Wall clock time and date at job start Tue Mar 31 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99836 * 2 1 4 4 C 1.50696 * 109.47137 * 276.64002 * 3 2 1 5 5 H 1.07997 * 120.00204 * 4.94856 * 4 3 2 6 6 C 1.37881 * 119.99903 * 184.94909 * 4 3 2 7 7 N 1.31510 * 120.00181 * 5.08351 * 6 4 3 8 8 Si 1.86800 * 119.99992 * 185.08658 * 6 4 3 9 9 H 1.48507 * 109.46824 * 94.99341 * 8 6 4 10 10 H 1.48498 * 109.47360 * 214.98987 * 8 6 4 11 11 H 1.48502 * 109.47128 * 334.99423 * 8 6 4 12 12 S 1.65601 * 120.00606 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39862 * 341.41995 * 12 2 1 14 14 O 1.42096 * 106.40242 * 208.50137 * 12 2 1 15 15 N 1.65605 * 107.21795 * 94.95803 * 12 2 1 16 16 C 1.46499 * 120.00001 * 85.36652 * 15 12 2 17 17 C 1.46498 * 119.99795 * 265.36953 * 15 12 2 18 18 C 1.53005 * 109.46931 * 265.02229 * 17 15 12 19 19 C 1.53005 * 109.47125 * 185.48013 * 18 17 15 20 20 H 1.08999 * 109.45696 * 55.83755 * 19 18 17 21 21 C 1.53035 * 109.46474 * 295.85748 * 19 18 17 22 22 C 1.53113 * 109.27799 * 180.81249 * 21 19 18 23 23 C 1.53124 * 109.16051 * 57.65277 * 22 21 19 24 24 C 1.53032 * 109.27906 * 302.34571 * 23 22 21 25 25 N 1.46827 * 109.51768 * 59.17921 * 24 23 22 26 26 C 1.46903 * 110.98622 * 174.15644 * 25 24 23 27 27 H 1.08997 * 109.46767 * 269.99481 * 1 2 3 28 28 H 1.08989 * 109.47371 * 29.99996 * 1 2 3 29 29 H 1.09000 * 109.46520 * 149.99897 * 1 2 3 30 30 H 1.08998 * 109.46829 * 36.63917 * 3 2 1 31 31 H 1.08997 * 109.47414 * 156.63345 * 3 2 1 32 32 H 0.96998 * 120.00158 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.46840 * 270.00101 * 16 15 12 34 34 H 1.09002 * 109.46678 * 30.00096 * 16 15 12 35 35 H 1.09002 * 109.46806 * 149.99678 * 16 15 12 36 36 H 1.08996 * 109.47116 * 145.02471 * 17 15 12 37 37 H 1.09003 * 109.47670 * 25.02038 * 17 15 12 38 38 H 1.09003 * 109.47109 * 65.48359 * 18 17 15 39 39 H 1.09003 * 109.47233 * 305.48196 * 18 17 15 40 40 H 1.08999 * 109.50039 * 300.75590 * 21 19 18 41 41 H 1.09000 * 109.49924 * 60.87537 * 21 19 18 42 42 H 1.08995 * 109.52286 * 177.55884 * 22 21 19 43 43 H 1.09004 * 109.52553 * 297.68977 * 22 21 19 44 44 H 1.09003 * 109.49775 * 62.28809 * 23 22 21 45 45 H 1.08997 * 109.50705 * 182.39993 * 23 22 21 46 46 H 1.09007 * 109.46078 * 179.19083 * 24 23 22 47 47 H 1.08994 * 109.46345 * 299.17192 * 24 23 22 48 48 H 1.08997 * 109.46915 * 191.01403 * 26 25 24 49 49 H 1.09003 * 109.46686 * 311.00694 * 26 25 24 50 50 H 1.08996 * 109.47124 * 71.00718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3064 1.7859 -1.4112 5 1 1.8057 1.2685 -2.2161 6 6 3.0453 2.9198 -1.6749 7 7 3.7361 3.4927 -0.7136 8 14 3.0650 3.6422 -3.3974 9 1 2.0426 4.7148 -3.4960 10 1 4.4074 4.2105 -3.6806 11 1 2.7605 2.5758 -4.3850 12 16 2.2932 -1.4341 -0.0006 13 8 1.3748 -2.4278 0.4333 14 8 3.5312 -1.1828 0.6499 15 7 2.6567 -1.7895 -1.5767 16 6 3.8618 -1.2306 -2.1944 17 6 1.7731 -2.6627 -2.3532 18 6 2.2935 -4.1002 -2.2908 19 6 1.4520 -4.9876 -3.2104 20 1 1.4626 -4.5772 -4.2201 21 6 0.0120 -5.0359 -2.6946 22 6 -0.8213 -5.9409 -3.6061 23 6 -0.1885 -7.3347 -3.6449 24 6 1.2573 -7.2198 -4.1331 25 7 2.0127 -6.3447 -3.2279 26 6 3.4372 -6.3213 -3.5858 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6650 1.9957 0.6133 31 1 3.1961 1.1118 0.4076 32 1 4.2556 4.2906 -0.8990 33 1 3.6224 -0.2729 -2.6565 34 1 4.6268 -1.0850 -1.4318 35 1 4.2327 -1.9182 -2.9545 36 1 1.7522 -2.3287 -3.3905 37 1 0.7661 -2.6226 -1.9381 38 1 2.2231 -4.4680 -1.2671 39 1 3.3339 -4.1244 -2.6149 40 1 0.0022 -5.4332 -1.6797 41 1 -0.4091 -4.0305 -2.6966 42 1 -1.8372 -6.0128 -3.2178 43 1 -0.8447 -5.5224 -4.6123 44 1 -0.2016 -7.7682 -2.6449 45 1 -0.7529 -7.9719 -4.3257 46 1 1.7152 -8.2089 -4.1482 47 1 1.2688 -6.7989 -5.1384 48 1 4.0027 -5.8298 -2.7941 49 1 3.7976 -7.3426 -3.7094 50 1 3.5683 -5.7742 -4.5194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330907150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:49 Heat of formation + Delta-G solvation = -78.826950 kcal Electronic energy + Delta-G solvation = -28974.602671 eV Core-core repulsion = 25163.319269 eV Total energy + Delta-G solvation = -3811.283403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.55252 -36.68769 -36.25880 -35.45579 -35.15847 -33.75249 -32.65500 -32.49547 -28.72029 -27.77567 -26.80033 -25.73455 -25.07971 -23.55621 -22.69968 -22.22264 -20.93655 -19.79128 -18.29983 -17.23554 -16.76839 -16.45991 -16.10353 -15.68545 -15.32987 -14.83613 -14.68694 -14.56476 -14.29799 -14.12872 -13.57658 -13.42892 -13.28275 -13.18259 -12.90279 -12.47458 -12.32595 -12.23507 -12.20694 -12.06331 -11.84320 -11.81758 -11.66449 -11.46371 -11.19570 -11.16082 -11.12578 -11.07177 -10.84668 -10.80216 -10.70024 -10.52185 -10.41996 -10.18718 -10.09321 -9.79279 -8.61255 -8.51281 -8.45128 -8.01706 -6.13696 -4.19926 1.31026 3.21731 3.29717 3.30796 3.49927 3.72839 4.14985 4.33452 4.59330 4.66051 4.74196 4.89510 4.98661 5.06056 5.14922 5.18950 5.20898 5.26443 5.31390 5.38656 5.47219 5.49379 5.57452 5.62274 5.67727 5.71062 5.77026 5.78576 5.84951 5.95205 5.99748 6.05963 6.09864 6.14491 6.25597 6.26985 6.37064 6.46068 6.52998 6.57250 6.93231 6.95410 7.03105 7.32400 7.43420 7.64857 7.83880 8.13886 8.85352 9.45464 10.94089 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.003484 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.533053 B = 8035.410377 C = 8494.740158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.999 5.999 3 C 0.243 3.757 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.786 3.214 13 O -0.996 6.996 14 O -0.980 6.980 15 N -1.005 6.005 16 C 0.089 3.911 17 C 0.131 3.869 18 C -0.138 4.138 19 C 0.091 3.909 20 H 0.041 0.959 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.118 4.118 24 C 0.057 3.943 25 N -0.539 5.539 26 C 0.022 3.978 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.030 0.970 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -17.413 -7.708 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.840 5.840 3 C 0.121 3.879 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 S 2.795 3.205 13 O -0.980 6.980 14 O -0.964 6.964 15 N -0.843 5.843 16 C -0.056 4.056 17 C 0.004 3.996 18 C -0.178 4.178 19 C -0.017 4.017 20 H 0.059 0.941 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.071 4.071 25 N -0.264 5.264 26 C -0.126 4.126 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.417 -17.939 -6.435 19.813 hybrid contribution 0.072 1.176 -2.255 2.544 sum -5.345 -16.763 -8.690 19.623 Atomic orbital electron populations 1.21211 0.80215 1.02028 1.00572 1.57704 1.14126 1.23572 1.88645 1.19218 0.92283 0.79013 0.97414 1.21543 1.31582 1.10860 0.93760 0.91882 1.24968 0.94860 0.96908 0.97161 1.69945 1.29485 1.20711 1.32410 0.86580 0.77460 0.79466 0.84449 1.20676 1.21119 1.19813 1.01782 0.73064 0.72644 0.73050 1.93526 1.65172 1.58889 1.80454 1.93559 1.44434 1.85703 1.72656 1.57786 1.33648 1.60360 1.32506 1.21552 0.85992 0.98981 0.99090 1.21141 0.93040 0.88387 0.97010 1.22198 0.99721 0.94584 1.01261 1.21592 0.94724 0.87748 0.97681 0.94105 1.21722 0.93386 1.00039 1.00330 1.21596 0.99117 0.95472 0.99789 1.21593 0.94611 0.97252 1.02074 1.22079 0.94517 0.96974 0.93571 1.61898 1.02461 1.10412 1.51580 1.22416 0.88968 1.01619 0.99630 0.93844 0.90916 0.92846 0.94951 0.92786 0.92554 0.91000 0.90398 0.92351 0.90977 0.90278 0.90310 0.91185 0.90517 0.91025 0.91708 0.92431 0.91019 0.91813 0.90972 0.95200 0.90735 0.91723 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.85 10.32 59.85 0.62 2.47 16 2 N -1.00 -20.96 3.23 -123.06 -0.40 -21.35 16 3 C 0.24 6.02 5.44 -5.19 -0.03 6.00 16 4 C -0.54 -13.75 8.68 -34.44 -0.30 -14.05 16 5 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 6 C 0.06 1.70 5.45 -17.82 -0.10 1.61 16 7 N -0.89 -25.00 13.28 55.43 0.74 -24.26 16 8 Si 0.89 20.21 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 S 2.79 56.80 6.04 -107.50 -0.65 56.15 16 13 O -1.00 -20.34 15.86 -57.17 -0.91 -21.24 16 14 O -0.98 -23.21 15.49 -57.17 -0.89 -24.09 16 15 N -1.01 -17.26 3.24 -121.76 -0.39 -17.65 16 16 C 0.09 1.50 10.70 59.85 0.64 2.14 16 17 C 0.13 1.84 4.94 -4.04 -0.02 1.82 16 18 C -0.14 -1.78 4.73 -26.73 -0.13 -1.90 16 19 C 0.09 1.02 1.90 -67.72 -0.13 0.89 16 20 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 21 C -0.12 -1.26 5.09 -26.65 -0.14 -1.39 16 22 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 23 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 24 C 0.06 0.51 5.46 -3.85 -0.02 0.49 16 25 N -0.54 -5.79 4.75 -234.94 -1.11 -6.91 16 26 C 0.02 0.21 8.88 60.07 0.53 0.74 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.82 16 29 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 30 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.05 1.48 6.95 -51.93 -0.36 1.12 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 34 H 0.08 1.41 7.06 -51.93 -0.37 1.04 16 35 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.08 1.09 6.18 -51.93 -0.32 0.77 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.86 6.23 -51.93 -0.32 0.54 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 47 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 0.75 6.54 -51.93 -0.34 0.41 16 49 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 50 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -30.79 397.08 -11.16 -41.95 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -9.13 Total: -0.15 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 0.61 Total: -3.60 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.17 Total: -70.18 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.79 Total: -45.34 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 56.80 SS G_CDS: -0.65 Total: 56.15 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.79 -11.16 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.876 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds