Wall clock time and date at job start Tue Mar 31 2020 17:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.53001 * 109.47226 * 239.99965 * 2 1 3 5 5 N 1.46500 * 109.46985 * 184.99945 * 4 2 1 6 6 S 1.65596 * 120.00079 * 164.99807 * 5 4 2 7 7 O 1.42098 * 106.40345 * 311.46071 * 6 5 4 8 8 O 1.42094 * 106.40745 * 178.53902 * 6 5 4 9 9 N 1.65606 * 107.21969 * 64.99962 * 6 5 4 10 10 C 1.46499 * 120.00003 * 89.99706 * 9 6 5 11 11 C 1.46502 * 119.99935 * 270.00204 * 9 6 5 12 12 C 1.50695 * 109.47115 * 264.99495 * 11 9 6 13 13 H 1.07995 * 120.00143 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99827 * 179.97438 * 12 11 9 15 15 N 1.31512 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47037 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47150 * 120.00254 * 16 14 12 19 19 H 1.48499 * 109.47304 * 240.00318 * 16 14 12 20 20 N 1.46902 * 109.47354 * 119.99742 * 2 1 3 21 21 C 1.46850 * 110.99640 * 59.21175 * 20 2 1 22 22 C 1.53035 * 109.51957 * 174.16454 * 21 20 2 23 23 C 1.53117 * 109.28125 * 59.17823 * 22 21 20 24 24 C 1.53118 * 109.16139 * 302.34679 * 23 22 21 25 25 H 1.09007 * 109.53541 * 297.69329 * 24 23 22 26 26 C 1.53003 * 109.50481 * 177.59618 * 24 23 22 27 27 C 1.46850 * 110.99819 * 295.00519 * 20 2 1 28 28 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47383 * 299.99969 * 1 2 3 30 30 H 1.09005 * 109.47197 * 60.00301 * 1 2 3 31 31 H 1.08995 * 109.47057 * 64.99809 * 4 2 1 32 32 H 1.08997 * 109.46767 * 304.99551 * 4 2 1 33 33 H 0.97004 * 120.00128 * 344.99987 * 5 4 2 34 34 H 1.09002 * 109.47391 * 270.00374 * 10 9 6 35 35 H 1.09001 * 109.46813 * 150.00430 * 10 9 6 36 36 H 1.09004 * 109.47041 * 30.00557 * 10 9 6 37 37 H 1.08999 * 109.47026 * 24.99991 * 11 9 6 38 38 H 1.09005 * 109.46953 * 144.99617 * 11 9 6 39 39 H 0.97008 * 119.99992 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46295 * 294.17265 * 21 20 2 41 41 H 1.08995 * 109.46194 * 54.14531 * 21 20 2 42 42 H 1.08995 * 109.50672 * 299.23716 * 22 21 20 43 43 H 1.09002 * 109.53675 * 179.13557 * 22 21 20 44 44 H 1.09003 * 109.52508 * 182.43616 * 23 22 21 45 45 H 1.09005 * 109.57632 * 62.28446 * 23 22 21 46 46 H 1.09003 * 109.46871 * 300.19631 * 26 24 23 47 47 H 1.09001 * 109.47240 * 60.19379 * 26 24 23 48 48 H 1.08998 * 109.47176 * 180.19444 * 26 24 23 49 49 H 1.08999 * 109.46004 * 305.84801 * 27 20 2 50 50 H 1.09002 * 109.46553 * 65.82860 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 16 4.2965 -1.8689 -2.2010 7 8 3.6200 -3.1149 -2.1062 8 8 5.6820 -1.7139 -1.9266 9 7 4.0628 -1.3265 -3.7482 10 6 5.0061 -0.3754 -4.3413 11 6 2.9127 -1.7978 -4.5237 12 6 3.3288 -2.9660 -5.3798 13 1 4.3479 -3.3221 -5.3490 14 6 2.4082 -3.5809 -6.2017 15 7 1.1671 -3.1475 -6.2388 16 14 2.9238 -5.0295 -7.2624 17 1 4.3628 -5.3196 -7.0384 18 1 2.1165 -6.2216 -6.8986 19 1 2.7019 -4.6992 -8.6931 20 7 2.0197 -0.6924 1.1995 21 6 1.5335 -2.0774 1.2429 22 6 2.1777 -2.8088 2.4227 23 6 1.8222 -2.0823 3.7229 24 6 2.2964 -0.6292 3.6325 25 1 3.3810 -0.6057 3.5257 26 6 1.8920 0.1201 4.9037 27 6 1.6488 0.0390 2.4176 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2950 33 1 4.0003 -0.2853 -0.5597 34 1 4.6776 0.6422 -4.1294 35 1 5.0453 -0.5273 -5.4199 36 1 5.9971 -0.5333 -3.9158 37 1 2.1194 -2.1095 -3.8442 38 1 2.5492 -0.9915 -5.1610 39 1 0.5195 -3.5799 -6.8173 40 1 0.4501 -2.0784 1.3628 41 1 1.7964 -2.5839 0.3142 42 1 3.2602 -2.8202 2.2966 43 1 1.8053 -3.8324 2.4644 44 1 2.3144 -2.5747 4.5616 45 1 0.7424 -2.1046 3.8703 46 1 0.8075 0.0951 5.0107 47 1 2.3535 -0.3562 5.7687 48 1 2.2268 1.1553 4.8373 49 1 1.9955 1.0696 2.3422 50 1 0.5648 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330497853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:48 Heat of formation + Delta-G solvation = -86.112903 kcal Electronic energy + Delta-G solvation = -28903.841716 eV Core-core repulsion = 25092.242370 eV Total energy + Delta-G solvation = -3811.599345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79496 -36.61398 -36.25764 -35.42410 -35.03184 -33.47433 -32.40624 -32.15623 -29.99020 -27.73727 -26.81521 -25.74422 -25.01626 -24.10425 -22.44323 -22.22566 -20.37941 -19.36281 -18.68084 -17.19496 -16.63715 -16.48473 -16.16299 -15.79508 -15.38052 -14.90309 -14.63625 -14.44384 -14.37967 -14.04122 -13.63714 -13.38961 -13.27895 -12.97798 -12.84459 -12.78862 -12.42081 -12.17487 -12.13652 -12.04405 -11.95302 -11.77760 -11.54829 -11.41257 -11.20734 -11.09756 -11.08285 -11.04649 -10.75501 -10.71042 -10.64735 -10.49282 -10.33768 -10.25546 -10.00109 -9.71264 -9.07595 -8.43375 -8.30459 -8.01082 -6.05514 -4.08752 1.35715 3.31873 3.39507 3.45356 3.63526 3.80203 4.27856 4.46494 4.55023 4.65289 4.69348 4.82671 4.99892 5.08387 5.11059 5.23427 5.26384 5.29613 5.31902 5.38322 5.46267 5.51182 5.56287 5.57129 5.63302 5.66419 5.71508 5.76976 5.86657 5.90894 5.94551 5.97149 6.03646 6.06891 6.09167 6.20061 6.25057 6.33619 6.41592 6.62171 7.05836 7.08694 7.20039 7.38741 7.47524 7.68862 7.93000 8.22715 8.94074 9.56456 11.03056 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003313 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.874830 B = 8449.156508 C = 8757.881785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.088 0.912 4 C 0.129 3.871 5 N -1.122 6.122 6 S 2.784 3.216 7 O -0.967 6.967 8 O -1.002 7.002 9 N -1.000 6.000 10 C 0.097 3.903 11 C 0.257 3.743 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 N -0.527 5.527 21 C 0.045 3.955 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.091 4.091 25 H 0.078 0.922 26 C -0.145 4.145 27 C 0.060 3.940 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.036 0.964 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 9.694 18.072 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 H 0.106 0.894 4 C 0.001 3.999 5 N -0.881 5.881 6 S 2.791 3.209 7 O -0.950 6.950 8 O -0.986 6.986 9 N -0.842 5.842 10 C -0.049 4.049 11 C 0.134 3.866 12 C -0.566 4.566 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.210 1.210 20 N -0.251 5.251 21 C -0.083 4.083 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.109 4.109 25 H 0.097 0.903 26 C -0.203 4.203 27 C -0.068 4.068 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.834 8.752 18.068 20.094 hybrid contribution -0.833 -0.177 -0.515 0.995 sum -1.666 8.576 17.554 19.607 Atomic orbital electron populations 1.22429 0.96777 1.02931 1.02552 1.21904 0.93080 0.98356 0.89975 0.89392 1.21290 0.80213 1.01522 0.96838 1.55904 1.14875 1.62964 1.54367 1.01838 0.72593 0.73819 0.72640 1.93607 1.75509 1.39979 1.85901 1.93521 1.32556 1.87197 1.85298 1.57634 1.37536 1.58721 1.30323 1.21310 0.91986 0.90841 1.00807 1.19046 0.81730 0.94663 0.91118 1.21541 0.96821 1.14747 1.23450 0.92162 1.24923 0.94788 0.97315 0.97013 1.69924 1.02772 1.41548 1.39344 0.86471 0.78954 0.82436 0.79773 1.19632 1.20823 1.20998 1.62067 1.59553 1.02172 1.01264 1.22231 0.96976 0.88959 1.00096 1.21582 1.01866 0.98404 0.93744 1.21643 1.00596 0.95222 0.97771 1.21176 1.01196 0.94808 0.93769 0.90317 1.21792 1.01189 1.00122 0.97207 1.22134 0.97711 0.97418 0.89529 0.91784 0.92312 0.91387 0.91238 0.90346 0.75402 0.94357 0.90568 0.91693 0.94527 0.94868 0.92806 0.94627 0.89420 0.91043 0.91512 0.92073 0.92483 0.92951 0.92592 0.92688 0.91054 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 8.50 37.16 0.32 -1.53 16 2 C 0.08 0.83 2.48 -67.71 -0.17 0.67 16 3 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 4 C 0.13 1.79 5.26 -4.04 -0.02 1.77 16 5 N -1.12 -16.84 5.80 -10.61 -0.06 -16.90 16 6 S 2.78 55.75 6.10 -107.50 -0.66 55.09 16 7 O -0.97 -23.09 16.58 -57.18 -0.95 -24.04 16 8 O -1.00 -21.41 16.74 -57.18 -0.96 -22.37 16 9 N -1.00 -20.82 3.23 -123.05 -0.40 -21.22 16 10 C 0.10 1.70 10.68 59.85 0.64 2.34 16 11 C 0.26 6.35 5.08 -5.19 -0.03 6.33 16 12 C -0.53 -14.80 9.38 -34.44 -0.32 -15.12 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.53 -5.84 4.30 -226.69 -0.98 -6.81 16 21 C 0.04 0.54 4.63 -3.83 -0.02 0.52 16 22 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 23 C -0.11 -1.04 5.29 -26.61 -0.14 -1.18 16 24 C -0.09 -0.79 2.88 -90.54 -0.26 -1.05 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.15 -1.02 9.20 37.16 0.34 -0.68 16 27 C 0.06 0.55 4.31 -3.84 -0.02 0.54 16 28 H 0.06 0.68 6.52 -51.93 -0.34 0.34 16 29 H 0.06 0.51 6.65 -51.93 -0.35 0.17 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 33 H 0.41 5.41 8.58 -34.47 -0.30 5.11 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 36 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 37 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 38 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.04 0.41 6.62 -51.93 -0.34 0.06 16 41 H 0.09 1.28 6.14 -51.93 -0.32 0.96 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 50 H 0.03 0.31 6.73 -51.93 -0.35 -0.04 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -32.79 396.20 -11.19 -43.99 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.95 Total: 1.81 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 0.06 Total: -7.22 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.70 Total: -70.12 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.91 Total: -46.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.66 Total: 55.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.79 -11.19 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.127 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds