * 54.55761 * 19 18 17 21 21 C 1.46899 * 110.99689 * 56.17664 * 20 19 18 22 22 C 1.46892 * 110.99811 * 180.12668 * 20 19 18 23 23 C 1.54258 * 110.07355 * 293.13819 * 19 18 17 24 24 C 1.54892 * 104.19837 * 264.30458 * 23 19 18 25 25 C 1.54891 * 102.74584 * 322.05721 * 24 23 19 26 26 C 1.53873 * 110.03301 * 175.94700 * 19 18 17 27 27 H 1.09004 * 109.47489 * 300.00147 * 1 2 3 28 28 H 1.09000 * 109.47146 * 59.99955 * 1 2 3 29 29 H 1.08998 * 109.47418 * 180.02562 * 1 2 3 30 30 H 0.97005 * 120.00014 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47229 * 270.00035 * 13 12 2 32 32 H 1.09004 * 109.46776 * 29.99985 * 13 12 2 33 33 H 1.08994 * 109.47100 * 149.99871 * 13 12 2 34 34 H 0.96998 * 120.00087 * 244.99919 * 17 14 12 35 35 H 1.09002 * 109.47285 * 43.44343 * 18 17 14 36 36 H 1.09002 * 109.46734 * 283.44420 * 18 17 14 37 37 H 1.08993 * 109.47493 * 54.44420 * 21 20 19 38 38 H 1.09009 * 109.46776 * 174.45052 * 21 20 19 39 39 H 1.09004 * 109.47218 * 294.44170 * 21 20 19 40 40 H 1.08998 * 109.47066 * 66.29720 * 22 20 19 41 41 H 1.09011 * 109.47028 * 186.29037 * 22 20 19 42 42 H 1.08996 * 109.47878 * 306.29092 * 22 20 19 43 43 H 1.09007 * 110.48610 * 145.62522 * 23 19 18 44 44 H 1.09000 * 110.48867 * 22.98673 * 23 19 18 45 45 H 1.09002 * 110.75637 * 203.74544 * 24 23 19 46 46 H 1.08999 * 110.75405 * 80.37288 * 24 23 19 47 47 H 1.09000 * 110.48425 * 156.62405 * 25 24 23 48 48 H 1.09001 * 110.48673 * 279.12933 * 25 24 23 49 49 H 1.09006 * 110.03010 * 0.04836 * 26 19 18 50 50 H 1.09001 * 110.03429 * 238.62084 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1829 1.5749 16 8 3.7118 -0.8790 2.9815 17 7 1.9606 0.8090 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6405 0.7986 5.4586 20 7 -0.0724 1.9838 4.9634 21 6 -1.1671 1.6010 4.0617 22 6 -0.5697 2.8024 6.0771 23 6 1.8206 1.2279 6.3545 24 6 1.8536 0.1606 7.4766 25 6 0.3505 -0.1054 7.7395 26 6 -0.2942 -0.0491 6.3391 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7083 1.1609 -3.4844 31 1 0.7375 -2.1444 1.9993 32 1 1.5294 -2.5969 0.4708 33 1 2.4627 -2.5819 1.9864 34 1 1.9054 1.7750 3.4682 35 1 1.7596 -0.8582 4.6564 36 1 0.3033 -0.4346 3.7247 37 1 -1.8203 0.8883 4.5652 38 1 -1.7391 2.4876 3.7878 39 1 -0.7542 1.1431 3.1628 40 1 0.2742 3.2222 6.6246 41 1 -1.1874 3.6111 5.6861 42 1 -1.1649 2.1819 6.7469 43 1 1.6405 2.2175 6.7745 44 1 2.7526 1.2162 5.7894 45 1 2.3382 0.5542 8.3700 46 1 2.3520 -0.7458 7.1329 47 1 0.2096 -1.0901 8.1851 48 1 -0.0665 0.6676 8.3850 49 1 -0.3836 -1.0548 5.9285 50 1 -1.2769 0.4189 6.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330425565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:31 Heat of formation + Delta-G solvation = -90.678913 kcal Electronic energy + Delta-G solvation = -29677.748427 eV Core-core repulsion = 25865.951085 eV Total energy + Delta-G solvation = -3811.797342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03084 -38.27798 -37.85405 -36.84643 -35.82372 -35.50959 -34.49732 -30.89437 -29.92898 -29.67144 -28.31472 -27.21535 -26.96710 -25.30868 -24.24140 -22.58698 -21.53288 -20.17402 -19.61112 -18.72230 -18.57351 -18.14824 -17.59799 -17.21993 -16.71661 -16.21794 -15.80093 -15.68748 -15.33268 -15.07248 -14.86345 -14.64023 -14.39766 -14.13860 -13.84402 -13.76200 -13.43858 -13.32721 -13.13878 -13.09295 -13.07040 -12.99144 -12.71885 -12.67572 -12.59610 -12.53582 -12.32653 -12.22145 -12.10128 -12.04073 -11.90525 -11.88737 -11.75752 -11.46942 -11.27779 -11.13846 -10.49007 -10.34958 -9.62450 -9.12606 -8.10000 -6.23328 -0.25455 1.42424 1.44851 1.54167 2.09786 2.44544 2.67627 3.02609 3.18239 3.44152 3.62383 3.66170 3.90018 4.15410 4.24038 4.30919 4.36745 4.44506 4.50858 4.55131 4.60724 4.69934 4.74992 4.77506 4.77732 4.83907 4.87070 4.92796 4.96992 5.01410 5.07966 5.08292 5.12989 5.19124 5.21300 5.23126 5.27340 5.29573 5.44449 5.51323 5.63166 5.73086 5.90433 6.11598 6.19324 6.20842 6.31527 6.33275 6.84289 7.45300 8.94020 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.003724 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.889615 B = 7517.240911 C = 8051.667202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.092 3.908 14 S 2.795 3.205 15 O -1.021 7.021 16 O -1.011 7.011 17 N -1.107 6.107 18 C 0.132 3.868 19 C 0.107 3.893 20 N -0.545 5.545 21 C 0.018 3.982 22 C 0.020 3.980 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.149 4.149 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.423 0.577 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 -0.941 21.483 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.171 3.829 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.804 3.196 15 O -1.006 7.006 16 O -0.994 6.994 17 N -0.870 5.870 18 C 0.006 3.994 19 C 0.015 3.985 20 N -0.269 5.269 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.158 4.158 24 C -0.164 4.164 25 C -0.152 4.152 26 C -0.188 4.188 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.260 0.740 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.665 -0.693 21.045 21.805 hybrid contribution -0.570 -0.279 -0.909 1.108 sum -6.234 -0.972 20.136 21.102 Atomic orbital electron populations 1.21861 0.96676 1.00014 1.00323 1.18356 0.92289 0.91183 0.81071 0.96045 1.21668 1.31623 1.13026 0.91556 0.92542 1.25623 0.95249 0.95699 1.01605 1.69981 1.37293 1.23642 1.24269 0.85613 0.78774 0.78439 0.79132 1.19421 1.20999 1.20025 1.57521 1.69900 1.21024 1.35309 1.21479 1.00445 0.80819 1.02626 1.01188 0.73711 0.72263 0.72418 1.93545 1.76092 1.57474 1.73447 1.93492 1.70062 1.61328 1.74537 1.55578 1.61676 1.18316 1.51476 1.21520 0.94587 0.92691 0.90651 1.21903 0.94420 0.89512 0.92637 1.62057 1.26936 1.19222 1.18642 1.22457 0.92954 1.00899 0.96687 1.22502 1.00160 0.97049 0.93006 1.22558 0.96816 1.00173 0.96208 1.22531 0.97040 0.98529 0.98259 1.22282 0.94768 1.02334 0.95766 1.22783 0.99147 1.00638 0.96271 0.94632 0.91746 0.94071 0.92695 0.91451 0.91040 0.91097 0.74021 0.90263 0.91377 0.94256 0.91149 0.92244 0.90776 0.91219 0.94128 0.89743 0.92471 0.90314 0.91859 0.90760 0.90882 0.90914 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.97 71.98 0.65 -5.11 16 2 C 0.28 13.63 2.62 44.24 0.12 13.75 16 3 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 4 C -0.54 -29.42 7.99 25.60 0.20 -29.22 16 5 H 0.06 3.06 7.33 -2.91 -0.02 3.04 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -51.58 11.32 21.45 0.24 -51.33 16 8 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 N -1.00 -40.99 3.12 -520.45 -1.62 -42.61 16 13 C 0.09 3.13 9.65 127.77 1.23 4.36 16 14 S 2.80 111.20 6.14 -56.49 -0.35 110.85 16 15 O -1.02 -50.14 16.70 -128.00 -2.14 -52.28 16 16 O -1.01 -41.59 16.19 -128.00 -2.07 -43.66 16 17 N -1.11 -33.17 5.42 -187.49 -1.02 -34.19 16 18 C 0.13 3.15 4.19 86.38 0.36 3.52 16 19 C 0.11 2.03 0.30 4.25 0.00 2.03 16 20 N -0.55 -10.63 4.13 -894.58 -3.70 -14.32 16 21 C 0.02 0.36 8.78 127.69 1.12 1.48 16 22 C 0.02 0.30 8.95 127.69 1.14 1.45 16 23 C -0.12 -2.22 5.77 31.67 0.18 -2.04 16 24 C -0.13 -1.90 6.91 31.89 0.22 -1.68 16 25 C -0.11 -1.43 6.83 31.67 0.22 -1.22 16 26 C -0.15 -2.22 4.81 31.32 0.15 -2.07 16 27 H 0.03 1.36 8.11 -2.38 -0.02 1.34 16 28 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 29 H 0.04 1.71 7.67 -2.39 -0.02 1.69 16 30 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.59 7.02 -2.39 -0.02 2.58 16 33 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 34 H 0.42 12.40 8.09 -96.75 -0.78 11.62 16 35 H 0.08 1.89 7.72 -2.39 -0.02 1.87 16 36 H 0.07 1.55 6.85 -2.39 -0.02 1.54 16 37 H 0.04 0.67 6.53 -2.39 -0.02 0.66 16 38 H 0.07 1.33 7.94 -2.38 -0.02 1.32 16 39 H 0.06 1.43 6.71 -2.39 -0.02 1.42 16 40 H 0.07 1.05 6.14 -2.39 -0.01 1.04 16 41 H 0.07 0.99 7.93 -2.38 -0.02 0.98 16 42 H 0.04 0.53 6.08 -2.39 -0.01 0.51 16 43 H 0.08 1.41 5.69 -2.38 -0.01 1.40 16 44 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 1.08 7.67 -2.38 -0.02 1.06 16 50 H 0.08 1.07 5.20 -2.39 -0.01 1.06 16 Total: -1.00 -67.83 384.12 -2.43 -70.25 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.15 Total: 24.99 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 6.05 Total: -13.31 kcal Atomic # 7 Polarization: -136.36 SS G_CDS: -6.10 Total: -142.46 kcal Atomic # 8 Polarization: -91.73 SS G_CDS: -4.21 Total: -95.94 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 111.20 SS G_CDS: -0.35 Total: 110.85 kcal Total: -67.83 -2.43 -70.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330425565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.425 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds