Wall clock time and date at job start Tue Mar 31 2020 17:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.50707 * 109.47204 * 240.00179 * 2 1 3 5 5 H 1.07997 * 120.00081 * 239.99676 * 4 2 1 6 6 C 1.37887 * 119.99543 * 59.99759 * 4 2 1 7 7 N 1.31508 * 120.00199 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99453 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47070 * 60.00374 * 8 6 4 10 10 H 1.48506 * 109.46846 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47423 * 299.99831 * 8 6 4 12 12 N 1.46493 * 109.47521 * 120.00356 * 2 1 3 13 13 C 1.46501 * 120.00448 * 54.70654 * 12 2 1 14 14 S 1.65599 * 120.00168 * 234.70456 * 12 2 1 15 15 O 1.42104 * 106.40335 * 341.45087 * 14 12 2 16 16 O 1.42101 * 106.40550 * 208.52848 * 14 12 2 17 17 N 1.65606 * 107.21818 * 94.98870 * 14 12 2 18 18 C 1.47597 * 118.64343 * 94.08326 * 17 14 12 19 19 C 1.53947 * 112.14281 * 137.84739 * 18 17 14 20 20 C 1.50881 * 110.09642 * 319.43434 * 19 18 17 21 21 C 1.52576 * 109.35679 * 91.88463 * 20 19 18 22 22 H 1.08995 * 108.51237 * 36.24173 * 21 20 19 23 23 N 1.46899 * 108.51344 * 153.73611 * 21 20 19 24 24 C 1.46899 * 111.00067 * 72.05970 * 23 21 20 25 25 C 1.46900 * 110.99851 * 196.01338 * 23 21 20 26 26 C 1.47092 * 114.32601 * 274.99008 * 21 20 19 27 27 C 1.44580 * 118.64367 * 274.06387 * 17 14 12 28 28 H 1.09005 * 109.46886 * 183.45522 * 1 2 3 29 29 H 1.08999 * 109.47464 * 303.45456 * 1 2 3 30 30 H 1.08999 * 109.47698 * 63.46052 * 1 2 3 31 31 H 0.97000 * 119.99782 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47039 * 274.63475 * 13 12 2 33 33 H 1.09004 * 109.46786 * 34.62749 * 13 12 2 34 34 H 1.08993 * 109.47723 * 154.63221 * 13 12 2 35 35 H 1.08999 * 108.95101 * 258.53054 * 18 17 14 36 36 H 1.09005 * 108.94892 * 17.16605 * 18 17 14 37 37 H 1.09000 * 109.37090 * 79.62605 * 19 18 17 38 38 H 1.09003 * 109.37124 * 199.24655 * 19 18 17 39 39 H 1.08999 * 109.49224 * 331.92100 * 20 19 18 40 40 H 1.08997 * 109.49238 * 211.84894 * 20 19 18 41 41 H 1.09007 * 109.47329 * 67.04424 * 24 23 21 42 42 H 1.08999 * 109.47718 * 187.04528 * 24 23 21 43 43 H 1.09000 * 109.47151 * 307.04777 * 24 23 21 44 44 H 1.08997 * 109.47039 * 60.00241 * 25 23 21 45 45 H 1.09001 * 109.46471 * 180.02562 * 25 23 21 46 46 H 1.08999 * 109.47193 * 299.99946 * 25 23 21 47 47 H 1.08998 * 109.32897 * 183.06470 * 26 21 20 48 48 H 1.09003 * 109.33115 * 302.54226 * 26 21 20 49 49 H 1.09001 * 109.45093 * 150.70283 * 27 17 14 50 50 H 1.09007 * 109.44594 * 30.78737 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8073 -1.1187 -4.0079 12 7 2.0183 -0.6906 1.1960 13 6 1.5715 -2.0550 1.4880 14 16 3.0756 0.0708 2.2182 15 8 3.6444 1.1440 1.4805 16 8 3.8524 -0.9518 2.8266 17 7 2.1782 0.7588 3.4280 18 6 1.9795 0.0020 4.6795 19 6 2.1190 0.8947 5.9259 20 6 3.2644 1.8603 5.7464 21 6 2.7402 3.1602 5.1436 22 1 1.7518 3.3598 5.5576 23 7 3.6368 4.2538 5.5414 24 6 4.9196 4.1676 4.8308 25 6 3.0016 5.5605 5.3247 26 6 2.6385 3.1500 3.6762 27 6 1.6222 2.0763 3.2150 28 1 -0.3633 -1.0259 0.0619 29 1 -0.3634 0.5665 0.8574 30 1 -0.3634 0.4592 -0.9193 31 1 0.7094 1.1619 -3.4844 32 1 0.6259 -2.0196 2.0290 33 1 1.4356 -2.6004 0.5541 34 1 2.3204 -2.5599 2.0980 35 1 0.9835 -0.4407 4.6711 36 1 2.7196 -0.7966 4.7315 37 1 1.1952 1.4535 6.0756 38 1 2.3067 0.2697 6.7991 39 1 4.0072 1.4235 5.0789 40 1 3.7213 2.0666 6.7142 41 1 4.7603 4.3566 3.7691 42 1 5.6083 4.9107 5.2328 43 1 5.3420 3.1715 4.9631 44 1 2.0891 5.6237 5.9174 45 1 3.6872 6.3522 5.6269 46 1 2.7576 5.6752 4.2685 47 1 2.3098 4.1300 3.3305 48 1 3.6163 2.9285 3.2483 49 1 0.7008 2.1785 3.7884 50 1 1.4065 2.2122 2.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332023481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:41 Heat of formation + Delta-G solvation = -82.083421 kcal Electronic energy + Delta-G solvation = -29917.874880 eV Core-core repulsion = 26106.450266 eV Total energy + Delta-G solvation = -3811.424614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73231 -38.42858 -37.89302 -37.52868 -36.86691 -34.55191 -33.83381 -32.54371 -30.90444 -28.61702 -27.40042 -27.32633 -26.97419 -26.29733 -24.05912 -22.59681 -21.81811 -20.69813 -19.69537 -18.84560 -18.53176 -18.19452 -17.56667 -16.89939 -16.72819 -16.19119 -15.83401 -15.67414 -15.33771 -15.14699 -15.02700 -14.72534 -14.51692 -14.16846 -13.92255 -13.80632 -13.75560 -13.41387 -13.21957 -13.16525 -13.14512 -13.02048 -12.93773 -12.77348 -12.76110 -12.60608 -12.54458 -12.27173 -12.18667 -12.14569 -11.94349 -11.78449 -11.67184 -11.52415 -11.38080 -11.23557 -10.51135 -10.00634 -9.65467 -9.24528 -8.13437 -6.27554 -0.35501 1.40368 1.42584 1.49459 2.03619 2.40157 2.54022 3.03657 3.14072 3.36276 3.56783 3.86655 3.95474 4.08548 4.16256 4.19757 4.24484 4.35980 4.41258 4.48283 4.57366 4.58990 4.67017 4.71278 4.74389 4.78760 4.80191 4.89477 4.96268 4.98562 5.00554 5.03382 5.08892 5.12479 5.14901 5.21214 5.23618 5.26592 5.36550 5.44620 5.58586 5.63563 5.83374 5.90377 6.07110 6.14432 6.15523 6.28974 6.79299 7.41211 8.89843 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003985 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.955325 B = 7024.418880 C = 7624.607316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.999 5.999 13 C 0.093 3.907 14 S 2.781 3.219 15 O -1.013 7.013 16 O -1.011 7.011 17 N -0.991 5.991 18 C 0.104 3.896 19 C -0.115 4.115 20 C -0.104 4.104 21 C 0.089 3.911 22 H 0.096 0.904 23 N -0.547 5.547 24 C 0.017 3.983 25 C 0.018 3.982 26 C -0.171 4.171 27 C 0.133 3.867 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.017 0.983 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.022 0.978 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.112 0.888 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 3.593 19.119 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.171 3.829 3 H 0.041 0.959 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.207 1.207 12 N -0.840 5.840 13 C -0.053 4.053 14 S 2.792 3.208 15 O -0.997 6.997 16 O -0.995 6.995 17 N -0.832 5.832 18 C -0.020 4.020 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.019 4.019 22 H 0.114 0.886 23 N -0.270 5.270 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.212 4.212 27 C 0.006 3.994 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.130 0.870 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.328 3.702 19.430 19.824 hybrid contribution 0.146 -0.168 -2.403 2.414 sum -1.181 3.534 17.027 17.430 Atomic orbital electron populations 1.21876 0.96550 0.99964 1.00799 1.18367 0.92457 0.91170 0.80918 0.95875 1.21663 1.31799 1.13085 0.91799 0.92971 1.25602 0.95153 0.95704 1.01520 1.69950 1.37111 1.23505 1.24430 0.85712 0.78421 0.79196 0.78941 1.19012 1.20410 1.20663 1.57624 1.65319 1.24485 1.36590 1.21453 0.99993 0.81862 1.01965 1.01690 0.74066 0.72479 0.72524 1.93533 1.76859 1.56686 1.72600 1.93466 1.68722 1.59462 1.77878 1.57429 1.70952 1.26196 1.28575 1.22044 1.03174 0.94122 0.82661 1.21646 0.99279 0.97930 0.96544 1.21072 0.98195 0.94030 1.00941 1.20702 0.97314 0.91688 0.92152 0.88581 1.62525 1.04282 1.03458 1.56698 1.22427 0.92268 1.02453 0.95981 1.22496 1.00429 0.90473 0.99598 1.21995 1.00342 1.00028 0.98791 1.21136 0.97214 0.80135 1.00880 0.93894 0.94598 0.91459 0.92570 0.91133 0.91498 0.90914 0.89465 0.90215 0.89420 0.88297 0.94946 0.89824 0.96451 0.90231 0.92318 0.90011 0.90750 0.95903 0.90350 0.93471 0.86958 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.99 71.98 0.65 -5.26 16 2 C 0.28 13.66 2.60 44.25 0.12 13.77 16 3 H 0.02 1.31 6.88 -2.39 -0.02 1.30 16 4 C -0.54 -30.01 8.09 25.60 0.21 -29.80 16 5 H 0.05 2.88 7.63 -2.91 -0.02 2.86 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.31 11.30 21.45 0.24 -51.07 16 8 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 N -1.00 -41.67 3.12 -520.47 -1.62 -43.30 16 13 C 0.09 3.19 9.50 127.77 1.21 4.40 16 14 S 2.78 111.91 5.96 -56.49 -0.34 111.57 16 15 O -1.01 -49.33 14.84 -128.00 -1.90 -51.23 16 16 O -1.01 -42.35 15.09 -128.00 -1.93 -44.28 16 17 N -0.99 -28.69 2.59 -512.39 -1.33 -30.01 16 18 C 0.10 2.22 6.24 86.49 0.54 2.76 16 19 C -0.11 -1.83 5.71 30.23 0.17 -1.65 16 20 C -0.10 -2.16 4.26 29.76 0.13 -2.03 16 21 C 0.09 1.87 1.66 42.94 0.07 1.94 16 22 H 0.10 1.64 7.16 -2.39 -0.02 1.63 16 23 N -0.55 -11.45 4.83 -935.15 -4.52 -15.97 16 24 C 0.02 0.40 8.57 127.69 1.09 1.49 16 25 C 0.02 0.31 9.32 127.69 1.19 1.50 16 26 C -0.17 -4.51 4.14 29.39 0.12 -4.39 16 27 C 0.13 3.58 5.25 87.37 0.46 4.04 16 28 H 0.04 1.78 7.43 -2.38 -0.02 1.76 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 3.39 5.99 -2.39 -0.01 3.37 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.45 7.37 -2.38 -0.02 2.44 16 34 H 0.07 2.32 6.99 -2.39 -0.02 2.30 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.91 6.60 -2.38 -0.02 1.90 16 37 H 0.09 1.09 7.32 -2.39 -0.02 1.07 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.03 0.85 7.08 -2.39 -0.02 0.84 16 40 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 41 H 0.02 0.45 6.68 -2.38 -0.02 0.43 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.44 7.02 -2.39 -0.02 1.42 16 44 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.02 0.43 6.48 -2.39 -0.02 0.41 16 47 H 0.08 1.96 6.35 -2.39 -0.02 1.94 16 48 H 0.05 1.56 5.67 -2.39 -0.01 1.55 16 49 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 50 H 0.06 1.81 7.78 -2.38 -0.02 1.79 16 Total: -1.00 -69.24 379.99 -2.05 -71.29 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.91 Total: 18.93 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 6.41 Total: -11.66 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -7.23 Total: -140.35 kcal Atomic # 8 Polarization: -91.68 SS G_CDS: -3.83 Total: -95.51 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 111.91 SS G_CDS: -0.34 Total: 111.57 kcal Total: -69.24 -2.05 -71.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.793 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds