Wall clock time and date at job start Tue Mar 31 2020 17:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47340 * 2 1 4 4 C 1.53005 * 109.46809 * 240.00122 * 2 1 3 5 5 N 1.46493 * 109.47062 * 64.99617 * 4 2 1 6 6 S 1.65608 * 119.99916 * 164.99917 * 5 4 2 7 7 O 1.42093 * 106.40109 * 178.26884 * 6 5 4 8 8 O 1.42107 * 106.40103 * 311.18868 * 6 5 4 9 9 N 1.65596 * 107.21615 * 64.72375 * 6 5 4 10 10 C 1.46497 * 120.00628 * 270.00019 * 9 6 5 11 11 C 1.46506 * 119.99933 * 90.00209 * 9 6 5 12 12 C 1.50702 * 109.47037 * 94.99446 * 11 9 6 13 13 H 1.07999 * 119.99724 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99996 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47423 * 90.00040 * 16 14 12 18 18 H 1.48498 * 109.47142 * 210.00380 * 16 14 12 19 19 H 1.48500 * 109.46965 * 330.00087 * 16 14 12 20 20 C 1.52998 * 109.47533 * 120.00225 * 2 1 3 21 21 N 1.46902 * 109.47076 * 294.99921 * 20 2 1 22 22 C 1.46843 * 110.99765 * 294.21302 * 21 20 2 23 23 C 1.53040 * 109.52252 * 174.16034 * 22 21 20 24 24 C 1.53122 * 109.27767 * 59.17636 * 23 22 21 25 25 C 1.53114 * 109.16043 * 302.34304 * 24 23 22 26 26 C 1.46845 * 111.00105 * 169.99662 * 21 20 2 27 27 H 1.09006 * 109.46462 * 299.99599 * 1 2 3 28 28 H 1.08997 * 109.47410 * 60.00075 * 1 2 3 29 29 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46785 * 304.99552 * 4 2 1 31 31 H 1.08994 * 109.46912 * 185.00133 * 4 2 1 32 32 H 0.97000 * 120.00740 * 344.72579 * 5 4 2 33 33 H 1.09000 * 109.47287 * 89.99789 * 10 9 6 34 34 H 1.08999 * 109.47811 * 210.00227 * 10 9 6 35 35 H 1.08997 * 109.46878 * 330.00582 * 10 9 6 36 36 H 1.08991 * 109.47548 * 214.99883 * 11 9 6 37 37 H 1.09008 * 109.47113 * 335.00056 * 11 9 6 38 38 H 0.97005 * 120.00497 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47272 * 54.99472 * 20 2 1 40 40 H 1.08997 * 109.47588 * 174.99674 * 20 2 1 41 41 H 1.09001 * 109.46312 * 294.16980 * 22 21 20 42 42 H 1.09001 * 109.46932 * 54.14060 * 22 21 20 43 43 H 1.09001 * 109.50586 * 299.23357 * 23 22 21 44 44 H 1.09006 * 109.50314 * 179.11235 * 23 22 21 45 45 H 1.09007 * 109.51861 * 182.44397 * 24 23 22 46 46 H 1.08998 * 109.52613 * 62.25370 * 24 23 22 47 47 H 1.09002 * 109.50671 * 297.71743 * 25 24 23 48 48 H 1.08997 * 109.50551 * 177.59870 * 25 24 23 49 49 H 1.09002 * 109.46395 * 305.85537 * 26 21 20 50 50 H 1.09000 * 109.46214 * 65.82993 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6523 0.0353 -2.4424 6 16 2.3697 -0.2907 -3.8989 7 8 1.7572 0.5698 -4.8494 8 8 3.7704 -0.3135 -3.6602 9 7 1.9423 -1.8338 -4.3213 10 6 2.7750 -2.9647 -3.9046 11 6 0.7313 -2.0681 -5.1119 12 6 1.0934 -2.1531 -6.5723 13 1 2.1227 -2.0440 -6.8806 14 6 0.1109 -2.3713 -7.5146 15 7 -1.1424 -2.5046 -7.1390 16 14 0.5598 -2.4774 -9.3247 17 1 0.8638 -3.8874 -9.6775 18 1 -0.5798 -1.9962 -10.1464 19 1 1.7522 -1.6328 -9.5893 20 6 2.0401 -0.7213 1.2492 21 7 1.6516 0.0374 2.4456 22 6 2.3293 1.3394 2.4862 23 6 1.7933 2.1585 3.6626 24 6 2.0398 1.3929 4.9656 25 6 1.3641 0.0217 4.8782 26 6 1.9126 -0.7355 3.6666 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6053 -1.7198 -1.2951 31 1 3.1262 -0.7995 -1.2057 32 1 0.9726 0.7245 -2.3801 33 1 2.4334 -3.3301 -2.9362 34 1 2.6984 -3.7637 -4.6420 35 1 3.8131 -2.6418 -3.8253 36 1 0.2673 -3.0029 -4.7975 37 1 0.0323 -1.2458 -4.9582 38 1 -1.8338 -2.6577 -7.8020 39 1 1.6055 -1.7198 1.2951 40 1 3.1264 -0.7995 1.2055 41 1 3.4017 1.1870 2.6085 42 1 2.1427 1.8753 1.5555 43 1 0.7235 2.3232 3.5340 44 1 2.3078 3.1187 3.7019 45 1 1.6208 1.9528 5.8018 46 1 3.1116 1.2622 5.1142 47 1 0.2876 0.1527 4.7687 48 1 1.5719 -0.5448 5.7859 49 1 1.4231 -1.7067 3.5933 50 1 2.9868 -0.8782 3.7834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330490200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:52 Heat of formation + Delta-G solvation = -114.101926 kcal Electronic energy + Delta-G solvation = -27850.982901 eV Core-core repulsion = 24038.169861 eV Total energy + Delta-G solvation = -3812.813040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17121 -38.31913 -37.76859 -37.18768 -36.83635 -34.77490 -34.49160 -32.29347 -31.62411 -29.65579 -27.63998 -26.79919 -26.39420 -24.19817 -24.09273 -23.60522 -21.08651 -20.53108 -20.24889 -18.95805 -18.39894 -18.18085 -17.67723 -16.99364 -16.48482 -16.24092 -15.86312 -15.78292 -15.35999 -15.15549 -15.02949 -14.88717 -14.47898 -14.14721 -14.06822 -14.03549 -13.88516 -13.67862 -13.31929 -13.20561 -13.13487 -13.04030 -12.97694 -12.91237 -12.73977 -12.47080 -12.37711 -12.09309 -12.05959 -11.97607 -11.82504 -11.77312 -11.71211 -11.52816 -11.21065 -11.04875 -10.59844 -10.44238 -9.76992 -9.20010 -8.20053 -6.31713 -0.29105 1.38720 1.41169 1.51696 2.06674 2.40702 2.66243 2.94874 3.10818 3.48802 3.82570 3.89191 3.96772 3.98520 4.08669 4.12115 4.15238 4.35724 4.46799 4.49900 4.55118 4.62014 4.66568 4.73177 4.76433 4.78833 4.82966 4.87131 4.92532 4.99764 5.03273 5.09109 5.10398 5.10974 5.19592 5.22818 5.27211 5.33632 5.38767 5.48515 5.51202 5.52460 5.70613 5.87760 6.09900 6.16392 6.19076 6.23458 6.76624 7.36990 8.87402 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.002396 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.530661 B =11684.547892 C =11879.604800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.078 0.922 4 C 0.118 3.882 5 N -1.118 6.118 6 S 2.800 3.200 7 O -1.013 7.013 8 O -1.010 7.010 9 N -1.003 6.003 10 C 0.087 3.913 11 C 0.273 3.727 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.063 3.937 21 N -0.540 5.540 22 C 0.048 3.952 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.114 4.114 26 C 0.054 3.946 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 3.541 25.868 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.882 5.882 6 S 2.807 3.193 7 O -0.997 6.997 8 O -0.994 6.994 9 N -0.844 5.844 10 C -0.058 4.058 11 C 0.149 3.851 12 C -0.589 4.589 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.563 5.563 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.200 1.200 20 C -0.066 4.066 21 N -0.264 5.264 22 C -0.079 4.079 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.074 4.074 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.442 4.013 25.277 26.165 hybrid contribution 0.303 -0.132 -1.039 1.090 sum 5.745 3.881 24.238 25.210 Atomic orbital electron populations 1.21688 0.93879 1.02088 1.01583 1.21276 0.97306 0.99999 0.92072 0.90341 1.21464 1.00181 0.95260 0.83930 1.55783 1.57519 1.50622 1.24231 1.01134 0.72821 0.72626 0.72670 1.93571 1.78360 1.66674 1.61079 1.93496 1.32200 1.87189 1.86471 1.57459 1.36789 1.23682 1.66504 1.21600 0.94029 0.89448 1.00735 1.18594 0.81131 0.96551 0.88814 1.21844 0.94048 1.49447 0.93516 0.93093 1.25742 0.94827 0.94726 1.03528 1.70003 1.00720 1.49881 1.35733 0.85586 0.77881 0.78810 0.79620 1.19005 1.20366 1.20042 1.22055 0.98168 0.97577 0.88750 1.61872 1.58634 1.03900 1.02038 1.22194 0.95466 0.90629 0.99657 1.21572 1.01668 0.98122 0.93932 1.21582 1.00424 0.96270 0.97567 1.21568 1.00615 0.96000 0.97013 1.22129 0.98569 0.97090 0.89582 0.91231 0.93669 0.92725 0.90729 0.90546 0.74455 0.90713 0.91205 0.90730 0.95262 0.96551 0.92372 0.89574 0.94364 0.95319 0.90762 0.91675 0.90992 0.91145 0.92380 0.91677 0.90541 0.90327 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.95 71.98 0.64 -1.88 16 2 C -0.09 -1.56 2.42 -10.79 -0.03 -1.58 16 3 H 0.08 1.44 6.22 -2.39 -0.01 1.43 16 4 C 0.12 2.60 5.64 86.38 0.49 3.09 16 5 N -1.12 -31.77 5.93 -187.50 -1.11 -32.89 16 6 S 2.80 109.96 6.10 -56.49 -0.34 109.61 16 7 O -1.01 -49.54 17.11 -128.00 -2.19 -51.73 16 8 O -1.01 -41.09 16.22 -128.00 -2.08 -43.17 16 9 N -1.00 -41.03 3.23 -543.22 -1.75 -42.78 16 10 C 0.09 2.84 10.68 127.77 1.36 4.20 16 11 C 0.27 13.85 5.08 85.63 0.43 14.28 16 12 C -0.55 -31.36 9.38 25.60 0.24 -31.12 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.92 -54.40 13.29 21.45 0.28 -54.11 16 16 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 C 0.06 0.98 4.35 86.30 0.38 1.36 16 21 N -0.54 -8.23 4.11 -896.35 -3.68 -11.91 16 22 C 0.05 0.72 5.30 86.33 0.46 1.18 16 23 C -0.12 -1.46 6.09 30.65 0.19 -1.27 16 24 C -0.12 -1.34 6.00 30.67 0.18 -1.15 16 25 C -0.11 -1.29 6.09 30.65 0.19 -1.10 16 26 C 0.05 0.70 5.46 86.33 0.47 1.18 16 27 H 0.07 1.27 7.75 -2.38 -0.02 1.25 16 28 H 0.04 0.90 6.89 -2.39 -0.02 0.89 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.67 7.76 -2.39 -0.02 1.65 16 32 H 0.42 10.86 7.40 -96.75 -0.72 10.15 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 35 H 0.07 2.28 7.02 -2.39 -0.02 2.27 16 36 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 37 H 0.02 0.90 7.61 -2.38 -0.02 0.88 16 38 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.09 1.24 7.99 -2.38 -0.02 1.22 16 40 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 41 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.07 1.17 6.12 -2.39 -0.01 1.15 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 49 H 0.08 0.96 8.02 -2.39 -0.02 0.94 16 50 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -71.08 400.51 -3.20 -74.28 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.18 Total: 17.40 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.47 Total: -11.73 kcal Atomic # 7 Polarization: -135.43 SS G_CDS: -6.26 Total: -141.70 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -4.27 Total: -94.90 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 109.96 SS G_CDS: -0.34 Total: 109.61 kcal Total: -71.08 -3.20 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.826 kcal (2) G-P(sol) polarization free energy of solvation -71.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds