Wall clock time and date at job start Tue Mar 31 2020 17:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47340 * 2 1 4 4 C 1.53005 * 109.46809 * 240.00122 * 2 1 3 5 5 N 1.46493 * 109.47062 * 64.99617 * 4 2 1 6 6 S 1.65608 * 119.99916 * 164.99917 * 5 4 2 7 7 O 1.42093 * 106.40109 * 178.26884 * 6 5 4 8 8 O 1.42107 * 106.40103 * 311.18868 * 6 5 4 9 9 N 1.65596 * 107.21615 * 64.72375 * 6 5 4 10 10 C 1.46497 * 120.00628 * 270.00019 * 9 6 5 11 11 C 1.46506 * 119.99933 * 90.00209 * 9 6 5 12 12 C 1.50702 * 109.47037 * 94.99446 * 11 9 6 13 13 H 1.07999 * 119.99724 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99996 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47423 * 90.00040 * 16 14 12 18 18 H 1.48498 * 109.47142 * 210.00380 * 16 14 12 19 19 H 1.48500 * 109.46965 * 330.00087 * 16 14 12 20 20 C 1.52998 * 109.47533 * 120.00225 * 2 1 3 21 21 N 1.46902 * 109.47076 * 294.99921 * 20 2 1 22 22 C 1.46843 * 110.99765 * 294.21302 * 21 20 2 23 23 C 1.53040 * 109.52252 * 174.16034 * 22 21 20 24 24 C 1.53122 * 109.27767 * 59.17636 * 23 22 21 25 25 C 1.53114 * 109.16043 * 302.34304 * 24 23 22 26 26 C 1.46845 * 111.00105 * 169.99662 * 21 20 2 27 27 H 1.09006 * 109.46462 * 299.99599 * 1 2 3 28 28 H 1.08997 * 109.47410 * 60.00075 * 1 2 3 29 29 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46785 * 304.99552 * 4 2 1 31 31 H 1.08994 * 109.46912 * 185.00133 * 4 2 1 32 32 H 0.97000 * 120.00740 * 344.72579 * 5 4 2 33 33 H 1.09000 * 109.47287 * 89.99789 * 10 9 6 34 34 H 1.08999 * 109.47811 * 210.00227 * 10 9 6 35 35 H 1.08997 * 109.46878 * 330.00582 * 10 9 6 36 36 H 1.08991 * 109.47548 * 214.99883 * 11 9 6 37 37 H 1.09008 * 109.47113 * 335.00056 * 11 9 6 38 38 H 0.97005 * 120.00497 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47272 * 54.99472 * 20 2 1 40 40 H 1.08997 * 109.47588 * 174.99674 * 20 2 1 41 41 H 1.09001 * 109.46312 * 294.16980 * 22 21 20 42 42 H 1.09001 * 109.46932 * 54.14060 * 22 21 20 43 43 H 1.09001 * 109.50586 * 299.23357 * 23 22 21 44 44 H 1.09006 * 109.50314 * 179.11235 * 23 22 21 45 45 H 1.09007 * 109.51861 * 182.44397 * 24 23 22 46 46 H 1.08998 * 109.52613 * 62.25370 * 24 23 22 47 47 H 1.09002 * 109.50671 * 297.71743 * 25 24 23 48 48 H 1.08997 * 109.50551 * 177.59870 * 25 24 23 49 49 H 1.09002 * 109.46395 * 305.85537 * 26 21 20 50 50 H 1.09000 * 109.46214 * 65.82993 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6523 0.0353 -2.4424 6 16 2.3697 -0.2907 -3.8989 7 8 1.7572 0.5698 -4.8494 8 8 3.7704 -0.3135 -3.6602 9 7 1.9423 -1.8338 -4.3213 10 6 2.7750 -2.9647 -3.9046 11 6 0.7313 -2.0681 -5.1119 12 6 1.0934 -2.1531 -6.5723 13 1 2.1227 -2.0440 -6.8806 14 6 0.1109 -2.3713 -7.5146 15 7 -1.1424 -2.5046 -7.1390 16 14 0.5598 -2.4774 -9.3247 17 1 0.8638 -3.8874 -9.6775 18 1 -0.5798 -1.9962 -10.1464 19 1 1.7522 -1.6328 -9.5893 20 6 2.0401 -0.7213 1.2492 21 7 1.6516 0.0374 2.4456 22 6 2.3293 1.3394 2.4862 23 6 1.7933 2.1585 3.6626 24 6 2.0398 1.3929 4.9656 25 6 1.3641 0.0217 4.8782 26 6 1.9126 -0.7355 3.6666 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6053 -1.7198 -1.2951 31 1 3.1262 -0.7995 -1.2057 32 1 0.9726 0.7245 -2.3801 33 1 2.4334 -3.3301 -2.9362 34 1 2.6984 -3.7637 -4.6420 35 1 3.8131 -2.6418 -3.8253 36 1 0.2673 -3.0029 -4.7975 37 1 0.0323 -1.2458 -4.9582 38 1 -1.8338 -2.6577 -7.8020 39 1 1.6055 -1.7198 1.2951 40 1 3.1264 -0.7995 1.2055 41 1 3.4017 1.1870 2.6085 42 1 2.1427 1.8753 1.5555 43 1 0.7235 2.3232 3.5340 44 1 2.3078 3.1187 3.7019 45 1 1.6208 1.9528 5.8018 46 1 3.1116 1.2622 5.1142 47 1 0.2876 0.1527 4.7687 48 1 1.5719 -0.5448 5.7859 49 1 1.4231 -1.7067 3.5933 50 1 2.9868 -0.8782 3.7834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330490200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:53 Heat of formation + Delta-G solvation = -90.255512 kcal Electronic energy + Delta-G solvation = -27849.948843 eV Core-core repulsion = 24038.169861 eV Total energy + Delta-G solvation = -3811.778982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.52936 -37.01621 -36.48757 -35.45692 -35.12443 -33.93791 -32.41461 -31.48851 -31.00291 -27.75863 -26.84939 -25.60471 -25.01691 -23.49673 -22.93723 -22.26499 -20.27288 -19.90312 -18.81763 -17.27341 -16.85751 -16.60821 -16.27473 -15.70967 -15.43010 -15.09353 -14.90258 -14.74520 -14.33576 -14.23369 -13.84629 -13.57340 -13.39246 -13.26491 -13.06038 -12.92946 -12.54283 -12.29162 -12.14973 -12.09479 -11.64635 -11.56034 -11.52262 -11.41781 -11.30539 -11.14252 -11.11568 -11.05007 -10.94789 -10.86560 -10.67810 -10.62350 -10.49701 -10.40092 -10.01177 -9.74632 -9.25458 -8.55981 -8.43100 -8.04273 -6.04802 -4.08624 1.27823 3.32561 3.38931 3.44429 3.47940 3.67200 4.17669 4.45774 4.46558 4.48489 4.58738 4.70791 4.82474 4.85729 4.94382 5.08191 5.12776 5.16899 5.27065 5.30428 5.31926 5.37819 5.44382 5.48274 5.56089 5.60237 5.62094 5.67050 5.69427 5.78670 5.79788 5.85956 5.92376 5.99983 6.04665 6.09969 6.22291 6.33001 6.34117 6.57971 6.82360 6.84519 7.14557 7.29507 7.45184 7.64214 7.92869 8.22474 8.93793 9.56441 11.03785 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.002396 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.530661 B =11684.547892 C =11879.604800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.078 0.922 4 C 0.126 3.874 5 N -1.132 6.132 6 S 2.783 3.217 7 O -0.965 6.965 8 O -1.000 7.000 9 N -0.996 5.996 10 C 0.095 3.905 11 C 0.258 3.742 12 C -0.528 4.528 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.060 3.940 21 N -0.534 5.534 22 C 0.050 3.950 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.117 4.117 26 C 0.056 3.944 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 4.022 24.621 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.002 4.002 5 N -0.892 5.892 6 S 2.790 3.210 7 O -0.949 6.949 8 O -0.984 6.984 9 N -0.839 5.839 10 C -0.052 4.052 11 C 0.136 3.864 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.068 4.068 21 N -0.258 5.258 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.072 4.072 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.245 0.755 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.887 4.508 24.014 24.918 hybrid contribution 0.446 -0.294 -0.765 0.933 sum 5.333 4.214 23.250 24.223 Atomic orbital electron populations 1.21726 0.93796 1.02235 1.01842 1.21360 0.97549 1.00059 0.92530 0.90371 1.21182 0.99680 0.94830 0.84496 1.56227 1.57596 1.50329 1.25048 1.01875 0.73217 0.73450 0.72419 1.93641 1.77593 1.65239 1.58391 1.93515 1.31487 1.87196 1.86165 1.57581 1.37671 1.22329 1.66290 1.21357 0.93939 0.90705 0.99188 1.19040 0.79963 0.97839 0.89575 1.21501 0.94349 1.49365 0.91554 0.92197 1.24934 0.94820 0.95048 0.99281 1.69918 0.99957 1.49331 1.34310 0.86510 0.78251 0.78179 0.84597 1.20640 1.21066 1.19723 1.22107 0.98105 0.97446 0.89182 1.61863 1.58503 1.03698 1.01779 1.22174 0.95604 0.90601 0.99409 1.21584 1.02089 0.97822 0.93971 1.21583 1.00351 0.96324 0.97698 1.21578 1.01117 0.95847 0.96891 1.22076 0.98505 0.96896 0.89756 0.91500 0.92909 0.92655 0.91806 0.90947 0.75478 0.94404 0.90433 0.91639 0.94757 0.94427 0.92709 0.90240 0.94510 0.95027 0.90242 0.91046 0.91701 0.91951 0.92439 0.91043 0.91733 0.90713 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.95 37.16 0.33 -1.06 16 2 C -0.09 -0.93 2.42 -90.62 -0.22 -1.15 16 3 H 0.08 0.77 6.22 -51.93 -0.32 0.45 16 4 C 0.13 1.50 5.64 -4.04 -0.02 1.47 16 5 N -1.13 -16.57 5.93 -10.62 -0.06 -16.63 16 6 S 2.78 54.93 6.10 -107.50 -0.66 54.27 16 7 O -0.96 -23.16 17.11 -57.17 -0.98 -24.14 16 8 O -1.00 -20.76 16.22 -57.17 -0.93 -21.69 16 9 N -1.00 -20.55 3.23 -123.05 -0.40 -20.94 16 10 C 0.09 1.61 10.68 59.85 0.64 2.25 16 11 C 0.26 6.47 5.08 -5.19 -0.03 6.44 16 12 C -0.53 -14.93 9.38 -34.44 -0.32 -15.25 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.06 0.52 4.35 -3.82 -0.02 0.51 16 21 N -0.53 -4.49 4.11 -234.67 -0.96 -5.45 16 22 C 0.05 0.40 5.30 -3.83 -0.02 0.38 16 23 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 24 C -0.12 -0.78 6.00 -26.61 -0.16 -0.94 16 25 C -0.12 -0.76 6.09 -26.65 -0.16 -0.92 16 26 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 27 H 0.07 0.66 7.75 -51.93 -0.40 0.25 16 28 H 0.05 0.55 6.89 -51.93 -0.36 0.20 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.87 7.76 -51.93 -0.40 0.46 16 32 H 0.41 5.44 7.40 -34.47 -0.26 5.19 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 36 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.04 1.00 7.61 -51.92 -0.40 0.61 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 0.66 7.99 -51.93 -0.41 0.24 16 40 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.66 6.12 -51.93 -0.32 0.35 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 50 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.49 400.51 -11.60 -45.09 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -9.11 Total: -0.80 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.26 Total: -7.20 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.69 Total: -68.55 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.91 Total: -45.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.66 Total: 54.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.49 -11.60 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.164 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds