Wall clock time and date at job start Tue Mar 31 2020 17:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47436 * 2 1 4 4 C 1.50698 * 109.47437 * 120.00154 * 2 1 3 5 5 H 1.08000 * 120.00202 * 119.99447 * 4 2 1 6 6 C 1.37875 * 119.99921 * 300.00236 * 4 2 1 7 7 N 1.31509 * 119.99916 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99887 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47144 * 90.00560 * 8 6 4 10 10 H 1.48506 * 109.46714 * 210.00316 * 8 6 4 11 11 H 1.48497 * 109.47292 * 330.00113 * 8 6 4 12 12 N 1.46504 * 109.46669 * 240.00292 * 2 1 3 13 13 C 1.46502 * 119.99881 * 295.81400 * 12 2 1 14 14 S 1.65598 * 120.00202 * 115.81964 * 12 2 1 15 15 O 1.42100 * 106.40379 * 161.80167 * 14 12 2 16 16 O 1.42107 * 106.40084 * 28.87929 * 14 12 2 17 17 N 1.65601 * 107.21807 * 275.34108 * 14 12 2 18 18 C 1.47601 * 118.64305 * 92.97981 * 17 14 12 19 19 C 1.53946 * 112.14212 * 137.88935 * 18 17 14 20 20 C 1.50880 * 110.09684 * 319.43668 * 19 18 17 21 21 C 1.52563 * 109.35718 * 91.88425 * 20 19 18 22 22 H 1.09001 * 108.51271 * 36.24527 * 21 20 19 23 23 N 1.46898 * 108.38955 * 153.82586 * 21 20 19 24 24 C 1.46901 * 111.00398 * 73.19651 * 23 21 20 25 25 C 1.46906 * 111.00174 * 197.15223 * 23 21 20 26 26 C 1.47091 * 114.32704 * 274.98838 * 21 20 19 27 27 C 1.44575 * 118.64421 * 273.00008 * 17 14 12 28 28 H 1.09002 * 109.47383 * 66.20676 * 1 2 3 29 29 H 1.08994 * 109.47167 * 186.20917 * 1 2 3 30 30 H 1.09007 * 109.46929 * 306.21075 * 1 2 3 31 31 H 0.97000 * 119.99809 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47193 * 270.00323 * 13 12 2 33 33 H 1.09004 * 109.46780 * 30.00715 * 13 12 2 34 34 H 1.08999 * 109.46781 * 149.99943 * 13 12 2 35 35 H 1.09003 * 108.95022 * 258.57838 * 18 17 14 36 36 H 1.09008 * 108.95186 * 17.20439 * 18 17 14 37 37 H 1.09007 * 109.36601 * 79.62896 * 19 18 17 38 38 H 1.09002 * 109.36850 * 199.24189 * 19 18 17 39 39 H 1.09000 * 109.48942 * 331.91512 * 20 19 18 40 40 H 1.08997 * 109.48794 * 211.84890 * 20 19 18 41 41 H 1.09004 * 109.46435 * 65.89385 * 24 23 21 42 42 H 1.08992 * 109.47716 * 185.89476 * 24 23 21 43 43 H 1.08998 * 109.46662 * 305.89909 * 24 23 21 44 44 H 1.09004 * 109.46824 * 60.97486 * 25 23 21 45 45 H 1.08994 * 109.47060 * 180.97280 * 25 23 21 46 46 H 1.09001 * 109.46876 * 300.97828 * 25 23 21 47 47 H 1.08995 * 109.33165 * 183.06687 * 26 21 20 48 48 H 1.09005 * 109.33110 * 302.54589 * 26 21 20 49 49 H 1.08996 * 109.44795 * 150.66061 * 27 17 14 50 50 H 1.08999 * 109.44948 * 30.74596 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6994 10 1 0.9773 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 1.7414 -2.1171 -1.3828 14 16 2.8831 0.1412 -2.3375 15 8 3.5618 -0.8344 -3.1165 16 8 3.5520 1.1890 -1.6491 17 7 1.7902 0.8681 -3.3472 18 6 1.3688 2.2522 -3.0551 19 6 1.2902 3.1155 -4.3272 20 6 2.4544 2.8069 -5.2360 21 6 2.0523 1.7114 -6.2187 22 1 1.0073 1.8581 -6.4919 23 7 2.8732 1.8504 -7.4290 24 6 4.2540 1.4143 -7.1816 25 6 2.2818 1.1133 -8.5537 26 6 2.2121 0.3441 -5.7005 27 6 1.2878 0.1207 -4.4783 28 1 -0.3634 0.4146 -0.9403 29 1 -0.3633 -1.0216 0.1111 30 1 -0.3633 0.6071 0.8292 31 1 1.9033 -0.5281 4.4374 32 1 2.5449 -2.7042 -0.9383 33 1 0.7970 -2.3700 -0.9008 34 1 1.6762 -2.3382 -2.4481 35 1 0.3876 2.2308 -2.5806 36 1 2.0836 2.7018 -2.3658 37 1 0.3574 2.9044 -4.8503 38 1 1.3167 4.1696 -4.0509 39 1 3.3013 2.4676 -4.6395 40 1 2.7337 3.7050 -5.7868 41 1 4.2659 0.3433 -6.9789 42 1 4.8644 1.6247 -8.0597 43 1 4.6561 1.9512 -6.3225 44 1 1.2924 1.5155 -8.7716 45 1 2.9184 1.2189 -9.4321 46 1 2.1957 0.0587 -8.2919 47 1 1.9553 -0.3704 -6.4825 48 1 3.2490 0.1904 -5.4015 49 1 0.2801 0.4595 -4.7185 50 1 1.2640 -0.9405 -4.2304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332023499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:47 Heat of formation + Delta-G solvation = -75.812617 kcal Electronic energy + Delta-G solvation = -29968.172976 eV Core-core repulsion = 26157.020284 eV Total energy + Delta-G solvation = -3811.152691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72546 -38.49460 -38.08551 -37.54062 -36.92100 -34.54257 -33.85446 -32.53429 -31.81783 -28.58956 -27.46315 -27.23505 -27.00383 -26.31832 -24.02508 -22.73766 -21.84370 -20.69666 -19.73314 -19.01759 -18.72131 -18.22073 -17.62011 -17.06113 -16.71079 -16.22165 -15.82707 -15.67726 -15.50435 -15.17939 -15.08822 -14.84390 -14.54267 -14.26524 -14.16816 -13.87433 -13.81154 -13.71502 -13.49092 -13.26090 -13.19851 -13.11469 -12.98597 -12.94311 -12.78189 -12.74444 -12.53329 -12.28242 -12.13734 -12.04021 -11.79504 -11.68225 -11.54343 -11.45057 -11.36007 -11.30443 -10.77341 -10.03497 -9.76740 -9.20628 -8.30581 -6.36303 -0.43690 1.30557 1.39328 1.47718 1.96131 2.32027 2.46840 3.04206 3.05399 3.28630 3.56240 3.83342 3.93657 4.03913 4.08645 4.20143 4.25034 4.36691 4.40569 4.42980 4.48186 4.57737 4.59802 4.62712 4.67936 4.69781 4.73746 4.80193 4.81603 4.87353 4.90810 4.97785 5.05133 5.07821 5.09592 5.14198 5.21073 5.23008 5.27286 5.37521 5.43507 5.47979 5.58947 5.72562 5.92390 6.10042 6.18685 6.33294 6.68101 7.28539 8.86360 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.003917 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.339997 B = 7146.921805 C = 7575.171143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.244 3.756 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.037 0.963 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.942 3.058 9 H -0.251 1.251 10 H -0.300 1.300 11 H -0.244 1.244 12 N -0.994 5.994 13 C 0.106 3.894 14 S 2.782 3.218 15 O -1.003 7.003 16 O -1.015 7.015 17 N -0.988 5.988 18 C 0.102 3.898 19 C -0.113 4.113 20 C -0.105 4.105 21 C 0.089 3.911 22 H 0.097 0.903 23 N -0.552 5.552 24 C 0.018 3.982 25 C 0.019 3.981 26 C -0.173 4.173 27 C 0.128 3.872 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.114 0.886 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 6.423 -23.970 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.056 0.944 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.767 3.233 9 H -0.176 1.176 10 H -0.227 1.227 11 H -0.167 1.167 12 N -0.834 5.834 13 C -0.039 4.039 14 S 2.793 3.207 15 O -0.987 6.987 16 O -0.999 6.999 17 N -0.829 5.829 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.019 4.019 22 H 0.115 0.885 23 N -0.275 5.275 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.213 4.213 27 C 0.002 3.998 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.132 0.868 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.033 6.955 -24.023 25.980 hybrid contribution 0.090 -0.838 1.300 1.549 sum -6.943 6.118 -22.723 24.535 Atomic orbital electron populations 1.22370 0.96050 1.02230 1.00861 1.18827 0.92506 0.92232 0.82645 0.94061 1.21450 1.31616 1.13120 0.90630 0.94441 1.25821 0.97384 1.00038 0.95161 1.70038 1.47421 1.42475 0.98670 0.85983 0.79733 0.79844 0.77738 1.17606 1.22738 1.16735 1.57490 1.73397 1.18950 1.33570 1.21317 1.01851 0.79489 1.01247 1.01733 0.74095 0.72381 0.72518 1.93512 1.72447 1.62007 1.70710 1.93517 1.73180 1.58404 1.74819 1.57403 1.63562 1.22924 1.39046 1.22013 1.01469 0.79615 0.99135 1.21625 0.99390 0.99859 0.94331 1.21072 0.97938 0.98832 0.96509 1.20686 0.98505 0.93083 0.89613 0.88489 1.62470 1.02358 1.56466 1.06185 1.22418 0.90478 0.98191 1.01986 1.22483 1.00885 0.96042 0.93432 1.22019 1.00771 0.99313 0.99197 1.21314 0.99080 0.95293 0.84106 0.90537 0.91843 0.93913 0.92389 0.95292 0.89987 0.89682 0.89665 0.91288 0.88914 0.89037 0.95017 0.90256 0.95760 0.90517 0.92724 0.90207 0.91047 0.95285 0.89442 0.93281 0.86780 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 8.52 71.98 0.61 -5.11 16 2 C 0.24 10.97 2.22 44.24 0.10 11.07 16 3 H 0.04 1.97 6.05 -2.39 -0.01 1.96 16 4 C -0.53 -29.85 8.90 25.60 0.23 -29.62 16 5 H 0.04 2.37 7.65 -2.91 -0.02 2.35 16 6 C 0.01 0.80 5.45 84.66 0.46 1.27 16 7 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 8 Si 0.94 42.97 24.31 68.60 1.67 44.64 16 9 H -0.25 -10.37 6.93 99.48 0.69 -9.68 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.24 -10.21 6.53 99.48 0.65 -9.56 16 12 N -0.99 -39.25 3.12 -520.44 -1.62 -40.87 16 13 C 0.11 3.68 9.37 127.77 1.20 4.88 16 14 S 2.78 104.36 5.92 -56.49 -0.33 104.03 16 15 O -1.00 -39.77 15.26 -128.00 -1.95 -41.73 16 16 O -1.02 -46.22 15.14 -128.00 -1.94 -48.16 16 17 N -0.99 -25.51 2.59 -512.41 -1.33 -26.83 16 18 C 0.10 2.29 6.24 86.49 0.54 2.83 16 19 C -0.11 -1.80 5.71 30.22 0.17 -1.63 16 20 C -0.11 -2.06 4.30 29.76 0.13 -1.93 16 21 C 0.09 1.55 1.66 42.93 0.07 1.62 16 22 H 0.10 1.31 7.16 -2.39 -0.02 1.29 16 23 N -0.55 -9.83 4.82 -935.16 -4.50 -14.34 16 24 C 0.02 0.35 8.56 127.69 1.09 1.44 16 25 C 0.02 0.26 9.34 127.69 1.19 1.45 16 26 C -0.17 -3.43 4.11 29.39 0.12 -3.31 16 27 C 0.13 2.49 5.25 87.37 0.46 2.95 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.27 7.06 -2.39 -0.02 2.25 16 30 H 0.04 1.61 3.46 -2.38 -0.01 1.60 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.03 1.11 8.03 -2.39 -0.02 1.09 16 33 H 0.08 2.65 6.78 -2.39 -0.02 2.63 16 34 H 0.08 2.31 7.28 -2.39 -0.02 2.30 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.93 6.61 -2.38 -0.02 1.91 16 37 H 0.09 1.05 7.32 -2.38 -0.02 1.03 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.03 0.81 7.11 -2.39 -0.02 0.79 16 40 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 41 H 0.02 0.51 6.61 -2.38 -0.02 0.50 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.22 7.11 -2.39 -0.02 1.20 16 44 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 45 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 46 H 0.03 0.39 6.50 -2.39 -0.02 0.37 16 47 H 0.09 1.47 6.39 -2.39 -0.02 1.46 16 48 H 0.05 1.30 5.68 -2.38 -0.01 1.29 16 49 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 50 H 0.08 1.50 7.38 -2.39 -0.02 1.48 16 Total: -1.00 -74.79 372.71 -2.50 -77.29 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.84 Total: 18.60 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 6.38 Total: -14.10 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -7.16 Total: -140.57 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -3.89 Total: -89.88 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Atomic # 16 Polarization: 104.36 SS G_CDS: -0.33 Total: 104.03 kcal Total: -74.79 -2.50 -77.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.478 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds