Wall clock time and date at job start Tue Mar 31 2020 17:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47436 * 2 1 4 4 C 1.50698 * 109.47437 * 120.00154 * 2 1 3 5 5 H 1.08000 * 120.00202 * 119.99447 * 4 2 1 6 6 C 1.37875 * 119.99921 * 300.00236 * 4 2 1 7 7 N 1.31509 * 119.99916 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99887 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47144 * 90.00560 * 8 6 4 10 10 H 1.48506 * 109.46714 * 210.00316 * 8 6 4 11 11 H 1.48497 * 109.47292 * 330.00113 * 8 6 4 12 12 N 1.46504 * 109.46669 * 240.00292 * 2 1 3 13 13 C 1.46502 * 119.99881 * 295.81400 * 12 2 1 14 14 S 1.65598 * 120.00202 * 115.81964 * 12 2 1 15 15 O 1.42100 * 106.40379 * 161.80167 * 14 12 2 16 16 O 1.42107 * 106.40084 * 28.87929 * 14 12 2 17 17 N 1.65601 * 107.21807 * 275.34108 * 14 12 2 18 18 C 1.47601 * 118.64305 * 92.97981 * 17 14 12 19 19 C 1.53946 * 112.14212 * 137.88935 * 18 17 14 20 20 C 1.50880 * 110.09684 * 319.43668 * 19 18 17 21 21 C 1.52563 * 109.35718 * 91.88425 * 20 19 18 22 22 H 1.09001 * 108.51271 * 36.24527 * 21 20 19 23 23 N 1.46898 * 108.38955 * 153.82586 * 21 20 19 24 24 C 1.46901 * 111.00398 * 73.19651 * 23 21 20 25 25 C 1.46906 * 111.00174 * 197.15223 * 23 21 20 26 26 C 1.47091 * 114.32704 * 274.98838 * 21 20 19 27 27 C 1.44575 * 118.64421 * 273.00008 * 17 14 12 28 28 H 1.09002 * 109.47383 * 66.20676 * 1 2 3 29 29 H 1.08994 * 109.47167 * 186.20917 * 1 2 3 30 30 H 1.09007 * 109.46929 * 306.21075 * 1 2 3 31 31 H 0.97000 * 119.99809 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47193 * 270.00323 * 13 12 2 33 33 H 1.09004 * 109.46780 * 30.00715 * 13 12 2 34 34 H 1.08999 * 109.46781 * 149.99943 * 13 12 2 35 35 H 1.09003 * 108.95022 * 258.57838 * 18 17 14 36 36 H 1.09008 * 108.95186 * 17.20439 * 18 17 14 37 37 H 1.09007 * 109.36601 * 79.62896 * 19 18 17 38 38 H 1.09002 * 109.36850 * 199.24189 * 19 18 17 39 39 H 1.09000 * 109.48942 * 331.91512 * 20 19 18 40 40 H 1.08997 * 109.48794 * 211.84890 * 20 19 18 41 41 H 1.09004 * 109.46435 * 65.89385 * 24 23 21 42 42 H 1.08992 * 109.47716 * 185.89476 * 24 23 21 43 43 H 1.08998 * 109.46662 * 305.89909 * 24 23 21 44 44 H 1.09004 * 109.46824 * 60.97486 * 25 23 21 45 45 H 1.08994 * 109.47060 * 180.97280 * 25 23 21 46 46 H 1.09001 * 109.46876 * 300.97828 * 25 23 21 47 47 H 1.08995 * 109.33165 * 183.06687 * 26 21 20 48 48 H 1.09005 * 109.33110 * 302.54589 * 26 21 20 49 49 H 1.08996 * 109.44795 * 150.66061 * 27 17 14 50 50 H 1.08999 * 109.44948 * 30.74596 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6994 10 1 0.9773 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 1.7414 -2.1171 -1.3828 14 16 2.8831 0.1412 -2.3375 15 8 3.5618 -0.8344 -3.1165 16 8 3.5520 1.1890 -1.6491 17 7 1.7902 0.8681 -3.3472 18 6 1.3688 2.2522 -3.0551 19 6 1.2902 3.1155 -4.3272 20 6 2.4544 2.8069 -5.2360 21 6 2.0523 1.7114 -6.2187 22 1 1.0073 1.8581 -6.4919 23 7 2.8732 1.8504 -7.4290 24 6 4.2540 1.4143 -7.1816 25 6 2.2818 1.1133 -8.5537 26 6 2.2121 0.3441 -5.7005 27 6 1.2878 0.1207 -4.4783 28 1 -0.3634 0.4146 -0.9403 29 1 -0.3633 -1.0216 0.1111 30 1 -0.3633 0.6071 0.8292 31 1 1.9033 -0.5281 4.4374 32 1 2.5449 -2.7042 -0.9383 33 1 0.7970 -2.3700 -0.9008 34 1 1.6762 -2.3382 -2.4481 35 1 0.3876 2.2308 -2.5806 36 1 2.0836 2.7018 -2.3658 37 1 0.3574 2.9044 -4.8503 38 1 1.3167 4.1696 -4.0509 39 1 3.3013 2.4676 -4.6395 40 1 2.7337 3.7050 -5.7868 41 1 4.2659 0.3433 -6.9789 42 1 4.8644 1.6247 -8.0597 43 1 4.6561 1.9512 -6.3225 44 1 1.2924 1.5155 -8.7716 45 1 2.9184 1.2189 -9.4321 46 1 2.1957 0.0587 -8.2919 47 1 1.9553 -0.3704 -6.4825 48 1 3.2490 0.1904 -5.4015 49 1 0.2801 0.4595 -4.7185 50 1 1.2640 -0.9405 -4.2304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332023499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:48 Heat of formation + Delta-G solvation = -50.579367 kcal Electronic energy + Delta-G solvation = -29967.078780 eV Core-core repulsion = 26157.020284 eV Total energy + Delta-G solvation = -3810.058496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.89221 -36.92405 -36.62844 -36.41677 -35.33860 -32.96732 -32.51091 -31.65548 -30.08136 -27.87063 -26.51389 -25.73930 -25.44825 -25.07427 -23.20200 -21.17039 -20.68594 -19.87594 -18.36533 -17.45633 -17.22383 -16.62636 -16.33697 -15.83766 -15.40238 -14.95626 -14.87183 -14.77659 -14.33682 -13.97111 -13.63923 -13.57798 -13.27644 -13.01191 -12.84352 -12.73880 -12.32903 -12.26645 -12.19034 -12.10467 -11.95474 -11.94126 -11.78703 -11.74294 -11.51085 -11.30516 -11.17246 -11.07512 -10.96114 -10.88103 -10.64063 -10.54975 -10.46075 -10.20303 -9.62545 -9.40470 -8.98828 -8.66430 -8.43732 -8.13559 -6.14800 -4.15480 1.02218 3.20115 3.28720 3.31602 3.34130 3.76806 3.90664 4.32308 4.45101 4.61932 4.76870 4.84400 4.99597 5.04449 5.06868 5.14898 5.17145 5.17725 5.25276 5.32122 5.41284 5.43113 5.51582 5.63330 5.64830 5.65758 5.73524 5.79876 5.89049 5.93926 6.02053 6.05694 6.11881 6.15446 6.19967 6.22638 6.26924 6.32462 6.44981 6.55273 6.72606 6.81289 6.87035 6.90040 7.26304 7.37046 7.61465 8.45010 8.89340 9.44880 10.98268 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.003917 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.339997 B = 7146.921805 C = 7575.171143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.241 3.759 3 H 0.054 0.946 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.985 5.985 13 C 0.110 3.890 14 S 2.774 3.226 15 O -0.987 6.987 16 O -0.974 6.974 17 N -1.003 6.003 18 C 0.110 3.890 19 C -0.122 4.122 20 C -0.105 4.105 21 C 0.088 3.912 22 H 0.075 0.925 23 N -0.545 5.545 24 C 0.016 3.984 25 C 0.020 3.980 26 C -0.176 4.176 27 C 0.137 3.863 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.028 0.972 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 4.821 -21.145 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.136 3.864 3 H 0.071 0.929 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.826 5.826 13 C -0.036 4.036 14 S 2.784 3.216 15 O -0.971 6.971 16 O -0.958 6.958 17 N -0.841 5.841 18 C -0.015 4.015 19 C -0.161 4.161 20 C -0.143 4.143 21 C -0.020 4.020 22 H 0.093 0.907 23 N -0.268 5.268 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.217 4.217 27 C 0.010 3.990 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.668 5.377 -21.169 22.147 hybrid contribution -1.089 -0.267 0.526 1.239 sum -4.757 5.110 -20.643 21.791 Atomic orbital electron populations 1.22515 0.99213 1.01645 0.98831 1.19050 0.90222 0.93456 0.83654 0.92862 1.21136 1.32531 1.14299 0.88152 0.89996 1.24900 0.95725 0.96560 0.95688 1.69871 1.45180 1.40144 0.97968 0.86955 0.80540 0.83872 0.77496 1.20381 1.22031 1.18946 1.57507 1.73345 1.17954 1.33829 1.21183 1.02380 0.80876 0.99128 1.02215 0.73808 0.73048 0.72561 1.93542 1.71548 1.61335 1.70694 1.93579 1.71507 1.57175 1.73490 1.57799 1.64297 1.22421 1.39581 1.21775 1.01407 0.80530 0.97756 1.21631 0.98852 0.99729 0.95909 1.21071 0.98404 0.98450 0.96397 1.20669 0.97448 0.94076 0.89783 0.90666 1.62449 1.02631 1.56030 1.05698 1.22459 0.89678 0.99040 1.02066 1.22418 1.00186 0.96181 0.94019 1.22046 1.02624 0.98137 0.98861 1.20976 0.97419 0.95298 0.85341 0.94739 0.92138 0.93430 0.92422 0.92865 0.90907 0.93092 0.91751 0.88739 0.91573 0.90470 0.92002 0.90578 0.94823 0.91694 0.91220 0.91561 0.91638 0.95332 0.90935 0.90194 0.90521 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.52 37.16 0.32 -2.92 16 2 C 0.24 5.50 2.22 -69.08 -0.15 5.34 16 3 H 0.05 1.28 6.05 -51.93 -0.31 0.97 16 4 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 5 H 0.08 2.44 7.65 -52.49 -0.40 2.04 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 8 Si 0.88 21.12 24.31 -169.99 -4.13 16.99 16 9 H -0.28 -6.32 6.93 56.52 0.39 -5.93 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.01 6.53 56.52 0.37 -5.64 16 12 N -0.98 -19.60 3.12 -115.85 -0.36 -19.96 16 13 C 0.11 1.93 9.37 59.85 0.56 2.49 16 14 S 2.77 52.03 5.92 -107.50 -0.64 51.40 16 15 O -0.99 -19.37 15.26 -57.17 -0.87 -20.24 16 16 O -0.97 -21.54 15.14 -57.17 -0.87 -22.40 16 17 N -1.00 -14.04 2.59 -113.31 -0.29 -14.33 16 18 C 0.11 1.39 6.24 -2.95 -0.02 1.38 16 19 C -0.12 -1.20 5.71 -27.30 -0.16 -1.35 16 20 C -0.11 -1.14 4.30 -28.02 -0.12 -1.26 16 21 C 0.09 0.90 1.66 -70.77 -0.12 0.78 16 22 H 0.08 0.70 7.16 -51.93 -0.37 0.33 16 23 N -0.55 -5.48 4.82 -246.93 -1.19 -6.67 16 24 C 0.02 0.16 8.56 60.07 0.51 0.67 16 25 C 0.02 0.17 9.34 60.07 0.56 0.73 16 26 C -0.18 -1.96 4.11 -28.59 -0.12 -2.08 16 27 C 0.14 1.57 5.25 -4.09 -0.02 1.55 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.17 7.06 -51.93 -0.37 0.80 16 30 H 0.05 0.99 3.46 -51.93 -0.18 0.81 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 33 H 0.07 1.21 6.78 -51.93 -0.35 0.86 16 34 H 0.05 0.73 7.28 -51.93 -0.38 0.35 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.37 6.61 -51.92 -0.34 1.02 16 37 H 0.07 0.56 7.32 -51.92 -0.38 0.18 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 7.11 -51.93 -0.37 0.43 16 40 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 41 H 0.03 0.36 6.61 -51.93 -0.34 0.02 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 44 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 45 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 46 H 0.03 0.23 6.50 -51.93 -0.34 -0.11 16 47 H 0.07 0.72 6.39 -51.93 -0.33 0.39 16 48 H 0.08 1.08 5.68 -51.93 -0.29 0.79 16 49 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 50 H 0.08 0.86 7.38 -51.93 -0.38 0.48 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -32.50 372.71 -9.60 -42.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.48 Total: 0.81 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 0.85 Total: -7.28 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.07 Total: -66.98 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.74 Total: -42.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.13 Total: 16.99 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.64 Total: 51.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.50 -9.60 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.480 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds