Wall clock time and date at job start Tue Mar 31 2020 17:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.50707 * 109.47204 * 240.00179 * 2 1 3 5 5 H 1.07997 * 120.00081 * 239.99676 * 4 2 1 6 6 C 1.37887 * 119.99543 * 59.99759 * 4 2 1 7 7 N 1.31508 * 120.00199 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99453 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47070 * 60.00374 * 8 6 4 10 10 H 1.48506 * 109.46846 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47423 * 299.99831 * 8 6 4 12 12 N 1.46493 * 109.47521 * 120.00356 * 2 1 3 13 13 C 1.46501 * 120.00448 * 54.70654 * 12 2 1 14 14 S 1.65599 * 120.00168 * 234.70456 * 12 2 1 15 15 O 1.42104 * 106.40335 * 341.45087 * 14 12 2 16 16 O 1.42101 * 106.40550 * 208.52848 * 14 12 2 17 17 N 1.65606 * 107.21818 * 94.98870 * 14 12 2 18 18 C 1.47597 * 118.64343 * 94.08326 * 17 14 12 19 19 C 1.53947 * 112.14281 * 137.84739 * 18 17 14 20 20 C 1.50881 * 110.09642 * 319.43434 * 19 18 17 21 21 C 1.52576 * 109.35679 * 91.88463 * 20 19 18 22 22 H 1.08995 * 108.51237 * 36.24173 * 21 20 19 23 23 N 1.46899 * 108.51344 * 153.73611 * 21 20 19 24 24 C 1.46899 * 111.00067 * 72.05970 * 23 21 20 25 25 C 1.46900 * 110.99851 * 196.01338 * 23 21 20 26 26 C 1.47092 * 114.32601 * 274.99008 * 21 20 19 27 27 C 1.44580 * 118.64367 * 274.06387 * 17 14 12 28 28 H 1.09005 * 109.46886 * 183.45522 * 1 2 3 29 29 H 1.08999 * 109.47464 * 303.45456 * 1 2 3 30 30 H 1.08999 * 109.47698 * 63.46052 * 1 2 3 31 31 H 0.97000 * 119.99782 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47039 * 274.63475 * 13 12 2 33 33 H 1.09004 * 109.46786 * 34.62749 * 13 12 2 34 34 H 1.08993 * 109.47723 * 154.63221 * 13 12 2 35 35 H 1.08999 * 108.95101 * 258.53054 * 18 17 14 36 36 H 1.09005 * 108.94892 * 17.16605 * 18 17 14 37 37 H 1.09000 * 109.37090 * 79.62605 * 19 18 17 38 38 H 1.09003 * 109.37124 * 199.24655 * 19 18 17 39 39 H 1.08999 * 109.49224 * 331.92100 * 20 19 18 40 40 H 1.08997 * 109.49238 * 211.84894 * 20 19 18 41 41 H 1.09007 * 109.47329 * 67.04424 * 24 23 21 42 42 H 1.08999 * 109.47718 * 187.04528 * 24 23 21 43 43 H 1.09000 * 109.47151 * 307.04777 * 24 23 21 44 44 H 1.08997 * 109.47039 * 60.00241 * 25 23 21 45 45 H 1.09001 * 109.46471 * 180.02562 * 25 23 21 46 46 H 1.08999 * 109.47193 * 299.99946 * 25 23 21 47 47 H 1.08998 * 109.32897 * 183.06470 * 26 21 20 48 48 H 1.09003 * 109.33115 * 302.54226 * 26 21 20 49 49 H 1.09001 * 109.45093 * 150.70283 * 27 17 14 50 50 H 1.09007 * 109.44594 * 30.78737 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8073 -1.1187 -4.0079 12 7 2.0183 -0.6906 1.1960 13 6 1.5715 -2.0550 1.4880 14 16 3.0756 0.0708 2.2182 15 8 3.6444 1.1440 1.4805 16 8 3.8524 -0.9518 2.8266 17 7 2.1782 0.7588 3.4280 18 6 1.9795 0.0020 4.6795 19 6 2.1190 0.8947 5.9259 20 6 3.2644 1.8603 5.7464 21 6 2.7402 3.1602 5.1436 22 1 1.7518 3.3598 5.5576 23 7 3.6368 4.2538 5.5414 24 6 4.9196 4.1676 4.8308 25 6 3.0016 5.5605 5.3247 26 6 2.6385 3.1500 3.6762 27 6 1.6222 2.0763 3.2150 28 1 -0.3633 -1.0259 0.0619 29 1 -0.3634 0.5665 0.8574 30 1 -0.3634 0.4592 -0.9193 31 1 0.7094 1.1619 -3.4844 32 1 0.6259 -2.0196 2.0290 33 1 1.4356 -2.6004 0.5541 34 1 2.3204 -2.5599 2.0980 35 1 0.9835 -0.4407 4.6711 36 1 2.7196 -0.7966 4.7315 37 1 1.1952 1.4535 6.0756 38 1 2.3067 0.2697 6.7991 39 1 4.0072 1.4235 5.0789 40 1 3.7213 2.0666 6.7142 41 1 4.7603 4.3566 3.7691 42 1 5.6083 4.9107 5.2328 43 1 5.3420 3.1715 4.9631 44 1 2.0891 5.6237 5.9174 45 1 3.6872 6.3522 5.6269 46 1 2.7576 5.6752 4.2685 47 1 2.3098 4.1300 3.3305 48 1 3.6163 2.9285 3.2483 49 1 0.7008 2.1785 3.7884 50 1 1.4065 2.2122 2.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332023481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:42 Heat of formation + Delta-G solvation = -60.238380 kcal Electronic energy + Delta-G solvation = -29916.927608 eV Core-core repulsion = 26106.450266 eV Total energy + Delta-G solvation = -3810.477342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77447 -36.78702 -36.51065 -36.14657 -35.19504 -32.86793 -32.58646 -31.53439 -29.08221 -27.76613 -26.37893 -25.64120 -25.35148 -25.07766 -23.08160 -21.02570 -20.53197 -19.77925 -18.22753 -17.37991 -16.90807 -16.43330 -16.31627 -15.65529 -15.18184 -14.96546 -14.75017 -14.53001 -14.20805 -13.84808 -13.54913 -13.42495 -13.13340 -12.90735 -12.65411 -12.64487 -12.12930 -12.06207 -12.01936 -11.85994 -11.78918 -11.67216 -11.56687 -11.35230 -11.22861 -11.07657 -10.91506 -10.87850 -10.82891 -10.81025 -10.59565 -10.45621 -10.34291 -10.24557 -10.04450 -9.34465 -8.86230 -8.45063 -8.31969 -7.96613 -6.08127 -4.15036 1.18148 3.29633 3.33877 3.37212 3.45239 3.88411 4.04249 4.39395 4.54393 4.78635 4.85602 4.96809 5.10452 5.16503 5.18043 5.23157 5.28929 5.30270 5.35746 5.44528 5.55142 5.62011 5.66594 5.72832 5.75175 5.77975 5.79238 5.86964 5.97001 6.07046 6.09347 6.14267 6.23217 6.27799 6.34902 6.39530 6.62342 6.73753 6.81388 6.90493 6.97690 7.00435 7.03508 7.46576 7.61448 7.78116 8.03913 8.26672 8.86710 9.50720 10.97085 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003985 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.955325 B = 7024.418880 C = 7624.607316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.772 3.228 15 O -0.970 6.970 16 O -0.997 6.997 17 N -1.003 6.003 18 C 0.113 3.887 19 C -0.122 4.122 20 C -0.105 4.105 21 C 0.088 3.912 22 H 0.075 0.925 23 N -0.545 5.545 24 C 0.015 3.985 25 C 0.020 3.980 26 C -0.177 4.177 27 C 0.136 3.864 28 H 0.032 0.968 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 3.882 16.907 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.832 5.832 13 C -0.049 4.049 14 S 2.783 3.217 15 O -0.954 6.954 16 O -0.981 6.981 17 N -0.841 5.841 18 C -0.012 4.012 19 C -0.162 4.162 20 C -0.143 4.143 21 C -0.020 4.020 22 H 0.093 0.907 23 N -0.268 5.268 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.217 4.217 27 C 0.009 3.991 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.209 4.017 17.211 17.675 hybrid contribution -0.374 -0.291 -1.800 1.861 sum -0.165 3.726 15.411 15.856 Atomic orbital electron populations 1.22095 0.98145 0.99265 1.01072 1.18715 0.91412 0.92932 0.80375 0.92436 1.21333 1.31633 1.13041 0.90183 0.92099 1.24894 0.94921 0.95000 0.98956 1.69837 1.36496 1.22654 1.23882 0.86571 0.79405 0.79615 0.81919 1.20204 1.21170 1.20135 1.57721 1.65301 1.23209 1.36988 1.21274 0.98118 0.83513 1.02029 1.02223 0.74007 0.73191 0.72317 1.93593 1.75480 1.55330 1.70955 1.93498 1.67935 1.58883 1.77772 1.57813 1.71561 1.25945 1.28797 1.21704 1.02060 0.94063 0.83388 1.21629 0.99123 0.98231 0.97181 1.21062 0.98067 0.93821 1.01316 1.20672 0.96218 0.91344 0.93722 0.90726 1.62467 1.04481 1.02698 1.57187 1.22455 0.91425 1.02555 0.96846 1.22421 0.99608 0.91096 0.99757 1.22040 1.02292 1.00081 0.97300 1.21002 0.95659 0.80762 1.01701 0.94896 0.97134 0.88821 0.92644 0.94349 0.90215 0.91975 0.92098 0.89103 0.91540 0.90664 0.92085 0.90686 0.94676 0.91750 0.91319 0.91583 0.91673 0.95129 0.90805 0.90173 0.90710 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.99 37.15 0.33 -2.95 16 2 C 0.27 6.53 2.60 -69.09 -0.18 6.35 16 3 H 0.06 1.54 6.88 -51.93 -0.36 1.19 16 4 C -0.52 -14.10 8.09 -34.43 -0.28 -14.38 16 5 H 0.06 1.64 7.63 -52.49 -0.40 1.24 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.62 11.30 55.43 0.63 -23.99 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.99 -20.57 3.12 -115.86 -0.36 -20.93 16 13 C 0.10 1.72 9.50 59.85 0.57 2.29 16 14 S 2.77 54.73 5.96 -107.50 -0.64 54.09 16 15 O -0.97 -22.39 14.84 -57.17 -0.85 -23.23 16 16 O -1.00 -20.66 15.09 -57.17 -0.86 -21.53 16 17 N -1.00 -15.03 2.59 -113.30 -0.29 -15.32 16 18 C 0.11 1.36 6.24 -2.95 -0.02 1.35 16 19 C -0.12 -1.20 5.71 -27.30 -0.16 -1.36 16 20 C -0.10 -1.18 4.26 -28.01 -0.12 -1.30 16 21 C 0.09 1.01 1.66 -70.77 -0.12 0.89 16 22 H 0.07 0.79 7.16 -51.93 -0.37 0.41 16 23 N -0.55 -6.12 4.83 -246.93 -1.19 -7.32 16 24 C 0.02 0.18 8.57 60.06 0.51 0.69 16 25 C 0.02 0.19 9.32 60.06 0.56 0.75 16 26 C -0.18 -2.35 4.14 -28.58 -0.12 -2.47 16 27 C 0.14 1.90 5.25 -4.08 -0.02 1.88 16 28 H 0.03 0.69 7.43 -51.93 -0.39 0.31 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 2.34 5.99 -51.93 -0.31 2.03 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 34 H 0.06 1.02 6.99 -51.93 -0.36 0.66 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.17 6.60 -51.93 -0.34 0.83 16 37 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.81 7.08 -51.93 -0.37 0.45 16 40 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.03 0.44 6.68 -51.93 -0.35 0.09 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.81 7.02 -51.93 -0.36 0.45 16 44 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.30 6.48 -51.93 -0.34 -0.03 16 47 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 48 H 0.08 1.27 5.67 -51.93 -0.29 0.97 16 49 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 50 H 0.08 1.31 7.78 -51.92 -0.40 0.91 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -30.99 379.99 -10.66 -41.65 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.67 Total: 1.34 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 0.87 Total: -6.61 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -1.22 Total: -67.56 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.71 Total: -44.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.64 Total: 54.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.99 -10.66 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.588 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds