Wall clock time and date at job start Tue Mar 31 2020 17:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47052 * 2 1 4 4 C 1.50696 * 109.47314 * 119.99813 * 2 1 3 5 5 H 1.07998 * 120.00468 * 120.00278 * 4 2 1 6 6 C 1.37885 * 120.00391 * 300.00261 * 4 2 1 7 7 N 1.31518 * 119.99153 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47487 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47004 * 120.00137 * 8 6 4 11 11 H 1.48496 * 109.47053 * 239.99883 * 8 6 4 12 12 N 1.46495 * 109.47369 * 240.00183 * 2 1 3 13 13 C 1.46501 * 119.99710 * 300.00102 * 12 2 1 14 14 S 1.65595 * 120.00476 * 119.99571 * 12 2 1 15 15 O 1.42104 * 106.40284 * 336.46314 * 14 12 2 16 16 O 1.42092 * 106.40539 * 203.54080 * 14 12 2 17 17 N 1.65599 * 107.21693 * 90.00024 * 14 12 2 18 18 C 1.50168 * 120.53904 * 90.00398 * 17 14 12 19 19 C 1.46235 * 107.53735 * 109.56649 * 18 17 14 20 20 C 1.52523 * 114.27784 * 58.40457 * 19 18 17 21 21 C 1.50119 * 105.42254 * 270.59747 * 20 19 18 22 22 H 1.09008 * 109.21178 * 337.34333 * 21 20 19 23 23 N 1.46900 * 109.21583 * 217.98082 * 21 20 19 24 24 C 1.46899 * 110.99550 * 309.53544 * 23 21 20 25 25 C 1.46896 * 110.99748 * 73.48526 * 23 21 20 26 26 C 1.54854 * 110.81399 * 97.68026 * 21 20 19 27 27 C 1.43437 * 120.54025 * 269.98233 * 17 14 12 28 28 H 1.09004 * 109.47474 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47424 * 60.00168 * 1 2 3 30 30 H 1.08999 * 109.47324 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99532 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47081 * 269.99491 * 13 12 2 33 33 H 1.08995 * 109.47132 * 29.99514 * 13 12 2 34 34 H 1.09001 * 109.47294 * 150.00009 * 13 12 2 35 35 H 1.09001 * 109.84107 * 350.05897 * 18 17 14 36 36 H 1.09007 * 109.90388 * 229.10711 * 18 17 14 37 37 H 1.09009 * 108.52271 * 297.16628 * 19 18 17 38 38 H 1.08999 * 108.40647 * 179.56327 * 19 18 17 39 39 H 1.09006 * 110.25021 * 151.62715 * 20 19 18 40 40 H 1.09000 * 110.36914 * 29.63873 * 20 19 18 41 41 H 1.08997 * 109.47577 * 65.71753 * 24 23 21 42 42 H 1.09004 * 109.46864 * 185.71615 * 24 23 21 43 43 H 1.08996 * 109.47125 * 305.71095 * 24 23 21 44 44 H 1.08998 * 109.46964 * 60.00649 * 25 23 21 45 45 H 1.08998 * 109.47135 * 180.02562 * 25 23 21 46 46 H 1.09004 * 109.47445 * 300.00224 * 25 23 21 47 47 H 1.09000 * 109.35484 * 81.34281 * 26 21 20 48 48 H 1.08999 * 109.35576 * 200.93063 * 26 21 20 49 49 H 1.08996 * 108.15917 * 33.30433 * 27 17 14 50 50 H 1.08995 * 108.16067 * 149.87592 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5866 4.8160 12 7 2.0183 -0.6905 -1.1961 13 6 1.6644 -2.0931 -1.4280 14 16 2.9703 0.1142 -2.2862 15 8 2.6903 1.4973 -2.1193 16 8 2.8227 -0.5645 -3.5258 17 7 4.5436 -0.1041 -1.8180 18 6 5.3372 -1.2716 -2.3301 19 6 6.3435 -0.7493 -3.2537 20 6 7.2909 0.2738 -2.6357 21 6 6.6294 1.6057 -2.8414 22 1 5.9295 1.5338 -3.6739 23 7 7.6535 2.6106 -3.1565 24 6 8.7481 2.5715 -2.1776 25 6 8.1626 2.4328 -4.5229 26 6 5.8635 2.0421 -1.5682 27 6 5.1708 0.8191 -0.9170 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7088 1.1615 3.4844 32 1 2.4157 -2.7376 -0.9717 33 1 0.6904 -2.3001 -0.9846 34 1 1.6238 -2.2852 -2.5002 35 1 4.6790 -1.9652 -2.8536 36 1 5.8261 -1.7810 -1.4996 37 1 5.8319 -0.2831 -4.0958 38 1 6.9336 -1.5855 -3.6286 39 1 8.2555 0.2495 -3.1429 40 1 7.4200 0.0770 -1.5714 41 1 9.2758 1.6214 -2.2603 42 1 9.4406 3.3900 -2.3740 43 1 8.3402 2.6742 -1.1721 44 1 7.3418 2.5359 -5.2326 45 1 8.9195 3.1893 -4.7299 46 1 8.6045 1.4411 -4.6198 47 1 6.5640 2.4812 -0.8579 48 1 5.1108 2.7836 -1.8358 49 1 4.4129 1.1866 -0.2252 50 1 5.9166 0.2749 -0.3377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332023507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:51 Heat of formation + Delta-G solvation = -55.667930 kcal Electronic energy + Delta-G solvation = -29968.712955 eV Core-core repulsion = 26158.433803 eV Total energy + Delta-G solvation = -3810.279152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.73046 -36.74608 -36.53211 -36.12646 -35.19798 -32.66125 -32.59821 -31.56104 -29.06099 -27.70782 -26.13725 -25.70132 -25.48939 -25.13590 -22.53454 -21.51706 -20.69933 -19.49276 -18.09257 -17.21366 -16.83995 -16.42585 -16.09714 -15.76368 -15.31323 -15.07394 -14.92735 -14.37761 -14.10445 -13.59857 -13.54257 -13.33487 -13.13412 -12.82904 -12.71942 -12.52518 -12.25731 -12.04006 -11.94006 -11.82733 -11.77280 -11.72799 -11.46029 -11.36759 -11.15060 -11.05226 -11.00820 -10.93714 -10.83595 -10.72923 -10.50141 -10.44179 -10.26204 -10.18406 -10.01273 -9.27579 -8.71234 -8.49403 -8.30211 -7.93247 -6.10165 -4.18509 1.24312 3.22204 3.31003 3.32896 3.45364 3.90033 4.08814 4.34601 4.61380 4.77433 4.92765 5.00741 5.06407 5.14149 5.20239 5.23041 5.28301 5.32671 5.37161 5.44688 5.60236 5.66599 5.70229 5.73097 5.76055 5.84063 5.86333 5.95068 6.03962 6.10554 6.15750 6.21191 6.24764 6.34370 6.42610 6.59253 6.64262 6.84330 6.84693 7.00195 7.03066 7.05433 7.11140 7.51250 7.63731 7.77821 8.04229 8.26101 8.85458 9.48026 10.94779 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.004469 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.095273 B = 6263.253003 C = 7081.341983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.100 3.900 14 S 2.779 3.221 15 O -0.975 6.975 16 O -1.000 7.000 17 N -1.000 6.000 18 C 0.130 3.870 19 C -0.135 4.135 20 C -0.145 4.145 21 C 0.085 3.915 22 H 0.078 0.922 23 N -0.545 5.545 24 C 0.019 3.981 25 C 0.023 3.977 26 C -0.130 4.130 27 C 0.129 3.871 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.026 0.974 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.014 -2.260 -9.234 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.047 4.047 14 S 2.789 3.211 15 O -0.959 6.959 16 O -0.984 6.984 17 N -0.837 5.837 18 C 0.006 3.994 19 C -0.175 4.175 20 C -0.184 4.184 21 C -0.023 4.023 22 H 0.096 0.904 23 N -0.268 5.268 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.170 4.170 27 C 0.001 3.999 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.044 0.956 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.406 -1.170 -9.827 15.870 hybrid contribution 0.850 -1.508 1.257 2.139 sum 13.256 -2.678 -8.570 16.011 Atomic orbital electron populations 1.22070 0.98120 0.99586 1.00821 1.18727 0.91815 0.92669 0.80347 0.92397 1.21416 1.31715 1.13021 0.90103 0.91945 1.24927 0.95001 0.94966 0.98953 1.69896 1.36298 1.22619 1.23668 0.86497 0.78626 0.79594 0.82969 1.19883 1.20995 1.21030 1.57754 1.64379 1.21365 1.39826 1.21241 1.01788 0.81956 0.99687 1.01960 0.72469 0.73484 0.73171 1.93584 1.83682 1.31998 1.86664 1.93504 1.86090 1.76461 1.42347 1.58193 1.29841 1.34006 1.61694 1.20692 0.93860 0.87551 0.97299 1.20771 0.97546 0.99546 0.99607 1.21720 0.98197 0.96400 1.02104 1.21868 0.92904 0.88544 0.99033 0.90362 1.62175 1.12651 1.49610 1.02394 1.22427 0.93555 0.99990 0.96909 1.22375 1.00236 0.99598 0.90295 1.22796 0.99520 0.98444 0.96272 1.20661 0.98664 0.89718 0.90841 0.88846 0.96867 0.94850 0.92713 0.93944 0.90697 0.92221 0.89393 0.90832 0.91557 0.91687 0.91624 0.90550 0.95418 0.91865 0.90974 0.91508 0.91688 0.95592 0.90497 0.90392 0.89881 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.15 0.33 -3.15 16 2 C 0.27 6.47 2.62 -69.09 -0.18 6.28 16 3 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 4 C -0.52 -13.20 8.37 -34.44 -0.29 -13.49 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -20.54 3.12 -115.86 -0.36 -20.90 16 13 C 0.10 1.77 9.90 59.85 0.59 2.37 16 14 S 2.78 54.87 6.05 -107.50 -0.65 54.22 16 15 O -0.98 -22.21 15.83 -57.17 -0.90 -23.11 16 16 O -1.00 -20.27 15.55 -57.17 -0.89 -21.16 16 17 N -1.00 -16.03 2.94 -116.10 -0.34 -16.37 16 18 C 0.13 1.66 5.93 -5.21 -0.03 1.63 16 19 C -0.14 -1.53 5.20 -30.19 -0.16 -1.69 16 20 C -0.15 -1.58 3.98 -28.41 -0.11 -1.69 16 21 C 0.08 1.08 1.96 -68.17 -0.13 0.94 16 22 H 0.08 1.12 6.66 -51.92 -0.35 0.78 16 23 N -0.55 -6.37 4.93 -243.74 -1.20 -7.57 16 24 C 0.02 0.19 8.86 60.06 0.53 0.72 16 25 C 0.02 0.23 9.34 60.06 0.56 0.79 16 26 C -0.13 -1.86 5.94 -24.75 -0.15 -2.00 16 27 C 0.13 2.00 4.75 -4.66 -0.02 1.98 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 34 H 0.06 0.97 7.02 -51.93 -0.36 0.60 16 35 H 0.09 1.12 7.30 -51.93 -0.38 0.74 16 36 H 0.07 0.83 8.13 -51.92 -0.42 0.40 16 37 H 0.07 0.84 6.93 -51.92 -0.36 0.48 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.65 5.35 -51.93 -0.28 0.37 16 40 H 0.08 0.82 6.30 -51.93 -0.33 0.50 16 41 H 0.03 0.25 6.50 -51.93 -0.34 -0.09 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.71 6.25 -51.93 -0.32 0.39 16 44 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.24 6.69 -51.93 -0.35 -0.11 16 47 H 0.08 0.97 6.16 -51.93 -0.32 0.65 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.08 1.51 7.81 -51.93 -0.41 1.11 16 50 H 0.07 0.91 6.90 -51.93 -0.36 0.55 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -29.97 378.63 -10.60 -40.57 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.41 Total: 2.66 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.85 Total: -5.74 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.28 Total: -68.26 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.79 Total: -44.27 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.65 Total: 54.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.97 -10.60 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds