Wall clock time and date at job start Tue Mar 31 2020 17:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46855 * 2 1 4 4 C 1.53008 * 109.46911 * 240.00422 * 2 1 3 5 5 N 1.46494 * 109.47109 * 184.52129 * 4 2 1 6 6 S 1.65603 * 120.00267 * 163.92287 * 5 4 2 7 7 O 1.42094 * 106.40220 * 178.66052 * 6 5 4 8 8 O 1.42096 * 106.40036 * 311.58391 * 6 5 4 9 9 N 1.65604 * 107.21185 * 65.12332 * 6 5 4 10 10 C 1.46508 * 119.99516 * 274.05389 * 9 6 5 11 11 C 1.46495 * 120.00171 * 94.06181 * 9 6 5 12 12 C 1.50696 * 109.47531 * 94.75037 * 11 9 6 13 13 H 1.08008 * 119.99821 * 5.04560 * 12 11 9 14 14 C 1.37871 * 120.00468 * 185.03886 * 12 11 9 15 15 N 1.31513 * 120.00240 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99650 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47065 * 89.99832 * 16 14 12 18 18 H 1.48505 * 109.46748 * 209.99735 * 16 14 12 19 19 H 1.48498 * 109.47316 * 329.99714 * 16 14 12 20 20 N 1.46896 * 109.47043 * 120.00554 * 2 1 3 21 21 C 1.46839 * 110.99994 * 290.57971 * 20 2 1 22 22 C 1.53040 * 109.52526 * 185.84146 * 21 20 2 23 23 C 1.53123 * 109.27451 * 300.82470 * 22 21 20 24 24 C 1.53120 * 109.16407 * 57.65356 * 23 22 21 25 25 H 1.08998 * 109.50125 * 62.32222 * 24 23 22 26 26 C 1.52997 * 109.50427 * 182.40322 * 24 23 22 27 27 C 1.46844 * 111.00160 * 54.79446 * 20 2 1 28 28 H 1.08996 * 109.47113 * 299.99762 * 1 2 3 29 29 H 1.08995 * 109.47026 * 59.99418 * 1 2 3 30 30 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47211 * 304.52530 * 4 2 1 32 32 H 1.09009 * 109.46804 * 64.52591 * 4 2 1 33 33 H 0.97006 * 119.99995 * 343.93034 * 5 4 2 34 34 H 1.08998 * 109.46597 * 90.00767 * 10 9 6 35 35 H 1.09000 * 109.46643 * 210.00327 * 10 9 6 36 36 H 1.08998 * 109.47414 * 330.00508 * 10 9 6 37 37 H 1.08997 * 109.47105 * 214.75080 * 11 9 6 38 38 H 1.09004 * 109.46939 * 334.74834 * 11 9 6 39 39 H 0.97003 * 120.00189 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.46762 * 305.85709 * 21 20 2 41 41 H 1.09006 * 109.46341 * 65.82912 * 21 20 2 42 42 H 1.08994 * 109.50325 * 60.76239 * 22 21 20 43 43 H 1.09002 * 109.50741 * 180.88282 * 22 21 20 44 44 H 1.09007 * 109.52061 * 177.55511 * 23 22 21 45 45 H 1.09000 * 109.52544 * 297.67818 * 23 22 21 46 46 H 1.08998 * 109.46983 * 59.99847 * 26 24 23 47 47 H 1.08998 * 109.47166 * 180.02562 * 26 24 23 48 48 H 1.09002 * 109.47001 * 299.99871 * 26 24 23 49 49 H 1.08999 * 109.46276 * 294.17401 * 27 20 2 50 50 H 1.09000 * 109.46229 * 54.14343 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5009 -0.8162 -1.1962 6 16 4.2985 -1.8754 -2.1884 7 8 5.6843 -1.7082 -1.9226 8 8 3.6284 -3.1224 -2.0656 9 7 4.0561 -1.3656 -3.7453 10 6 2.8586 -1.7876 -4.4762 11 6 5.0393 -0.4928 -4.3917 12 6 6.0046 -1.3292 -5.1915 13 1 5.8493 -2.3942 -5.2826 14 6 7.0858 -0.7351 -5.8070 15 7 7.9279 -1.4649 -6.5053 16 14 7.3545 1.1068 -5.6489 17 1 8.1962 1.3837 -4.4572 18 1 8.0378 1.6135 -6.8661 19 1 6.0433 1.7872 -5.4977 20 7 2.0197 -0.6926 1.1993 21 6 1.7408 0.0904 2.4099 22 6 2.3901 -0.5877 3.6185 23 6 1.8297 -2.0052 3.7644 24 6 2.0906 -2.7843 2.4723 25 1 3.1650 -2.8679 2.3084 26 6 1.4810 -4.1828 2.5871 27 6 1.4500 -2.0425 1.2970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6120 -1.7227 -1.2909 32 1 1.7444 -0.1625 -2.1375 33 1 4.0011 -0.2588 -0.5797 34 1 2.0581 -1.0670 -4.3089 35 1 3.0830 -1.8406 -5.5415 36 1 2.5437 -2.7692 -4.1219 37 1 4.5263 0.2037 -5.0548 38 1 5.5855 0.0650 -3.6311 39 1 8.6888 -1.0469 -6.9380 40 1 2.1481 1.0948 2.2947 41 1 0.6632 0.1509 2.5630 42 1 3.4691 -0.6362 3.4723 43 1 2.1698 -0.0147 4.5192 44 1 2.3212 -2.5072 4.5979 45 1 0.7569 -1.9554 3.9506 46 1 0.4065 -4.0985 2.7495 47 1 1.6674 -4.7371 1.6672 48 1 1.9352 -4.7094 3.4265 49 1 0.3739 -1.9719 1.4553 50 1 1.6462 -2.5872 0.3734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330497852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:44 Heat of formation + Delta-G solvation = -80.841486 kcal Electronic energy + Delta-G solvation = -28895.277182 eV Core-core repulsion = 25083.906423 eV Total energy + Delta-G solvation = -3811.370760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.91456 -36.67109 -36.30423 -35.57836 -35.10725 -33.74206 -32.35600 -32.21042 -30.01823 -28.36130 -26.87266 -25.94628 -25.11369 -24.47981 -22.04409 -21.87248 -20.77414 -19.48937 -18.76959 -17.22724 -16.97825 -16.62206 -16.42057 -15.99073 -15.26883 -14.96641 -14.85143 -14.53196 -14.27018 -14.09019 -13.97181 -13.58246 -13.20015 -13.13931 -12.89248 -12.74225 -12.63018 -12.46963 -12.30310 -12.17024 -11.96859 -11.90256 -11.69835 -11.40267 -11.37522 -11.26622 -11.16060 -11.14998 -10.92932 -10.73746 -10.61648 -10.53475 -10.41763 -10.31800 -10.23671 -9.53157 -9.21344 -8.56156 -8.42888 -8.07956 -6.05752 -4.05054 1.25517 3.29955 3.35445 3.37324 3.51920 3.67741 4.21368 4.41453 4.46906 4.51926 4.64480 4.70302 4.86229 4.93377 4.98694 5.11102 5.12337 5.22456 5.25970 5.33706 5.35213 5.37003 5.41012 5.45850 5.51115 5.55929 5.60113 5.69086 5.70727 5.74307 5.78748 5.87327 5.92387 5.96786 6.00510 6.10660 6.13014 6.25820 6.28993 6.47276 6.76323 6.93288 6.95420 7.07365 7.27790 7.53214 7.61474 8.51692 8.98811 9.53781 11.07826 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003282 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.437903 B = 8529.142703 C = 8711.194352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.090 0.910 4 C 0.130 3.870 5 N -1.121 6.121 6 S 2.784 3.216 7 O -0.965 6.965 8 O -0.995 6.995 9 N -0.993 5.993 10 C 0.093 3.907 11 C 0.229 3.771 12 C -0.534 4.534 13 H 0.077 0.923 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.265 1.265 20 N -0.527 5.527 21 C 0.055 3.945 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.092 4.092 25 H 0.080 0.920 26 C -0.147 4.147 27 C 0.054 3.946 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.416 0.584 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.036 0.964 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.553 3.966 18.311 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.035 4.035 3 H 0.108 0.892 4 C 0.002 3.998 5 N -0.881 5.881 6 S 2.792 3.208 7 O -0.948 6.948 8 O -0.978 6.978 9 N -0.835 5.835 10 C -0.053 4.053 11 C 0.105 3.895 12 C -0.573 4.573 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.190 1.190 20 N -0.251 5.251 21 C -0.073 4.073 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.110 4.110 25 H 0.098 0.902 26 C -0.205 4.205 27 C -0.074 4.074 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.479 3.051 18.284 25.478 hybrid contribution -0.618 1.625 0.134 1.744 sum -18.098 4.676 18.418 26.241 Atomic orbital electron populations 1.22429 0.96829 1.02732 1.02595 1.21917 0.92957 0.98526 0.90109 0.89208 1.21248 0.80697 1.00948 0.96902 1.55962 1.14496 1.61597 1.56056 1.01868 0.72891 0.73469 0.72608 1.93635 1.30628 1.86100 1.84482 1.93515 1.76910 1.40998 1.86398 1.57431 1.30998 1.65374 1.29653 1.21392 0.85755 0.98642 0.99518 1.19402 0.86861 0.89848 0.93375 1.21401 1.08304 0.96738 1.30856 0.90451 1.24877 0.95333 0.98063 0.94682 1.69899 1.14316 1.35749 1.33396 0.86899 0.79035 0.85953 0.78105 1.19715 1.21012 1.19010 1.62013 1.58995 1.02462 1.01581 1.22088 0.98108 0.97062 0.90011 1.21589 1.01390 0.95818 0.96780 1.21640 1.00488 0.95620 0.97476 1.21175 1.01396 0.94317 0.94160 0.90172 1.21799 1.00382 0.96187 1.02157 1.22253 0.96170 0.89420 0.99560 0.92237 0.91554 0.91848 0.90792 0.91624 0.74990 0.94343 0.90247 0.91383 0.95086 0.95125 0.92534 0.90894 0.94932 0.90922 0.91790 0.91974 0.92526 0.93015 0.92131 0.92548 0.94634 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 8.46 37.16 0.31 -1.07 16 2 C 0.07 0.68 2.44 -67.71 -0.17 0.52 16 3 H 0.09 0.77 8.00 -51.93 -0.42 0.35 16 4 C 0.13 1.46 5.42 -4.04 -0.02 1.44 16 5 N -1.12 -15.95 5.80 -10.61 -0.06 -16.01 16 6 S 2.78 54.73 6.11 -107.50 -0.66 54.07 16 7 O -0.96 -23.27 16.98 -57.17 -0.97 -24.24 16 8 O -0.99 -20.66 16.27 -57.17 -0.93 -21.59 16 9 N -0.99 -20.10 3.23 -123.05 -0.40 -20.50 16 10 C 0.09 1.54 10.70 59.85 0.64 2.18 16 11 C 0.23 5.43 4.16 -5.20 -0.02 5.41 16 12 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 16 13 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 16 Si 0.87 21.37 27.37 -169.99 -4.65 16.72 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.00 6.69 56.52 0.38 -5.62 16 20 N -0.53 -5.18 4.30 -226.69 -0.98 -6.16 16 21 C 0.06 0.45 5.12 -3.84 -0.02 0.43 16 22 C -0.12 -0.94 6.09 -26.65 -0.16 -1.11 16 23 C -0.11 -0.93 5.29 -26.61 -0.14 -1.07 16 24 C -0.09 -0.89 2.88 -90.54 -0.26 -1.15 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 C -0.15 -1.30 9.20 37.16 0.34 -0.96 16 27 C 0.05 0.54 3.84 -3.84 -0.01 0.53 16 28 H 0.06 0.41 6.79 -51.93 -0.35 0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 31 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 32 H 0.07 0.66 8.04 -51.92 -0.42 0.24 16 33 H 0.42 5.49 8.61 -34.47 -0.30 5.19 16 34 H 0.04 0.49 8.04 -51.93 -0.42 0.07 16 35 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 36 H 0.07 1.08 7.06 -51.93 -0.37 0.71 16 37 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 38 H 0.03 0.73 6.65 -51.93 -0.35 0.39 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 40 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 41 H 0.03 0.25 6.85 -51.93 -0.36 -0.10 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.04 0.33 6.58 -51.93 -0.34 -0.01 16 50 H 0.08 1.00 6.28 -51.93 -0.33 0.67 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -34.88 392.76 -10.81 -45.69 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.91 Total: 1.72 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.05 Total: -8.57 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.66 Total: -69.73 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.90 Total: -45.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.65 Total: 16.72 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.66 Total: 54.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.88 -10.81 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.148 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds