Wall clock time and date at job start Tue Mar 31 2020 17:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46903 * 109.47578 * 185.00096 * 4 2 1 6 6 C 1.46847 * 110.99740 * 294.21029 * 5 4 2 7 7 C 1.53038 * 109.52463 * 174.16083 * 6 5 4 8 8 C 1.53115 * 109.27754 * 59.17501 * 7 6 5 9 9 C 1.53119 * 109.16541 * 302.34721 * 8 7 6 10 10 C 1.46842 * 111.00137 * 169.99980 * 5 4 2 11 11 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 12 12 S 1.65595 * 120.00465 * 265.00239 * 11 2 1 13 13 O 1.42105 * 106.40515 * 178.53580 * 12 11 2 14 14 O 1.42104 * 106.40235 * 311.45773 * 12 11 2 15 15 N 1.65597 * 107.21714 * 64.99837 * 12 11 2 16 16 C 1.46497 * 120.00329 * 269.99960 * 15 12 11 17 17 C 1.46504 * 119.99963 * 90.00434 * 15 12 11 18 18 H 1.08992 * 109.47290 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.46720 * 239.99790 * 17 15 12 20 20 C 1.50703 * 109.47360 * 120.00059 * 17 15 12 21 21 H 1.08006 * 119.99635 * 359.97438 * 20 17 15 22 22 C 1.37874 * 120.00314 * 179.97438 * 20 17 15 23 23 N 1.31524 * 119.99873 * 359.97438 * 22 20 17 24 24 Si 1.86792 * 120.00421 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47321 * 89.99938 * 24 22 20 26 26 H 1.48496 * 109.47495 * 210.00125 * 24 22 20 27 27 H 1.48505 * 109.46953 * 330.00030 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 1.09001 * 109.46697 * 294.17565 * 6 5 4 34 34 H 1.08997 * 109.46416 * 54.14155 * 6 5 4 35 35 H 1.09009 * 109.50093 * 299.23866 * 7 6 5 36 36 H 1.08998 * 109.54055 * 179.14296 * 7 6 5 37 37 H 1.09008 * 109.52304 * 182.44537 * 8 7 6 38 38 H 1.09000 * 109.57632 * 62.28884 * 8 7 6 39 39 H 1.09000 * 109.50494 * 297.71685 * 9 8 7 40 40 H 1.08998 * 109.50324 * 177.58948 * 9 8 7 41 41 H 1.08993 * 109.46686 * 305.85978 * 10 5 4 42 42 H 1.09009 * 109.46384 * 65.82379 * 10 5 4 43 43 H 0.97006 * 120.00024 * 85.00109 * 11 2 1 44 44 H 1.09006 * 109.47109 * 89.99934 * 16 15 12 45 45 H 1.09003 * 109.47919 * 210.00260 * 16 15 12 46 46 H 1.09007 * 109.47206 * 330.00359 * 16 15 12 47 47 H 1.08998 * 109.47428 * 59.99931 * 19 17 15 48 48 H 1.09004 * 109.47262 * 180.02562 * 19 17 15 49 49 H 1.09002 * 109.47736 * 299.99920 * 19 17 15 50 50 H 0.96992 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.1306 0.4993 -1.2658 7 6 5.6405 0.3642 -1.0559 8 6 6.2202 -0.5569 -2.1330 9 6 5.5170 -1.9153 -2.0643 10 6 4.0106 -1.7141 -2.2449 11 7 2.0183 -0.6905 1.1962 12 16 2.4121 0.1772 2.5505 13 8 2.8123 -0.7697 3.5316 14 8 3.2436 1.2444 2.1156 15 7 1.0168 0.8704 3.1114 16 6 0.6184 2.1993 2.6409 17 6 0.1806 0.1547 4.0784 18 1 0.6343 -0.8095 4.3075 19 6 -1.2118 -0.0657 3.4838 20 6 0.0644 0.9685 5.3415 21 1 0.5639 1.9232 5.4166 22 6 -0.6794 0.4944 6.4011 23 7 -1.2880 -0.6680 6.3094 24 14 -0.8229 1.5027 7.9669 25 1 -1.9977 2.4056 7.8684 26 1 -0.9940 0.5927 9.1278 27 1 0.4091 2.3115 8.1494 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9378 0.9369 -2.2453 34 1 3.7125 1.1431 -0.4920 35 1 5.8345 -0.0605 -0.0709 36 1 6.1077 1.3464 -1.1270 37 1 7.2883 -0.6906 -1.9616 38 1 6.0617 -0.1139 -3.1162 39 1 5.7089 -2.3759 -1.0952 40 1 5.8953 -2.5614 -2.8564 41 1 3.5054 -2.6778 -2.1824 42 1 3.8184 -1.2661 -3.2199 43 1 2.1110 -1.6561 1.1950 44 1 -0.0046 2.0985 1.7522 45 1 0.0555 2.7083 3.4234 46 1 1.5080 2.7802 2.3970 47 1 -1.1278 -0.6543 2.5703 48 1 -1.8341 -0.5978 4.2034 49 1 -1.6657 0.8984 3.2544 50 1 -1.8115 -1.0014 7.0548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330431707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:04 Heat of formation + Delta-G solvation = -105.654054 kcal Electronic energy + Delta-G solvation = -29427.241275 eV Core-core repulsion = 25614.794562 eV Total energy + Delta-G solvation = -3812.446713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.12333 -38.24430 -37.94338 -37.23587 -36.77710 -34.49872 -33.81374 -31.69637 -30.93081 -30.78940 -27.42703 -27.06970 -26.88533 -24.30509 -23.76380 -22.54627 -21.83797 -20.60499 -20.21246 -18.84827 -18.54022 -18.05357 -17.24073 -16.98930 -16.67405 -16.09988 -15.67934 -15.46768 -15.22847 -15.11817 -14.94824 -14.51737 -14.45616 -14.33678 -13.90648 -13.78666 -13.59711 -13.39887 -13.23978 -13.12494 -13.02991 -12.99667 -12.86625 -12.68884 -12.63926 -12.56755 -12.29727 -12.18774 -12.09466 -12.07305 -11.93204 -11.80127 -11.58819 -11.23165 -11.12958 -11.06493 -10.47861 -10.32493 -9.59448 -9.14432 -8.09741 -6.22966 -0.19343 1.42137 1.44592 1.53876 2.16886 2.44805 2.72318 3.00400 3.18356 3.56010 3.77502 3.93389 4.00644 4.08889 4.12935 4.27094 4.32277 4.39391 4.49646 4.55640 4.64568 4.69723 4.73499 4.74924 4.79791 4.82093 4.88217 4.98868 4.99910 5.05472 5.08520 5.09739 5.10781 5.19912 5.25035 5.29097 5.35189 5.38871 5.50427 5.53514 5.64233 5.75914 5.92433 6.14684 6.20746 6.27590 6.33866 6.37142 6.85030 7.45673 8.94165 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.003399 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.030369 B = 8236.526537 C = 8594.556677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.151 3.849 3 H 0.078 0.922 4 C 0.058 3.942 5 N -0.551 5.551 6 C 0.050 3.950 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.118 4.118 10 C 0.057 3.943 11 N -1.098 6.098 12 S 2.796 3.204 13 O -1.028 7.028 14 O -1.008 7.008 15 N -0.995 5.995 16 C 0.090 3.910 17 C 0.277 3.723 18 H 0.020 0.980 19 C -0.131 4.131 20 C -0.539 4.539 21 H 0.056 0.944 22 C 0.017 3.983 23 N -0.913 5.913 24 Si 0.954 3.046 25 H -0.269 1.269 26 H -0.284 1.284 27 H -0.276 1.276 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.419 0.581 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.040 0.960 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 0.209 -21.833 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.071 4.071 5 N -0.276 5.276 6 C -0.077 4.077 7 C -0.159 4.159 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.070 4.070 11 N -0.860 5.860 12 S 2.805 3.195 13 O -1.012 7.012 14 O -0.991 6.991 15 N -0.837 5.837 16 C -0.056 4.056 17 C 0.172 3.828 18 H 0.038 0.962 19 C -0.191 4.191 20 C -0.578 4.578 21 H 0.074 0.926 22 C -0.182 4.182 23 N -0.553 5.553 24 Si 0.780 3.220 25 H -0.194 1.194 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.690 0.185 -20.912 21.957 hybrid contribution -0.596 0.269 0.572 0.869 sum 6.095 0.454 -20.339 21.238 Atomic orbital electron populations 1.22449 0.93955 1.03603 1.03500 1.20934 0.94320 0.95965 0.84409 0.90353 1.22368 0.87245 1.01898 0.95607 1.61791 1.05484 1.11956 1.48373 1.22135 0.95172 0.90358 1.00079 1.21579 0.94934 1.00139 0.99204 1.21560 0.99769 0.95518 0.98539 1.21604 0.94463 0.97303 1.02195 1.22121 0.95912 0.96986 0.92029 1.55527 1.83554 1.19808 1.27105 1.01150 0.73302 0.72553 0.72516 1.93530 1.82570 1.64485 1.60614 1.93482 1.65908 1.56787 1.82941 1.57529 1.43002 1.27168 1.55981 1.21529 1.00925 0.82996 1.00128 1.18324 0.88252 0.90719 0.85474 0.96234 1.21903 0.98528 0.99950 0.98700 1.21693 1.30767 1.05624 0.99760 0.92610 1.25623 0.95213 0.96089 1.01309 1.69982 1.33152 1.19509 1.32618 0.85621 0.78487 0.78633 0.79269 1.19395 1.21016 1.20078 0.91435 0.89357 0.92168 0.88850 0.91918 0.93927 0.91656 0.93570 0.91211 0.91467 0.91318 0.92666 0.89889 0.90043 0.94143 0.74616 0.91115 0.91174 0.91258 0.94149 0.91900 0.94030 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 9.51 71.98 0.68 -2.80 16 2 C 0.15 3.38 2.71 44.99 0.12 3.50 16 3 H 0.08 1.88 6.03 -2.39 -0.01 1.86 16 4 C 0.06 1.02 4.58 86.30 0.40 1.41 16 5 N -0.55 -11.34 4.38 -896.36 -3.93 -15.27 16 6 C 0.05 1.11 5.29 86.33 0.46 1.57 16 7 C -0.12 -2.63 6.09 30.65 0.19 -2.45 16 8 C -0.12 -1.93 6.00 30.67 0.18 -1.75 16 9 C -0.12 -1.90 6.09 30.65 0.19 -1.71 16 10 C 0.06 0.92 5.46 86.33 0.47 1.39 16 11 N -1.10 -31.88 5.25 -169.41 -0.89 -32.77 16 12 S 2.80 111.25 6.12 -56.49 -0.35 110.90 16 13 O -1.03 -51.02 16.70 -128.00 -2.14 -53.16 16 14 O -1.01 -41.28 15.79 -128.00 -2.02 -43.30 16 15 N -1.00 -40.63 2.79 -520.43 -1.45 -42.08 16 16 C 0.09 3.04 9.41 127.77 1.20 4.24 16 17 C 0.28 13.63 2.62 44.24 0.12 13.74 16 18 H 0.02 1.12 6.91 -2.39 -0.02 1.10 16 19 C -0.13 -5.79 8.68 71.98 0.62 -5.16 16 20 C -0.54 -29.43 7.99 25.60 0.20 -29.23 16 21 H 0.06 3.03 7.33 -2.91 -0.02 3.01 16 22 C 0.02 0.96 5.30 84.65 0.45 1.40 16 23 N -0.91 -51.68 11.32 21.45 0.24 -51.44 16 24 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.45 4.49 -2.38 -0.01 1.44 16 31 H 0.09 1.42 7.99 -2.39 -0.02 1.40 16 32 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.74 6.03 -2.39 -0.01 1.73 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.17 8.01 -2.39 -0.02 1.15 16 42 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.42 11.33 8.84 -96.74 -0.85 10.48 16 44 H 0.07 1.91 6.22 -2.38 -0.01 1.90 16 45 H 0.07 2.54 7.02 -2.39 -0.02 2.53 16 46 H 0.07 2.22 7.02 -2.38 -0.02 2.20 16 47 H 0.04 1.51 7.41 -2.39 -0.02 1.49 16 48 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 49 H 0.04 1.70 7.67 -2.39 -0.02 1.69 16 50 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.25 387.83 -3.15 -72.41 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.07 Total: 24.82 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.28 Total: -15.85 kcal Atomic # 7 Polarization: -135.53 SS G_CDS: -6.03 Total: -141.56 kcal Atomic # 8 Polarization: -92.30 SS G_CDS: -4.16 Total: -96.46 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 111.25 SS G_CDS: -0.35 Total: 110.90 kcal Total: -69.25 -3.15 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330431707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.246 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds