Wall clock time and date at job start Tue Mar 31 2020 17:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.53001 * 109.47226 * 239.99965 * 2 1 3 5 5 N 1.46500 * 109.46985 * 184.99945 * 4 2 1 6 6 S 1.65596 * 120.00079 * 164.99807 * 5 4 2 7 7 O 1.42098 * 106.40345 * 311.46071 * 6 5 4 8 8 O 1.42094 * 106.40745 * 178.53902 * 6 5 4 9 9 N 1.65606 * 107.21969 * 64.99962 * 6 5 4 10 10 C 1.46499 * 120.00003 * 89.99706 * 9 6 5 11 11 C 1.46502 * 119.99935 * 270.00204 * 9 6 5 12 12 C 1.50695 * 109.47115 * 264.99495 * 11 9 6 13 13 H 1.07995 * 120.00143 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99827 * 179.97438 * 12 11 9 15 15 N 1.31512 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47037 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47150 * 120.00254 * 16 14 12 19 19 H 1.48499 * 109.47304 * 240.00318 * 16 14 12 20 20 N 1.46902 * 109.47354 * 119.99742 * 2 1 3 21 21 C 1.46850 * 110.99640 * 59.21175 * 20 2 1 22 22 C 1.53035 * 109.51957 * 174.16454 * 21 20 2 23 23 C 1.53117 * 109.28125 * 59.17823 * 22 21 20 24 24 C 1.53118 * 109.16139 * 302.34679 * 23 22 21 25 25 H 1.09007 * 109.53541 * 297.69329 * 24 23 22 26 26 C 1.53003 * 109.50481 * 177.59618 * 24 23 22 27 27 C 1.46850 * 110.99819 * 295.00519 * 20 2 1 28 28 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47383 * 299.99969 * 1 2 3 30 30 H 1.09005 * 109.47197 * 60.00301 * 1 2 3 31 31 H 1.08995 * 109.47057 * 64.99809 * 4 2 1 32 32 H 1.08997 * 109.46767 * 304.99551 * 4 2 1 33 33 H 0.97004 * 120.00128 * 344.99987 * 5 4 2 34 34 H 1.09002 * 109.47391 * 270.00374 * 10 9 6 35 35 H 1.09001 * 109.46813 * 150.00430 * 10 9 6 36 36 H 1.09004 * 109.47041 * 30.00557 * 10 9 6 37 37 H 1.08999 * 109.47026 * 24.99991 * 11 9 6 38 38 H 1.09005 * 109.46953 * 144.99617 * 11 9 6 39 39 H 0.97008 * 119.99992 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46295 * 294.17265 * 21 20 2 41 41 H 1.08995 * 109.46194 * 54.14531 * 21 20 2 42 42 H 1.08995 * 109.50672 * 299.23716 * 22 21 20 43 43 H 1.09002 * 109.53675 * 179.13557 * 22 21 20 44 44 H 1.09003 * 109.52508 * 182.43616 * 23 22 21 45 45 H 1.09005 * 109.57632 * 62.28446 * 23 22 21 46 46 H 1.09003 * 109.46871 * 300.19631 * 26 24 23 47 47 H 1.09001 * 109.47240 * 60.19379 * 26 24 23 48 48 H 1.08998 * 109.47176 * 180.19444 * 26 24 23 49 49 H 1.08999 * 109.46004 * 305.84801 * 27 20 2 50 50 H 1.09002 * 109.46553 * 65.82860 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 16 4.2965 -1.8689 -2.2010 7 8 3.6200 -3.1149 -2.1062 8 8 5.6820 -1.7139 -1.9266 9 7 4.0628 -1.3265 -3.7482 10 6 5.0061 -0.3754 -4.3413 11 6 2.9127 -1.7978 -4.5237 12 6 3.3288 -2.9660 -5.3798 13 1 4.3479 -3.3221 -5.3490 14 6 2.4082 -3.5809 -6.2017 15 7 1.1671 -3.1475 -6.2388 16 14 2.9238 -5.0295 -7.2624 17 1 4.3628 -5.3196 -7.0384 18 1 2.1165 -6.2216 -6.8986 19 1 2.7019 -4.6992 -8.6931 20 7 2.0197 -0.6924 1.1995 21 6 1.5335 -2.0774 1.2429 22 6 2.1777 -2.8088 2.4227 23 6 1.8222 -2.0823 3.7229 24 6 2.2964 -0.6292 3.6325 25 1 3.3810 -0.6057 3.5257 26 6 1.8920 0.1201 4.9037 27 6 1.6488 0.0390 2.4176 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2950 33 1 4.0003 -0.2853 -0.5597 34 1 4.6776 0.6422 -4.1294 35 1 5.0453 -0.5273 -5.4199 36 1 5.9971 -0.5333 -3.9158 37 1 2.1194 -2.1095 -3.8442 38 1 2.5492 -0.9915 -5.1610 39 1 0.5195 -3.5799 -6.8173 40 1 0.4501 -2.0784 1.3628 41 1 1.7964 -2.5839 0.3142 42 1 3.2602 -2.8202 2.2966 43 1 1.8053 -3.8324 2.4644 44 1 2.3144 -2.5747 4.5616 45 1 0.7424 -2.1046 3.8703 46 1 0.8075 0.0951 5.0107 47 1 2.3535 -0.3562 5.7687 48 1 2.2268 1.1553 4.8373 49 1 1.9955 1.0696 2.3422 50 1 0.5648 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330497853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:47 Heat of formation + Delta-G solvation = -110.086891 kcal Electronic energy + Delta-G solvation = -28904.881306 eV Core-core repulsion = 25092.242370 eV Total energy + Delta-G solvation = -3812.638935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.65502 -38.25481 -37.31912 -37.15263 -36.78790 -34.57686 -34.47539 -32.96771 -30.87223 -29.64552 -27.54830 -26.77115 -26.73655 -25.00115 -24.16773 -23.26427 -21.23735 -20.29481 -20.14546 -18.95336 -18.33452 -18.11639 -17.54050 -17.09871 -16.62301 -16.28984 -15.89745 -15.51580 -15.22061 -15.10305 -15.01462 -14.86634 -14.52392 -14.10838 -14.00573 -13.89548 -13.77572 -13.60040 -13.28646 -13.24503 -13.09542 -13.02338 -12.93156 -12.90008 -12.64518 -12.59911 -12.45394 -12.40516 -12.38597 -12.01119 -11.94255 -11.72291 -11.63372 -11.46092 -11.13117 -11.08928 -10.59932 -10.37044 -9.76553 -9.16527 -8.20218 -6.31209 -0.26045 1.37686 1.40403 1.51907 2.13263 2.40681 2.67027 2.95740 3.10834 3.48964 3.73808 3.82790 3.94706 4.01572 4.09594 4.18879 4.25332 4.34228 4.41767 4.50995 4.53678 4.61361 4.68907 4.69979 4.74724 4.80621 4.83672 4.85137 4.85968 4.94903 5.04186 5.06746 5.08715 5.09834 5.16146 5.20172 5.24058 5.31824 5.35646 5.42080 5.49064 5.57278 5.70677 5.90442 6.12311 6.15145 6.26045 6.33851 6.76784 7.37364 8.87237 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003313 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.874830 B = 8449.156508 C = 8757.881785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 H 0.110 0.890 4 C 0.124 3.876 5 N -1.100 6.100 6 S 2.798 3.202 7 O -1.011 7.011 8 O -1.015 7.015 9 N -1.005 6.005 10 C 0.090 3.910 11 C 0.273 3.727 12 C -0.549 4.549 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.269 1.269 20 N -0.535 5.535 21 C 0.047 3.953 22 C -0.120 4.120 23 C -0.109 4.109 24 C -0.090 4.090 25 H 0.068 0.932 26 C -0.139 4.139 27 C 0.060 3.940 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.425 0.575 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 11.226 19.106 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.128 0.872 4 C -0.002 4.002 5 N -0.863 5.863 6 S 2.806 3.194 7 O -0.994 6.994 8 O -0.999 6.999 9 N -0.847 5.847 10 C -0.055 4.055 11 C 0.149 3.851 12 C -0.588 4.588 13 H 0.066 0.934 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.194 1.194 20 N -0.260 5.260 21 C -0.081 4.081 22 C -0.158 4.158 23 C -0.147 4.147 24 C -0.108 4.108 25 H 0.086 0.914 26 C -0.197 4.197 27 C -0.067 4.067 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.975 10.308 19.108 21.733 hybrid contribution -0.771 -0.621 -0.795 1.269 sum -1.746 9.687 18.313 20.790 Atomic orbital electron populations 1.22385 0.95745 1.02416 1.03659 1.21885 0.93779 0.98636 0.88362 0.87240 1.21432 0.78974 1.00789 0.99054 1.55370 1.15444 1.62156 1.53361 1.01161 0.72046 0.73506 0.72713 1.93552 1.76282 1.43053 1.86514 1.93490 1.33561 1.87407 1.85482 1.57524 1.37133 1.59478 1.30591 1.21541 0.91748 0.91874 1.00379 1.18625 0.82471 0.93544 0.90479 1.21860 0.96445 1.16125 1.24403 0.93362 1.25691 0.94889 0.99762 0.98212 1.69998 1.03494 1.42630 1.39996 0.85582 0.78437 0.79328 0.78822 1.19661 1.20499 1.19378 1.62062 1.59859 1.01806 1.02224 1.22124 0.97393 0.89678 0.98912 1.21587 1.00747 0.98768 0.94654 1.21610 1.01029 0.95439 0.96625 1.21169 1.00494 0.94642 0.94545 0.91382 1.21737 1.01511 1.00260 0.96215 1.22212 0.98165 0.97752 0.88562 0.93132 0.90531 0.90907 0.90797 0.92824 0.73830 0.90807 0.91165 0.91006 0.96232 0.95300 0.92377 0.94050 0.92713 0.92573 0.91530 0.91262 0.91885 0.92477 0.92170 0.91954 0.89737 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.50 71.98 0.61 -2.70 16 2 C 0.08 1.69 2.48 44.91 0.11 1.80 16 3 H 0.11 1.81 8.08 -2.39 -0.02 1.79 16 4 C 0.12 3.46 5.26 86.38 0.45 3.92 16 5 N -1.10 -32.72 5.80 -187.49 -1.09 -33.81 16 6 S 2.80 113.61 6.10 -56.49 -0.34 113.26 16 7 O -1.01 -50.21 16.58 -128.00 -2.12 -52.33 16 8 O -1.02 -43.26 16.74 -128.00 -2.14 -45.40 16 9 N -1.01 -42.08 3.23 -543.22 -1.75 -43.83 16 10 C 0.09 3.06 10.68 127.77 1.36 4.42 16 11 C 0.27 13.76 5.08 85.63 0.43 14.20 16 12 C -0.55 -31.42 9.38 25.60 0.24 -31.18 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 14 C 0.01 0.80 5.46 84.65 0.46 1.26 16 15 N -0.92 -53.69 13.29 21.45 0.28 -53.41 16 16 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 N -0.54 -11.28 4.30 -871.12 -3.75 -15.03 16 21 C 0.05 1.14 4.63 86.32 0.40 1.54 16 22 C -0.12 -2.65 6.09 30.65 0.19 -2.46 16 23 C -0.11 -1.84 5.29 30.67 0.16 -1.68 16 24 C -0.09 -1.39 2.88 -10.74 -0.03 -1.42 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 C -0.14 -1.59 9.20 71.98 0.66 -0.93 16 27 C 0.06 0.97 4.31 86.32 0.37 1.34 16 28 H 0.05 1.06 6.52 -2.39 -0.02 1.04 16 29 H 0.08 1.13 6.65 -2.39 -0.02 1.12 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.79 6.17 -2.39 -0.01 1.77 16 33 H 0.43 10.63 8.58 -96.74 -0.83 9.80 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.07 2.33 7.02 -2.38 -0.02 2.32 16 37 H 0.02 1.05 7.61 -2.39 -0.02 1.04 16 38 H 0.03 1.47 8.11 -2.38 -0.02 1.45 16 39 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 40 H 0.04 0.94 6.62 -2.39 -0.02 0.93 16 41 H 0.05 1.70 6.14 -2.39 -0.01 1.68 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 50 H 0.04 0.62 6.73 -2.39 -0.02 0.60 16 Total: -1.00 -70.86 396.20 -3.37 -74.23 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.08 Total: 21.14 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.43 Total: -11.88 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -6.30 Total: -146.08 kcal Atomic # 8 Polarization: -93.47 SS G_CDS: -4.26 Total: -97.74 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 113.61 SS G_CDS: -0.34 Total: 113.26 kcal Total: -70.86 -3.37 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.856 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds