Wall clock time and date at job start Tue Mar 31 2020 17:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46903 * 109.47578 * 185.00096 * 4 2 1 6 6 C 1.46847 * 110.99740 * 294.21029 * 5 4 2 7 7 C 1.53038 * 109.52463 * 174.16083 * 6 5 4 8 8 C 1.53115 * 109.27754 * 59.17501 * 7 6 5 9 9 C 1.53119 * 109.16541 * 302.34721 * 8 7 6 10 10 C 1.46842 * 111.00137 * 169.99980 * 5 4 2 11 11 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 12 12 S 1.65595 * 120.00465 * 265.00239 * 11 2 1 13 13 O 1.42105 * 106.40515 * 178.53580 * 12 11 2 14 14 O 1.42104 * 106.40235 * 311.45773 * 12 11 2 15 15 N 1.65597 * 107.21714 * 64.99837 * 12 11 2 16 16 C 1.46497 * 120.00329 * 269.99960 * 15 12 11 17 17 C 1.46504 * 119.99963 * 90.00434 * 15 12 11 18 18 H 1.08992 * 109.47290 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.46720 * 239.99790 * 17 15 12 20 20 C 1.50703 * 109.47360 * 120.00059 * 17 15 12 21 21 H 1.08006 * 119.99635 * 359.97438 * 20 17 15 22 22 C 1.37874 * 120.00314 * 179.97438 * 20 17 15 23 23 N 1.31524 * 119.99873 * 359.97438 * 22 20 17 24 24 Si 1.86792 * 120.00421 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47321 * 89.99938 * 24 22 20 26 26 H 1.48496 * 109.47495 * 210.00125 * 24 22 20 27 27 H 1.48505 * 109.46953 * 330.00030 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 1.09001 * 109.46697 * 294.17565 * 6 5 4 34 34 H 1.08997 * 109.46416 * 54.14155 * 6 5 4 35 35 H 1.09009 * 109.50093 * 299.23866 * 7 6 5 36 36 H 1.08998 * 109.54055 * 179.14296 * 7 6 5 37 37 H 1.09008 * 109.52304 * 182.44537 * 8 7 6 38 38 H 1.09000 * 109.57632 * 62.28884 * 8 7 6 39 39 H 1.09000 * 109.50494 * 297.71685 * 9 8 7 40 40 H 1.08998 * 109.50324 * 177.58948 * 9 8 7 41 41 H 1.08993 * 109.46686 * 305.85978 * 10 5 4 42 42 H 1.09009 * 109.46384 * 65.82379 * 10 5 4 43 43 H 0.97006 * 120.00024 * 85.00109 * 11 2 1 44 44 H 1.09006 * 109.47109 * 89.99934 * 16 15 12 45 45 H 1.09003 * 109.47919 * 210.00260 * 16 15 12 46 46 H 1.09007 * 109.47206 * 330.00359 * 16 15 12 47 47 H 1.08998 * 109.47428 * 59.99931 * 19 17 15 48 48 H 1.09004 * 109.47262 * 180.02562 * 19 17 15 49 49 H 1.09002 * 109.47736 * 299.99920 * 19 17 15 50 50 H 0.96992 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.1306 0.4993 -1.2658 7 6 5.6405 0.3642 -1.0559 8 6 6.2202 -0.5569 -2.1330 9 6 5.5170 -1.9153 -2.0643 10 6 4.0106 -1.7141 -2.2449 11 7 2.0183 -0.6905 1.1962 12 16 2.4121 0.1772 2.5505 13 8 2.8123 -0.7697 3.5316 14 8 3.2436 1.2444 2.1156 15 7 1.0168 0.8704 3.1114 16 6 0.6184 2.1993 2.6409 17 6 0.1806 0.1547 4.0784 18 1 0.6343 -0.8095 4.3075 19 6 -1.2118 -0.0657 3.4838 20 6 0.0644 0.9685 5.3415 21 1 0.5639 1.9232 5.4166 22 6 -0.6794 0.4944 6.4011 23 7 -1.2880 -0.6680 6.3094 24 14 -0.8229 1.5027 7.9669 25 1 -1.9977 2.4056 7.8684 26 1 -0.9940 0.5927 9.1278 27 1 0.4091 2.3115 8.1494 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9378 0.9369 -2.2453 34 1 3.7125 1.1431 -0.4920 35 1 5.8345 -0.0605 -0.0709 36 1 6.1077 1.3464 -1.1270 37 1 7.2883 -0.6906 -1.9616 38 1 6.0617 -0.1139 -3.1162 39 1 5.7089 -2.3759 -1.0952 40 1 5.8953 -2.5614 -2.8564 41 1 3.5054 -2.6778 -2.1824 42 1 3.8184 -1.2661 -3.2199 43 1 2.1110 -1.6561 1.1950 44 1 -0.0046 2.0985 1.7522 45 1 0.0555 2.7083 3.4234 46 1 1.5080 2.7802 2.3970 47 1 -1.1278 -0.6543 2.5703 48 1 -1.8341 -0.5978 4.2034 49 1 -1.6657 0.8984 3.2544 50 1 -1.8115 -1.0014 7.0548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330431707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:05 Heat of formation + Delta-G solvation = -82.887523 kcal Electronic energy + Delta-G solvation = -29426.254044 eV Core-core repulsion = 25614.794562 eV Total energy + Delta-G solvation = -3811.459482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.29121 -36.69884 -36.36050 -35.95071 -35.07928 -32.94218 -32.52892 -30.90283 -29.78115 -29.04591 -26.46230 -25.41893 -25.13052 -23.46094 -22.96520 -20.87343 -20.73126 -19.79440 -18.74597 -17.29672 -16.78313 -16.42015 -16.13135 -15.65269 -15.14173 -14.89073 -14.55303 -14.45590 -14.26585 -13.72918 -13.56922 -13.41265 -13.34435 -13.01749 -12.71486 -12.53545 -12.35095 -12.06203 -11.88923 -11.78195 -11.70619 -11.39626 -11.29549 -11.26756 -11.16957 -11.13290 -10.95083 -10.85542 -10.78314 -10.74816 -10.48528 -10.40941 -10.24445 -10.16615 -10.01275 -9.26298 -9.09376 -8.42306 -8.35511 -7.90872 -6.04246 -4.10500 1.36939 3.29958 3.37199 3.41470 3.60143 3.79599 4.28042 4.43337 4.61355 4.70409 4.80277 4.86034 5.07035 5.10561 5.13912 5.26320 5.27399 5.34327 5.38238 5.45958 5.48140 5.56827 5.61032 5.65955 5.77222 5.78874 5.83922 5.88461 5.90798 6.04856 6.05016 6.14943 6.29901 6.31725 6.38556 6.50309 6.72036 6.84110 6.88429 7.02062 7.05189 7.08906 7.36002 7.59671 7.68062 7.84238 8.09679 8.31954 8.91597 9.54996 11.01341 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.003399 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.030369 B = 8236.526537 C = 8594.556677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.157 3.843 3 H 0.084 0.916 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.049 3.951 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.118 4.118 10 C 0.057 3.943 11 N -1.112 6.112 12 S 2.782 3.218 13 O -0.979 6.979 14 O -0.998 6.998 15 N -0.991 5.991 16 C 0.093 3.907 17 C 0.270 3.730 18 H 0.058 0.942 19 C -0.147 4.147 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.028 0.972 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.413 0.587 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.013 0.987 48 H 0.090 0.910 49 H 0.031 0.969 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -0.185 -19.387 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.076 4.076 5 N -0.256 5.256 6 C -0.078 4.078 7 C -0.155 4.155 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.071 4.071 11 N -0.870 5.870 12 S 2.791 3.209 13 O -0.963 6.963 14 O -0.982 6.982 15 N -0.833 5.833 16 C -0.053 4.053 17 C 0.167 3.833 18 H 0.075 0.925 19 C -0.206 4.206 20 C -0.559 4.559 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.246 0.754 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.109 0.891 49 H 0.050 0.950 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.222 -0.227 -18.452 19.816 hybrid contribution -0.818 0.387 -0.102 0.911 sum 6.403 0.160 -18.554 19.628 Atomic orbital electron populations 1.22492 0.95070 1.03159 1.03149 1.20654 0.93485 0.96173 0.84870 0.89797 1.22382 0.87772 1.01139 0.96304 1.61814 1.04825 1.12000 1.46984 1.22212 0.95221 0.90193 1.00208 1.21559 0.94611 0.99496 0.99802 1.21590 0.99561 0.95865 0.98852 1.21587 0.94315 0.97228 1.02406 1.22071 0.95909 0.96979 0.92164 1.55939 1.83689 1.19716 1.27683 1.01810 0.73608 0.73101 0.72410 1.93602 1.81578 1.63125 1.57976 1.93499 1.65602 1.56244 1.82831 1.57688 1.43567 1.26040 1.55995 1.21359 1.00127 0.84501 0.99342 1.18675 0.87110 0.92423 0.85097 0.92477 1.22135 1.00519 0.99437 0.98545 1.21356 1.30855 1.05528 0.98182 0.91977 1.24903 0.95348 0.95092 0.98553 1.69864 1.32715 1.18431 1.31879 0.86512 0.78389 0.79891 0.82706 1.20719 1.21163 1.19849 0.91894 0.92152 0.90181 0.90150 0.94029 0.95421 0.89269 0.90859 0.91621 0.92013 0.92606 0.90933 0.91871 0.90901 0.95325 0.75433 0.94423 0.89962 0.92028 0.96809 0.89110 0.94989 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.51 37.16 0.35 -1.69 16 2 C 0.16 1.91 2.71 -67.94 -0.18 1.73 16 3 H 0.08 1.08 6.03 -51.93 -0.31 0.76 16 4 C 0.05 0.55 4.58 -3.83 -0.02 0.53 16 5 N -0.53 -5.98 4.38 -234.67 -1.03 -7.01 16 6 C 0.05 0.58 5.29 -3.83 -0.02 0.56 16 7 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 8 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 9 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 10 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 11 N -1.11 -16.50 5.25 -4.90 -0.03 -16.53 16 12 S 2.78 54.53 6.12 -107.50 -0.66 53.87 16 13 O -0.98 -23.39 16.70 -57.17 -0.95 -24.34 16 14 O -1.00 -20.24 15.79 -57.17 -0.90 -21.15 16 15 N -0.99 -20.14 2.79 -115.85 -0.32 -20.47 16 16 C 0.09 1.62 9.41 59.85 0.56 2.18 16 17 C 0.27 6.54 2.62 -69.08 -0.18 6.35 16 18 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 19 C -0.15 -3.26 8.68 37.16 0.32 -2.94 16 20 C -0.52 -13.95 7.99 -34.44 -0.28 -14.23 16 21 H 0.06 1.66 7.33 -52.48 -0.38 1.27 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 24 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.07 4.49 -51.93 -0.23 0.84 16 31 H 0.08 0.75 7.99 -51.93 -0.41 0.34 16 32 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 1.21 6.03 -51.93 -0.31 0.90 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 42 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 43 H 0.41 5.69 8.84 -34.46 -0.30 5.39 16 44 H 0.04 0.55 6.22 -51.93 -0.32 0.22 16 45 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 46 H 0.06 1.01 7.02 -51.92 -0.36 0.64 16 47 H 0.01 0.25 7.41 -51.93 -0.38 -0.13 16 48 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 49 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 50 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.45 387.83 -11.15 -42.60 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.67 Total: 4.51 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.04 Total: -9.33 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -0.75 Total: -68.17 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.86 Total: -45.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.66 Total: 53.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.45 -11.15 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330431707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.285 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds