Wall clock time and date at job start Tue Mar 31 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00161 * 2 1 4 4 C 1.50706 * 109.47088 * 274.99705 * 3 2 1 5 5 H 1.07999 * 119.99744 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99862 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99697 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47391 * 60.00021 * 8 6 4 10 10 H 1.48503 * 109.47014 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47396 * 299.99893 * 8 6 4 12 12 S 1.65602 * 119.99884 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40225 * 156.46402 * 12 2 1 14 14 O 1.42099 * 106.40371 * 23.54182 * 12 2 1 15 15 N 1.65599 * 107.21963 * 270.00188 * 12 2 1 16 16 C 1.46498 * 120.00067 * 270.00204 * 15 12 2 17 17 C 1.46500 * 120.00080 * 89.99905 * 15 12 2 18 18 C 1.52994 * 109.47158 * 265.00256 * 17 15 12 19 19 C 1.53001 * 109.47360 * 174.95574 * 18 17 15 20 20 H 1.08997 * 109.45055 * 304.01767 * 19 18 17 21 21 C 1.53036 * 109.46205 * 63.98778 * 19 18 17 22 22 C 1.53112 * 109.28053 * 179.19961 * 21 19 18 23 23 C 1.53122 * 109.15839 * 302.34267 * 22 21 19 24 24 C 1.53038 * 109.27888 * 57.65730 * 23 22 21 25 25 N 1.46845 * 109.52112 * 300.82013 * 24 23 22 26 26 C 1.46898 * 111.00374 * 185.84015 * 25 24 23 27 27 H 1.08995 * 109.47651 * 270.00205 * 1 2 3 28 28 H 1.09002 * 109.46903 * 30.00358 * 1 2 3 29 29 H 1.08997 * 109.47039 * 149.99854 * 1 2 3 30 30 H 1.08995 * 109.47511 * 34.99598 * 3 2 1 31 31 H 1.08998 * 109.47295 * 155.00114 * 3 2 1 32 32 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47462 * 270.00163 * 16 15 12 34 34 H 1.09001 * 109.47448 * 29.99670 * 16 15 12 35 35 H 1.08993 * 109.47508 * 149.99502 * 16 15 12 36 36 H 1.08994 * 109.47222 * 145.00154 * 17 15 12 37 37 H 1.09002 * 109.46799 * 25.00210 * 17 15 12 38 38 H 1.09007 * 109.47552 * 54.95476 * 18 17 15 39 39 H 1.09005 * 109.47411 * 294.95783 * 18 17 15 40 40 H 1.09006 * 109.50059 * 299.14037 * 21 19 18 41 41 H 1.09001 * 109.50448 * 59.25473 * 21 19 18 42 42 H 1.09001 * 109.52468 * 62.24454 * 22 21 19 43 43 H 1.08996 * 109.52520 * 182.44128 * 22 21 19 44 44 H 1.08994 * 109.50521 * 297.71207 * 23 22 21 45 45 H 1.09004 * 109.53266 * 177.61468 * 23 22 21 46 46 H 1.08997 * 109.46485 * 180.80346 * 24 23 22 47 47 H 1.09000 * 109.46700 * 60.83086 * 24 23 22 48 48 H 1.09001 * 109.47235 * 288.16525 * 26 25 24 49 49 H 1.09002 * 109.46990 * 48.15802 * 26 25 24 50 50 H 1.09000 * 109.47757 * 168.15827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6473 -0.6706 8 14 3.1777 3.5670 -3.4208 9 1 1.8311 3.7724 -4.0122 10 1 3.9203 4.8530 -3.4209 11 1 3.9236 2.5652 -4.2242 12 16 2.2929 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5438 14 8 1.4113 -2.4068 -0.5434 15 7 2.5380 -1.8580 1.5826 16 6 3.7451 -1.4112 2.2821 17 6 1.5476 -2.6799 2.2826 18 6 0.5872 -1.7735 3.0551 19 6 -0.5206 -2.6217 3.6831 20 1 -1.0203 -3.1994 2.9056 21 6 0.0891 -3.5744 4.7140 22 6 -1.0252 -4.4070 5.3540 23 6 -2.0517 -3.4668 5.9920 24 6 -2.5994 -2.5172 4.9241 25 7 -1.4951 -1.7433 4.3428 26 6 -1.9990 -0.7239 3.4128 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6502 2.0043 0.5893 31 1 3.1857 1.1177 0.4343 32 1 3.9654 4.4813 -0.8471 33 1 4.5354 -2.1505 2.1518 34 1 4.0705 -0.4555 1.8712 35 1 3.5278 -1.2949 3.3438 36 1 2.0559 -3.3475 2.9783 37 1 0.9868 -3.2694 1.5573 38 1 0.1458 -1.0466 2.3732 39 1 1.1333 -1.2503 3.8400 40 1 0.8009 -4.2367 4.2211 41 1 0.6009 -2.9978 5.4845 42 1 -1.5119 -5.0131 4.5899 43 1 -0.6008 -5.0563 6.1197 44 1 -1.5736 -2.8886 6.7826 45 1 -2.8696 -4.0518 6.4128 46 1 -3.3201 -1.8371 5.3780 47 1 -3.0894 -3.0954 4.1407 48 1 -2.3623 -1.2072 2.5058 49 1 -2.8144 -0.1744 3.8831 50 1 -1.1944 -0.0337 3.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330907149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:46 Heat of formation + Delta-G solvation = -75.639864 kcal Electronic energy + Delta-G solvation = -29101.470141 eV Core-core repulsion = 25290.324940 eV Total energy + Delta-G solvation = -3811.145200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.59980 -36.72259 -36.41131 -35.48628 -35.14667 -33.78890 -32.74972 -32.42772 -28.87420 -27.79084 -26.82358 -25.85896 -25.02839 -23.76001 -22.71626 -22.23055 -20.99350 -19.83709 -18.38070 -17.35964 -16.78688 -16.32964 -16.25558 -15.69301 -15.38033 -15.02761 -14.64606 -14.59972 -14.34947 -14.07940 -13.67317 -13.61823 -13.34618 -13.25728 -13.02810 -12.48175 -12.31513 -12.30433 -12.21840 -12.13485 -11.96915 -11.79228 -11.59710 -11.53737 -11.27013 -11.15205 -11.10452 -11.05966 -10.91212 -10.80575 -10.70523 -10.55171 -10.47862 -10.19425 -10.02625 -9.76504 -8.84639 -8.44789 -8.43225 -8.04693 -6.06227 -4.10226 1.20249 3.33896 3.37414 3.41430 3.44390 3.74214 4.08726 4.44955 4.52920 4.59726 4.67713 4.83373 4.90181 4.98972 5.10760 5.16791 5.23974 5.27901 5.29844 5.38411 5.40436 5.45276 5.51817 5.55772 5.61062 5.63781 5.71538 5.74193 5.75746 5.78406 5.89507 5.91349 5.97831 5.98591 6.04411 6.14466 6.22509 6.28692 6.40608 6.52117 6.79786 6.93353 6.98806 7.22775 7.40682 7.60912 7.91252 8.20718 8.91828 9.54946 11.02279 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003372 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.508608 B = 8302.409490 C = 8962.539759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.778 3.222 13 O -0.961 6.961 14 O -0.997 6.997 15 N -1.014 6.014 16 C 0.096 3.904 17 C 0.118 3.882 18 C -0.144 4.144 19 C 0.088 3.912 20 H 0.043 0.957 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.117 4.117 24 C 0.055 3.945 25 N -0.538 5.538 26 C 0.019 3.981 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.065 0.935 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -13.354 14.424 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.137 3.863 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.787 3.213 13 O -0.945 6.945 14 O -0.981 6.981 15 N -0.852 5.852 16 C -0.049 4.049 17 C -0.008 4.008 18 C -0.184 4.184 19 C -0.021 4.021 20 H 0.061 0.939 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.073 4.073 25 N -0.262 5.262 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.084 0.916 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.041 -13.425 14.098 21.465 hybrid contribution -0.448 0.376 -1.199 1.334 sum -9.489 -13.049 12.899 20.657 Atomic orbital electron populations 1.21399 0.80448 1.03411 0.99957 1.57665 1.14151 1.23388 1.88564 1.19035 0.90868 0.78803 0.97601 1.21461 1.36225 1.06315 0.92937 0.92275 1.24921 0.95082 0.96479 0.97461 1.69905 1.37284 1.15315 1.30970 0.86585 0.78308 0.78008 0.84726 1.20179 1.21148 1.19985 1.02103 0.73482 0.72842 0.72901 1.93625 1.40426 1.84841 1.75573 1.93496 1.67463 1.60440 1.76750 1.58147 1.29017 1.65462 1.32606 1.21420 0.85579 1.00224 0.97703 1.21318 0.89841 0.92821 0.96835 1.22306 0.96424 0.99018 1.00603 1.21607 0.92847 0.93024 0.94609 0.93871 1.21706 0.97659 0.97357 0.98511 1.21593 0.96788 0.97704 0.99922 1.21585 0.98617 0.97130 0.98132 1.22093 0.92719 0.95715 0.96752 1.61917 1.14461 1.15067 1.34790 1.22479 1.00665 0.95349 0.94445 0.94341 0.90348 0.91744 0.94761 0.94592 0.92630 0.92916 0.90533 0.91466 0.90363 0.89529 0.90561 0.90413 0.91215 0.90916 0.92312 0.91843 0.91116 0.91807 0.90875 0.95086 0.95333 0.91600 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.42 59.84 0.62 2.24 16 2 N -1.00 -20.70 3.23 -123.06 -0.40 -21.09 16 3 C 0.26 6.45 5.08 -5.19 -0.03 6.42 16 4 C -0.53 -14.91 9.38 -34.44 -0.32 -15.24 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 S 2.78 56.44 6.02 -107.50 -0.65 55.79 16 13 O -0.96 -23.39 16.18 -57.17 -0.93 -24.31 16 14 O -1.00 -20.92 15.29 -57.17 -0.87 -21.79 16 15 N -1.01 -15.72 3.24 -121.76 -0.39 -16.11 16 16 C 0.10 1.34 10.31 59.85 0.62 1.95 16 17 C 0.12 1.48 5.26 -4.04 -0.02 1.45 16 18 C -0.14 -1.68 4.73 -26.73 -0.13 -1.81 16 19 C 0.09 0.91 1.90 -67.72 -0.13 0.78 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 C -0.11 -0.99 5.09 -26.65 -0.14 -1.13 16 22 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 23 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 24 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 25 N -0.54 -5.54 4.75 -234.93 -1.11 -6.65 16 26 C 0.02 0.19 8.86 60.06 0.53 0.72 16 27 H 0.04 0.55 5.61 -51.93 -0.29 0.26 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 30 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 31 H 0.04 0.95 7.26 -51.93 -0.38 0.57 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.21 7.44 -51.93 -0.39 0.83 16 35 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.08 0.79 6.78 -51.93 -0.35 0.44 16 37 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 38 H 0.08 0.98 3.77 -51.92 -0.20 0.79 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.55 6.69 -51.93 -0.35 0.21 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 47 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 49 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 50 H 0.08 0.86 6.24 -51.93 -0.32 0.53 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -32.95 392.33 -11.01 -43.96 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.86 Total: -2.67 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.57 Total: -4.61 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.17 Total: -69.15 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.80 Total: -46.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 56.44 SS G_CDS: -0.65 Total: 55.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.95 -11.01 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.683 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds