Wall clock time and date at job start Tue Mar 31 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00161 * 2 1 4 4 C 1.50706 * 109.47088 * 274.99705 * 3 2 1 5 5 H 1.07999 * 119.99744 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99862 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99697 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47391 * 60.00021 * 8 6 4 10 10 H 1.48503 * 109.47014 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47396 * 299.99893 * 8 6 4 12 12 S 1.65602 * 119.99884 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40225 * 156.46402 * 12 2 1 14 14 O 1.42099 * 106.40371 * 23.54182 * 12 2 1 15 15 N 1.65599 * 107.21963 * 270.00188 * 12 2 1 16 16 C 1.46498 * 120.00067 * 270.00204 * 15 12 2 17 17 C 1.46500 * 120.00080 * 89.99905 * 15 12 2 18 18 C 1.52994 * 109.47158 * 265.00256 * 17 15 12 19 19 C 1.53001 * 109.47360 * 174.95574 * 18 17 15 20 20 H 1.08997 * 109.45055 * 304.01767 * 19 18 17 21 21 C 1.53036 * 109.46205 * 63.98778 * 19 18 17 22 22 C 1.53112 * 109.28053 * 179.19961 * 21 19 18 23 23 C 1.53122 * 109.15839 * 302.34267 * 22 21 19 24 24 C 1.53038 * 109.27888 * 57.65730 * 23 22 21 25 25 N 1.46845 * 109.52112 * 300.82013 * 24 23 22 26 26 C 1.46898 * 111.00374 * 185.84015 * 25 24 23 27 27 H 1.08995 * 109.47651 * 270.00205 * 1 2 3 28 28 H 1.09002 * 109.46903 * 30.00358 * 1 2 3 29 29 H 1.08997 * 109.47039 * 149.99854 * 1 2 3 30 30 H 1.08995 * 109.47511 * 34.99598 * 3 2 1 31 31 H 1.08998 * 109.47295 * 155.00114 * 3 2 1 32 32 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47462 * 270.00163 * 16 15 12 34 34 H 1.09001 * 109.47448 * 29.99670 * 16 15 12 35 35 H 1.08993 * 109.47508 * 149.99502 * 16 15 12 36 36 H 1.08994 * 109.47222 * 145.00154 * 17 15 12 37 37 H 1.09002 * 109.46799 * 25.00210 * 17 15 12 38 38 H 1.09007 * 109.47552 * 54.95476 * 18 17 15 39 39 H 1.09005 * 109.47411 * 294.95783 * 18 17 15 40 40 H 1.09006 * 109.50059 * 299.14037 * 21 19 18 41 41 H 1.09001 * 109.50448 * 59.25473 * 21 19 18 42 42 H 1.09001 * 109.52468 * 62.24454 * 22 21 19 43 43 H 1.08996 * 109.52520 * 182.44128 * 22 21 19 44 44 H 1.08994 * 109.50521 * 297.71207 * 23 22 21 45 45 H 1.09004 * 109.53266 * 177.61468 * 23 22 21 46 46 H 1.08997 * 109.46485 * 180.80346 * 24 23 22 47 47 H 1.09000 * 109.46700 * 60.83086 * 24 23 22 48 48 H 1.09001 * 109.47235 * 288.16525 * 26 25 24 49 49 H 1.09002 * 109.46990 * 48.15802 * 26 25 24 50 50 H 1.09000 * 109.47757 * 168.15827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6473 -0.6706 8 14 3.1777 3.5670 -3.4208 9 1 1.8311 3.7724 -4.0122 10 1 3.9203 4.8530 -3.4209 11 1 3.9236 2.5652 -4.2242 12 16 2.2929 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5438 14 8 1.4113 -2.4068 -0.5434 15 7 2.5380 -1.8580 1.5826 16 6 3.7451 -1.4112 2.2821 17 6 1.5476 -2.6799 2.2826 18 6 0.5872 -1.7735 3.0551 19 6 -0.5206 -2.6217 3.6831 20 1 -1.0203 -3.1994 2.9056 21 6 0.0891 -3.5744 4.7140 22 6 -1.0252 -4.4070 5.3540 23 6 -2.0517 -3.4668 5.9920 24 6 -2.5994 -2.5172 4.9241 25 7 -1.4951 -1.7433 4.3428 26 6 -1.9990 -0.7239 3.4128 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6502 2.0043 0.5893 31 1 3.1857 1.1177 0.4343 32 1 3.9654 4.4813 -0.8471 33 1 4.5354 -2.1505 2.1518 34 1 4.0705 -0.4555 1.8712 35 1 3.5278 -1.2949 3.3438 36 1 2.0559 -3.3475 2.9783 37 1 0.9868 -3.2694 1.5573 38 1 0.1458 -1.0466 2.3732 39 1 1.1333 -1.2503 3.8400 40 1 0.8009 -4.2367 4.2211 41 1 0.6009 -2.9978 5.4845 42 1 -1.5119 -5.0131 4.5899 43 1 -0.6008 -5.0563 6.1197 44 1 -1.5736 -2.8886 6.7826 45 1 -2.8696 -4.0518 6.4128 46 1 -3.3201 -1.8371 5.3780 47 1 -3.0894 -3.0954 4.1407 48 1 -2.3623 -1.2072 2.5058 49 1 -2.8144 -0.1744 3.8831 50 1 -1.1944 -0.0337 3.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330907149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:45 Heat of formation + Delta-G solvation = -98.928620 kcal Electronic energy + Delta-G solvation = -29102.480017 eV Core-core repulsion = 25290.324940 eV Total energy + Delta-G solvation = -3812.155077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36222 -38.38403 -37.57788 -37.22652 -36.87630 -34.55407 -34.44059 -33.63961 -29.84910 -29.58048 -27.65011 -27.00980 -26.64248 -24.70970 -24.15657 -23.49413 -21.79876 -20.56831 -19.86955 -19.00545 -18.47150 -18.22388 -17.51027 -16.87511 -16.45464 -16.26392 -15.91510 -15.48717 -15.40488 -15.18578 -14.98697 -14.93446 -14.69160 -14.27809 -14.05321 -13.98786 -13.86799 -13.56217 -13.37202 -13.24599 -13.11796 -13.07671 -12.99009 -12.95309 -12.83076 -12.57134 -12.50213 -12.49622 -12.32999 -12.03471 -11.96364 -11.78478 -11.66862 -11.54389 -11.24160 -10.96560 -10.60539 -10.05167 -9.78359 -9.22689 -8.21131 -6.33132 -0.37793 1.38228 1.41773 1.48859 1.98295 2.38756 2.54500 2.96183 3.09544 3.36353 3.69863 3.84963 3.91849 4.03888 4.07960 4.18185 4.29064 4.33469 4.40199 4.44144 4.54844 4.58705 4.61936 4.63743 4.68517 4.71543 4.74140 4.84247 4.88913 4.92041 4.95013 5.00003 5.10303 5.11582 5.14668 5.16755 5.20122 5.30339 5.33113 5.37044 5.43940 5.55249 5.61309 5.70011 5.94195 6.09927 6.16653 6.23989 6.74468 7.35579 8.86135 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003372 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.508608 B = 8302.409490 C = 8962.539759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.002 6.002 3 C 0.276 3.724 4 C -0.553 4.553 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.278 1.278 12 S 2.788 3.212 13 O -1.008 7.008 14 O -1.007 7.007 15 N -1.005 6.005 16 C 0.091 3.909 17 C 0.114 3.886 18 C -0.139 4.139 19 C 0.090 3.910 20 H 0.036 0.964 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.053 3.947 25 N -0.546 5.546 26 C 0.018 3.982 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.017 0.983 32 H 0.268 0.732 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.029 0.971 48 H 0.025 0.975 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -14.391 15.625 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.843 5.843 3 C 0.152 3.848 4 C -0.592 4.592 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.204 1.204 12 S 2.797 3.203 13 O -0.991 6.991 14 O -0.991 6.991 15 N -0.846 5.846 16 C -0.054 4.054 17 C -0.011 4.011 18 C -0.178 4.178 19 C -0.019 4.019 20 H 0.054 0.946 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.075 4.075 25 N -0.271 5.271 26 C -0.130 4.130 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.047 0.953 48 H 0.044 0.956 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.867 -14.473 15.298 23.256 hybrid contribution -0.241 0.633 -1.484 1.631 sum -10.108 -13.840 13.815 22.012 Atomic orbital electron populations 1.21579 0.78482 1.03440 1.01998 1.57554 1.15487 1.22075 1.89205 1.18583 0.90281 0.80165 0.95769 1.21809 1.36491 1.06711 0.94186 0.93207 1.25716 0.94731 0.96695 1.01403 1.69991 1.37698 1.15690 1.32761 0.85674 0.78830 0.77624 0.80001 1.18843 1.19954 1.20368 1.01551 0.72355 0.72483 0.73924 1.93559 1.42620 1.85435 1.77523 1.93472 1.67458 1.60378 1.77816 1.57778 1.30206 1.65443 1.31201 1.21603 0.85255 0.99377 0.99162 1.21591 0.89582 0.92865 0.97040 1.22230 0.96647 0.98741 1.00190 1.21582 0.92419 0.92927 0.94960 0.94564 1.21713 0.98126 0.97196 0.98055 1.21598 0.96462 0.97661 1.00197 1.21581 0.99085 0.96967 0.97560 1.22171 0.92415 0.95944 0.96951 1.61947 1.15138 1.15361 1.34661 1.22464 1.00547 0.95353 0.94611 0.91352 0.90977 0.90997 0.95469 0.96534 0.92302 0.91386 0.93170 0.88004 0.87046 0.90141 0.92088 0.90284 0.90251 0.91091 0.92351 0.90585 0.91535 0.90342 0.90264 0.95308 0.95600 0.90582 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 10.42 127.77 1.33 4.43 16 2 N -1.00 -42.28 3.23 -543.25 -1.75 -44.04 16 3 C 0.28 14.11 5.08 85.64 0.43 14.54 16 4 C -0.55 -31.74 9.38 25.60 0.24 -31.50 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.82 5.46 84.66 0.46 1.28 16 7 N -0.92 -54.16 13.29 21.45 0.28 -53.88 16 8 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 S 2.79 114.20 6.02 -56.49 -0.34 113.86 16 13 O -1.01 -50.38 16.18 -128.00 -2.07 -52.45 16 14 O -1.01 -42.08 15.29 -128.00 -1.96 -44.03 16 15 N -1.01 -30.19 3.24 -539.15 -1.75 -31.93 16 16 C 0.09 2.42 10.31 127.77 1.32 3.73 16 17 C 0.11 2.62 5.26 86.38 0.45 3.08 16 18 C -0.14 -3.01 4.73 30.59 0.14 -2.86 16 19 C 0.09 1.69 1.90 44.94 0.09 1.78 16 20 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 21 C -0.11 -1.67 5.09 30.64 0.16 -1.52 16 22 C -0.12 -1.54 6.00 30.67 0.18 -1.36 16 23 C -0.11 -1.46 6.09 30.65 0.19 -1.28 16 24 C 0.05 0.82 5.46 86.33 0.47 1.29 16 25 N -0.55 -10.39 4.75 -897.18 -4.26 -14.65 16 26 C 0.02 0.35 8.86 127.69 1.13 1.49 16 27 H 0.07 1.92 5.61 -2.39 -0.01 1.90 16 28 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 29 H 0.07 2.34 7.02 -2.39 -0.02 2.32 16 30 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 31 H 0.02 0.91 7.26 -2.39 -0.02 0.89 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.61 7.44 -2.39 -0.02 1.60 16 35 H 0.10 1.99 8.07 -2.39 -0.02 1.97 16 36 H 0.11 1.86 6.78 -2.39 -0.02 1.85 16 37 H 0.08 1.99 6.91 -2.39 -0.02 1.97 16 38 H 0.06 1.51 3.77 -2.38 -0.01 1.50 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.08 1.01 6.69 -2.38 -0.02 0.99 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 46 H 0.08 1.12 8.00 -2.39 -0.02 1.10 16 47 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.03 0.50 8.11 -2.39 -0.02 0.48 16 49 H 0.08 1.28 7.95 -2.39 -0.02 1.26 16 50 H 0.06 1.41 6.24 -2.39 -0.01 1.39 16 Total: -1.00 -71.23 392.33 -2.32 -73.55 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.90 Total: 13.50 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 6.60 Total: -6.90 kcal Atomic # 7 Polarization: -137.03 SS G_CDS: -7.47 Total: -144.50 kcal Atomic # 8 Polarization: -92.46 SS G_CDS: -4.03 Total: -96.49 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 114.20 SS G_CDS: -0.34 Total: 113.86 kcal Total: -71.23 -2.32 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds