Wall clock time and date at job start Tue Mar 31 2020 17:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46855 * 2 1 4 4 C 1.53008 * 109.46911 * 240.00422 * 2 1 3 5 5 N 1.46494 * 109.47109 * 184.52129 * 4 2 1 6 6 S 1.65603 * 120.00267 * 163.92287 * 5 4 2 7 7 O 1.42094 * 106.40220 * 178.66052 * 6 5 4 8 8 O 1.42096 * 106.40036 * 311.58391 * 6 5 4 9 9 N 1.65604 * 107.21185 * 65.12332 * 6 5 4 10 10 C 1.46508 * 119.99516 * 274.05389 * 9 6 5 11 11 C 1.46495 * 120.00171 * 94.06181 * 9 6 5 12 12 C 1.50696 * 109.47531 * 94.75037 * 11 9 6 13 13 H 1.08008 * 119.99821 * 5.04560 * 12 11 9 14 14 C 1.37871 * 120.00468 * 185.03886 * 12 11 9 15 15 N 1.31513 * 120.00240 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99650 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47065 * 89.99832 * 16 14 12 18 18 H 1.48505 * 109.46748 * 209.99735 * 16 14 12 19 19 H 1.48498 * 109.47316 * 329.99714 * 16 14 12 20 20 N 1.46896 * 109.47043 * 120.00554 * 2 1 3 21 21 C 1.46839 * 110.99994 * 290.57971 * 20 2 1 22 22 C 1.53040 * 109.52526 * 185.84146 * 21 20 2 23 23 C 1.53123 * 109.27451 * 300.82470 * 22 21 20 24 24 C 1.53120 * 109.16407 * 57.65356 * 23 22 21 25 25 H 1.08998 * 109.50125 * 62.32222 * 24 23 22 26 26 C 1.52997 * 109.50427 * 182.40322 * 24 23 22 27 27 C 1.46844 * 111.00160 * 54.79446 * 20 2 1 28 28 H 1.08996 * 109.47113 * 299.99762 * 1 2 3 29 29 H 1.08995 * 109.47026 * 59.99418 * 1 2 3 30 30 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47211 * 304.52530 * 4 2 1 32 32 H 1.09009 * 109.46804 * 64.52591 * 4 2 1 33 33 H 0.97006 * 119.99995 * 343.93034 * 5 4 2 34 34 H 1.08998 * 109.46597 * 90.00767 * 10 9 6 35 35 H 1.09000 * 109.46643 * 210.00327 * 10 9 6 36 36 H 1.08998 * 109.47414 * 330.00508 * 10 9 6 37 37 H 1.08997 * 109.47105 * 214.75080 * 11 9 6 38 38 H 1.09004 * 109.46939 * 334.74834 * 11 9 6 39 39 H 0.97003 * 120.00189 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.46762 * 305.85709 * 21 20 2 41 41 H 1.09006 * 109.46341 * 65.82912 * 21 20 2 42 42 H 1.08994 * 109.50325 * 60.76239 * 22 21 20 43 43 H 1.09002 * 109.50741 * 180.88282 * 22 21 20 44 44 H 1.09007 * 109.52061 * 177.55511 * 23 22 21 45 45 H 1.09000 * 109.52544 * 297.67818 * 23 22 21 46 46 H 1.08998 * 109.46983 * 59.99847 * 26 24 23 47 47 H 1.08998 * 109.47166 * 180.02562 * 26 24 23 48 48 H 1.09002 * 109.47001 * 299.99871 * 26 24 23 49 49 H 1.08999 * 109.46276 * 294.17401 * 27 20 2 50 50 H 1.09000 * 109.46229 * 54.14343 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5009 -0.8162 -1.1962 6 16 4.2985 -1.8754 -2.1884 7 8 5.6843 -1.7082 -1.9226 8 8 3.6284 -3.1224 -2.0656 9 7 4.0561 -1.3656 -3.7453 10 6 2.8586 -1.7876 -4.4762 11 6 5.0393 -0.4928 -4.3917 12 6 6.0046 -1.3292 -5.1915 13 1 5.8493 -2.3942 -5.2826 14 6 7.0858 -0.7351 -5.8070 15 7 7.9279 -1.4649 -6.5053 16 14 7.3545 1.1068 -5.6489 17 1 8.1962 1.3837 -4.4572 18 1 8.0378 1.6135 -6.8661 19 1 6.0433 1.7872 -5.4977 20 7 2.0197 -0.6926 1.1993 21 6 1.7408 0.0904 2.4099 22 6 2.3901 -0.5877 3.6185 23 6 1.8297 -2.0052 3.7644 24 6 2.0906 -2.7843 2.4723 25 1 3.1650 -2.8679 2.3084 26 6 1.4810 -4.1828 2.5871 27 6 1.4500 -2.0425 1.2970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6120 -1.7227 -1.2909 32 1 1.7444 -0.1625 -2.1375 33 1 4.0011 -0.2588 -0.5797 34 1 2.0581 -1.0670 -4.3089 35 1 3.0830 -1.8406 -5.5415 36 1 2.5437 -2.7692 -4.1219 37 1 4.5263 0.2037 -5.0548 38 1 5.5855 0.0650 -3.6311 39 1 8.6888 -1.0469 -6.9380 40 1 2.1481 1.0948 2.2947 41 1 0.6632 0.1509 2.5630 42 1 3.4691 -0.6362 3.4723 43 1 2.1698 -0.0147 4.5192 44 1 2.3212 -2.5072 4.5979 45 1 0.7569 -1.9554 3.9506 46 1 0.4065 -4.0985 2.7495 47 1 1.6674 -4.7371 1.6672 48 1 1.9352 -4.7094 3.4265 49 1 0.3739 -1.9719 1.4553 50 1 1.6462 -2.5872 0.3734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330497852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:43 Heat of formation + Delta-G solvation = -108.230040 kcal Electronic energy + Delta-G solvation = -28896.464839 eV Core-core repulsion = 25083.906423 eV Total energy + Delta-G solvation = -3812.558416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63201 -38.27747 -37.32510 -37.15864 -36.81283 -34.69753 -34.48759 -32.94182 -30.72055 -30.26294 -27.58421 -26.88952 -26.61821 -25.23057 -23.82041 -22.73144 -21.54593 -20.29871 -20.14794 -19.15018 -18.63344 -18.14399 -17.54659 -17.08372 -16.63255 -16.07978 -15.78672 -15.58323 -15.37957 -15.22016 -14.84879 -14.76168 -14.52335 -14.48594 -14.07384 -13.92315 -13.79980 -13.44637 -13.40406 -13.33857 -13.12745 -13.08205 -12.96128 -12.94528 -12.68734 -12.58200 -12.37230 -12.33781 -12.23027 -12.03527 -11.91601 -11.70106 -11.60727 -11.48512 -11.20664 -11.02949 -10.77701 -10.35487 -9.74789 -9.11742 -8.28987 -6.35028 -0.29828 1.37088 1.42399 1.50229 2.11643 2.36492 2.67031 2.98601 3.05615 3.47377 3.74870 3.84048 3.92232 4.03636 4.05983 4.17905 4.28240 4.37905 4.44245 4.48570 4.55877 4.62186 4.67184 4.69314 4.70526 4.75723 4.77058 4.83807 4.89226 4.89763 4.97162 5.02339 5.05725 5.07424 5.11341 5.17554 5.27634 5.30281 5.31974 5.38942 5.42344 5.49390 5.55902 5.75530 6.18497 6.26740 6.28152 6.35278 6.68030 7.28478 8.88686 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003282 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.437903 B = 8529.142703 C = 8711.194352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 H 0.102 0.898 4 C 0.119 3.881 5 N -1.102 6.102 6 S 2.797 3.203 7 O -1.017 7.017 8 O -1.013 7.013 9 N -1.001 6.001 10 C 0.086 3.914 11 C 0.236 3.764 12 C -0.548 4.548 13 H 0.027 0.973 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.226 1.226 20 N -0.544 5.544 21 C 0.056 3.944 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.095 4.095 25 H 0.053 0.947 26 C -0.145 4.145 27 C 0.057 3.943 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.424 0.576 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 7.101 19.740 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 H 0.120 0.880 4 C -0.007 4.007 5 N -0.866 5.866 6 S 2.805 3.195 7 O -1.000 7.000 8 O -0.996 6.996 9 N -0.842 5.842 10 C -0.059 4.059 11 C 0.111 3.889 12 C -0.587 4.587 13 H 0.045 0.955 14 C -0.192 4.192 15 N -0.589 5.589 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.148 1.148 20 N -0.268 5.268 21 C -0.071 4.071 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.114 4.114 25 H 0.072 0.928 26 C -0.203 4.203 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.260 0.740 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.203 6.170 19.718 28.896 hybrid contribution 0.155 0.507 -0.277 0.598 sum -20.048 6.678 19.441 28.713 Atomic orbital electron populations 1.22363 0.95101 1.02762 1.03676 1.21925 0.94179 0.98439 0.88619 0.88034 1.21609 0.78270 1.01509 0.99310 1.55434 1.15912 1.60648 1.54597 1.01187 0.71834 0.73657 0.72821 1.93558 1.34296 1.86895 1.85295 1.93487 1.76866 1.42595 1.86681 1.57347 1.31533 1.65141 1.30148 1.21646 0.85583 1.00259 0.98461 1.19188 0.86785 0.89703 0.93219 1.21760 1.09990 0.95222 1.31703 0.95492 1.25978 0.94824 1.04362 0.94067 1.70076 1.15331 1.38548 1.34980 0.85762 0.80764 0.78682 0.78109 1.19662 1.20326 1.14849 1.61996 1.59637 1.02555 1.02619 1.22125 0.98783 0.97040 0.89166 1.21598 1.00355 0.95968 0.97627 1.21597 1.01174 0.95492 0.96425 1.21185 0.99795 0.95178 0.95267 0.92816 1.21779 1.01253 0.95611 1.01635 1.22160 0.96899 0.89604 0.98429 0.91293 0.90338 0.92336 0.91439 0.89429 0.74037 0.89555 0.91394 0.91290 0.92421 0.94789 0.92337 0.90143 0.93851 0.92546 0.90053 0.91645 0.91437 0.91647 0.93657 0.91943 0.93359 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.46 71.98 0.61 -1.42 16 2 C 0.08 1.20 2.44 44.92 0.11 1.30 16 3 H 0.10 1.35 8.00 -2.39 -0.02 1.33 16 4 C 0.12 2.40 5.42 86.38 0.47 2.86 16 5 N -1.10 -29.84 5.80 -187.49 -1.09 -30.93 16 6 S 2.80 110.41 6.11 -56.49 -0.35 110.07 16 7 O -1.02 -50.30 16.98 -128.00 -2.17 -52.47 16 8 O -1.01 -42.83 16.27 -128.00 -2.08 -44.91 16 9 N -1.00 -39.77 3.23 -543.23 -1.75 -41.52 16 10 C 0.09 2.70 10.70 127.77 1.37 4.07 16 11 C 0.24 10.94 4.16 85.63 0.36 11.29 16 12 C -0.55 -32.45 9.94 25.60 0.25 -32.19 16 13 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 14 C 0.01 0.32 5.47 84.65 0.46 0.78 16 15 N -0.95 -61.06 13.96 21.44 0.30 -60.76 16 16 Si 0.95 43.39 27.37 68.60 1.88 45.27 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.23 -8.89 6.69 99.48 0.67 -8.22 16 20 N -0.54 -9.66 4.30 -871.12 -3.75 -13.41 16 21 C 0.06 0.78 5.12 86.33 0.44 1.22 16 22 C -0.12 -1.66 6.09 30.65 0.19 -1.47 16 23 C -0.11 -1.59 5.29 30.68 0.16 -1.43 16 24 C -0.10 -1.82 2.88 -10.74 -0.03 -1.85 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 C -0.14 -2.49 9.20 71.98 0.66 -1.83 16 27 C 0.06 1.09 3.84 86.33 0.33 1.42 16 28 H 0.07 0.68 6.79 -2.39 -0.02 0.67 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.73 6.47 -2.39 -0.02 0.72 16 31 H 0.07 1.48 6.21 -2.39 -0.01 1.46 16 32 H 0.09 1.41 8.04 -2.38 -0.02 1.39 16 33 H 0.42 10.57 8.61 -96.74 -0.83 9.74 16 34 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 35 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 36 H 0.07 2.14 7.06 -2.39 -0.02 2.13 16 37 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 38 H 0.03 1.57 6.65 -2.38 -0.02 1.55 16 39 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 41 H 0.04 0.52 6.85 -2.38 -0.02 0.50 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 0.79 6.58 -2.39 -0.02 0.77 16 50 H 0.06 1.42 6.28 -2.39 -0.01 1.40 16 Total: -1.00 -79.52 392.76 -3.59 -83.11 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.04 Total: 22.79 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.38 Total: -17.24 kcal Atomic # 7 Polarization: -140.33 SS G_CDS: -6.29 Total: -146.62 kcal Atomic # 8 Polarization: -93.13 SS G_CDS: -4.26 Total: -97.38 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Atomic # 16 Polarization: 110.41 SS G_CDS: -0.35 Total: 110.07 kcal Total: -79.52 -3.59 -83.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.121 kcal (2) G-P(sol) polarization free energy of solvation -79.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds